EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000014008 (Gene tree)
Gene ID: 566033
Gene Symbol: cwc22
Alias: fb13g08|fi16b02|wu:fb13g08|wu:fi16b02|zgc:153452
Full Name: CWC22 spliceosome-associated protein homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 91747 bases
Position: chr9:43552515-43644261
Accession: ZDB-GENE-060929-452
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000013971	MA3	PF02847.17	2.5e-22	1	1
ENSDARP00000013971	MIF4G	PF02854.19	2.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000136017	-	877	-	-	- (aa)	-	-
ENSDART00000023684	-	3295	-	ENSDARP00000013971	983 (aa)	-	B0S6B1

Gene Model

Click here to download ENSDARG00000014008's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000014008's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000014008	cwc22	85	64.877	ENSG00000163510	CWC22	78	82.131	Homo_sapiens
ENSDARG00000014008	cwc22	58	85.714	ENSAPOG00000004200	cwc22	65	84.965	Acanthochromis_polyacanthus
ENSDARG00000014008	cwc22	87	64.128	ENSAMEG00000011004	CWC22	90	66.907	Ailuropoda_melanoleuca
ENSDARG00000014008	cwc22	59	87.329	ENSACIG00000020055	cwc22	65	87.631	Amphilophus_citrinellus
ENSDARG00000014008	cwc22	63	85.714	ENSATEG00000005176	cwc22	57	87.762	Anabas_testudineus
ENSDARG00000014008	cwc22	76	69.526	ENSACAG00000009438	CWC22	64	81.739	Anolis_carolinensis
ENSDARG00000014008	cwc22	79	69.785	ENSANAG00000028324	CWC22	64	81.787	Aotus_nancymaae
ENSDARG00000014008	cwc22	59	88.946	ENSACLG00000025447	cwc22	83	88.676	Astatotilapia_calliptera
ENSDARG00000014008	cwc22	66	91.628	ENSAMXG00000014957	cwc22	55	95.536	Astyanax_mexicanus
ENSDARG00000014008	cwc22	90	65.088	ENSBTAG00000021726	CWC22	65	81.756	Bos_taurus
ENSDARG00000014008	cwc22	55	55.882	WBGene00002957	let-858	62	54.497	Caenorhabditis_elegans
ENSDARG00000014008	cwc22	86	64.732	ENSCAFG00000014160	CWC22	90	67.148	Canis_familiaris
ENSDARG00000014008	cwc22	85	65.090	ENSCAFG00020007223	CWC22	86	82.569	Canis_lupus_dingo
ENSDARG00000014008	cwc22	90	64.686	ENSCHIG00000017150	CWC22	65	81.583	Capra_hircus
ENSDARG00000014008	cwc22	81	62.454	ENSTSYG00000035591	-	71	74.871	Carlito_syrichta
ENSDARG00000014008	cwc22	79	70.670	ENSTSYG00000000218	-	64	82.100	Carlito_syrichta
ENSDARG00000014008	cwc22	81	61.172	ENSTSYG00000026635	-	91	59.278	Carlito_syrichta
ENSDARG00000014008	cwc22	81	61.104	ENSTSYG00000028686	-	93	58.736	Carlito_syrichta
ENSDARG00000014008	cwc22	80	65.385	ENSCAPG00000002064	CWC22	66	77.876	Cavia_aperea
ENSDARG00000014008	cwc22	80	69.355	ENSCPOG00000007492	CWC22	63	83.540	Cavia_porcellus
ENSDARG00000014008	cwc22	79	66.372	ENSCCAG00000021239	CWC22	60	80.072	Cebus_capucinus
ENSDARG00000014008	cwc22	79	69.861	ENSCATG00000035788	CWC22	61	85.326	Cercocebus_atys
ENSDARG00000014008	cwc22	84	64.904	ENSCLAG00000011118	CWC22	64	82.669	Chinchilla_lanigera
ENSDARG00000014008	cwc22	87	65.324	ENSCSAG00000012925	CWC22	64	82.302	Chlorocebus_sabaeus
ENSDARG00000014008	cwc22	66	65.789	ENSCHOG00000006362	CWC22	64	73.657	Choloepus_hoffmanni
ENSDARG00000014008	cwc22	81	67.874	ENSCPBG00000001765	CWC22	86	68.931	Chrysemys_picta_bellii
ENSDARG00000014008	cwc22	56	67.204	ENSCING00000008865	-	72	66.254	Ciona_intestinalis
ENSDARG00000014008	cwc22	55	67.159	ENSCSAVG00000003537	-	77	75.369	Ciona_savignyi
ENSDARG00000014008	cwc22	85	64.944	ENSCANG00000013762	CWC22	91	66.425	Colobus_angolensis_palliatus
ENSDARG00000014008	cwc22	79	69.686	ENSCGRG00001017005	-	76	84.629	Cricetulus_griseus_chok1gshd
ENSDARG00000014008	cwc22	79	69.686	ENSCGRG00000001934	-	61	84.629	Cricetulus_griseus_crigri
ENSDARG00000014008	cwc22	66	72.404	ENSCSEG00000005257	cwc22	63	79.756	Cynoglossus_semilaevis
ENSDARG00000014008	cwc22	58	89.336	ENSCVAG00000009836	cwc22	56	88.811	Cyprinodon_variegatus
ENSDARG00000014008	cwc22	60	62.957	ENSDNOG00000032640	-	80	63.966	Dasypus_novemcinctus
ENSDARG00000014008	cwc22	87	65.184	ENSDNOG00000003020	-	64	81.928	Dasypus_novemcinctus
ENSDARG00000014008	cwc22	79	68.766	ENSDORG00000011483	-	64	82.069	Dipodomys_ordii
ENSDARG00000014008	cwc22	67	66.269	ENSETEG00000013355	CWC22	81	70.447	Echinops_telfairi
ENSDARG00000014008	cwc22	87	64.071	ENSEASG00005022287	CWC22	63	83.451	Equus_asinus_asinus
ENSDARG00000014008	cwc22	84	64.198	ENSECAG00000010769	CWC22	63	83.451	Equus_caballus
ENSDARG00000014008	cwc22	57	81.429	ENSEEUG00000005336	CWC22	54	79.643	Erinaceus_europaeus
ENSDARG00000014008	cwc22	99	66.573	ENSELUG00000010536	cwc22	92	83.652	Esox_lucius
ENSDARG00000014008	cwc22	87	65.022	ENSFCAG00000018982	CWC22	64	81.928	Felis_catus
ENSDARG00000014008	cwc22	83	66.868	ENSFALG00000003495	CWC22	89	66.261	Ficedula_albicollis
ENSDARG00000014008	cwc22	90	63.468	ENSFDAG00000010857	CWC22	63	83.363	Fukomys_damarensis
ENSDARG00000014008	cwc22	56	89.397	ENSFHEG00000009620	cwc22	58	87.609	Fundulus_heteroclitus
ENSDARG00000014008	cwc22	61	84.448	ENSGMOG00000009084	cwc22	91	86.690	Gadus_morhua
ENSDARG00000014008	cwc22	83	66.053	ENSGALG00000009001	CWC22	62	81.928	Gallus_gallus
ENSDARG00000014008	cwc22	56	89.818	ENSGAFG00000021155	cwc22	95	81.269	Gambusia_affinis
ENSDARG00000014008	cwc22	59	87.047	ENSGACG00000002071	cwc22	69	87.063	Gasterosteus_aculeatus
ENSDARG00000014008	cwc22	86	65.975	ENSGAGG00000013471	CWC22	87	70.013	Gopherus_agassizii
ENSDARG00000014008	cwc22	85	64.726	ENSGGOG00000012484	CWC22	61	85.326	Gorilla_gorilla
ENSDARG00000014008	cwc22	65	76.890	ENSHBUG00000010504	cwc22	63	88.267	Haplochromis_burtoni
ENSDARG00000014008	cwc22	85	64.614	ENSHGLG00000005692	CWC22	63	83.978	Heterocephalus_glaber_female
ENSDARG00000014008	cwc22	85	64.614	ENSHGLG00100016497	CWC22	81	82.437	Heterocephalus_glaber_male
ENSDARG00000014008	cwc22	68	77.536	ENSHCOG00000004206	cwc22	68	84.991	Hippocampus_comes
ENSDARG00000014008	cwc22	80	75.696	ENSIPUG00000005831	cwc22	78	75.616	Ictalurus_punctatus
ENSDARG00000014008	cwc22	86	64.134	ENSSTOG00000009788	CWC22	64	81.724	Ictidomys_tridecemlineatus
ENSDARG00000014008	cwc22	90	64.712	ENSJJAG00000017012	-	64	82.383	Jaculus_jaculus
ENSDARG00000014008	cwc22	59	87.479	ENSKMAG00000005228	cwc22	58	87.631	Kryptolebias_marmoratus
ENSDARG00000014008	cwc22	68	79.730	ENSLBEG00000020518	cwc22	63	86.592	Labrus_bergylta
ENSDARG00000014008	cwc22	61	77.483	ENSLACG00000005916	CWC22	67	69.921	Latimeria_chalumnae
ENSDARG00000014008	cwc22	90	69.674	ENSLOCG00000006456	cwc22	83	74.198	Lepisosteus_oculatus
ENSDARG00000014008	cwc22	86	63.234	ENSLAFG00000014802	CWC22	64	81.100	Loxodonta_africana
ENSDARG00000014008	cwc22	79	70.000	ENSMFAG00000000590	CWC22	65	85.326	Macaca_fascicularis
ENSDARG00000014008	cwc22	79	70.113	ENSMMUG00000020642	CWC22	63	85.326	Macaca_mulatta
ENSDARG00000014008	cwc22	79	70.151	ENSMNEG00000034567	CWC22	62	85.326	Macaca_nemestrina
ENSDARG00000014008	cwc22	79	70.127	ENSMLEG00000042344	CWC22	91	66.871	Mandrillus_leucophaeus
ENSDARG00000014008	cwc22	61	87.124	ENSMAMG00000018888	cwc22	74	74.768	Mastacembelus_armatus
ENSDARG00000014008	cwc22	59	88.946	ENSMZEG00005021449	cwc22	57	88.676	Maylandia_zebra
ENSDARG00000014008	cwc22	71	67.270	ENSMAUG00000016154	-	62	84.468	Mesocricetus_auratus
ENSDARG00000014008	cwc22	81	68.317	ENSMICG00000016919	CWC22	65	81.959	Microcebus_murinus
ENSDARG00000014008	cwc22	60	80.602	ENSMMOG00000019720	cwc22	81	81.707	Mola_mola
ENSDARG00000014008	cwc22	55	77.901	ENSMODG00000020117	-	98	77.901	Monodelphis_domestica
ENSDARG00000014008	cwc22	81	68.983	ENSMODG00000010233	-	62	84.127	Monodelphis_domestica
ENSDARG00000014008	cwc22	55	78.189	ENSMODG00000003711	-	98	78.189	Monodelphis_domestica
ENSDARG00000014008	cwc22	90	64.738	MGP_CAROLIEiJ_G0023696	-	79	82.474	Mus_caroli
ENSDARG00000014008	cwc22	67	74.080	ENSMUSG00000095824	Gm13697	71	81.570	Mus_musculus
ENSDARG00000014008	cwc22	67	74.080	ENSMUSG00000096484	Gm13696	71	81.570	Mus_musculus
ENSDARG00000014008	cwc22	67	74.080	ENSMUSG00000096337	Gm13694	71	81.570	Mus_musculus
ENSDARG00000014008	cwc22	67	74.080	ENSMUSG00000079247	Gm13691	71	81.570	Mus_musculus
ENSDARG00000014008	cwc22	67	74.080	ENSMUSG00000094125	Gm13698	71	81.570	Mus_musculus
ENSDARG00000014008	cwc22	67	74.080	ENSMUSG00000096729	Gm13695	71	81.399	Mus_musculus
ENSDARG00000014008	cwc22	67	76.233	ENSMUSG00000027014	Cwc22	80	82.444	Mus_musculus
ENSDARG00000014008	cwc22	67	74.080	ENSMUSG00000094336	Gm13693	71	81.570	Mus_musculus
ENSDARG00000014008	cwc22	90	64.847	MGP_PahariEiJ_G0025147	-	79	82.474	Mus_pahari
ENSDARG00000014008	cwc22	86	64.469	ENSMPUG00000002432	CWC22	64	81.928	Mustela_putorius_furo
ENSDARG00000014008	cwc22	79	69.823	ENSMLUG00000013437	-	69	82.272	Myotis_lucifugus
ENSDARG00000014008	cwc22	67	73.551	ENSMLUG00000024966	-	73	80.172	Myotis_lucifugus
ENSDARG00000014008	cwc22	79	63.104	ENSNGAG00000013881	-	81	78.889	Nannospalax_galili
ENSDARG00000014008	cwc22	79	69.773	ENSNLEG00000006248	CWC22	61	85.145	Nomascus_leucogenys
ENSDARG00000014008	cwc22	58	75.874	ENSMEUG00000011026	CWC22	96	78.165	Notamacropus_eugenii
ENSDARG00000014008	cwc22	52	83.594	ENSODEG00000007673	CWC22	82	83.594	Octodon_degus
ENSDARG00000014008	cwc22	87	66.892	ENSOANG00000008649	CWC22	99	69.749	Ornithorhynchus_anatinus
ENSDARG00000014008	cwc22	68	77.557	ENSORLG00000010538	cwc22	60	90.018	Oryzias_latipes
ENSDARG00000014008	cwc22	68	77.557	ENSORLG00020015117	cwc22	60	90.018	Oryzias_latipes_hni
ENSDARG00000014008	cwc22	68	77.762	ENSORLG00015018073	cwc22	60	90.018	Oryzias_latipes_hsok
ENSDARG00000014008	cwc22	58	88.754	ENSOMEG00000015199	cwc22	60	89.492	Oryzias_melastigma
ENSDARG00000014008	cwc22	81	69.231	ENSOGAG00000015287	CWC22	90	67.442	Otolemur_garnettii
ENSDARG00000014008	cwc22	90	64.583	ENSOARG00000016905	CWC22	64	81.583	Ovis_aries
ENSDARG00000014008	cwc22	85	64.938	ENSPPAG00000027833	CWC22	87	66.502	Pan_paniscus
ENSDARG00000014008	cwc22	87	64.910	ENSPPRG00000001389	CWC22	64	81.928	Panthera_pardus
ENSDARG00000014008	cwc22	87	64.910	ENSPTIG00000019139	CWC22	64	81.928	Panthera_tigris_altaica
ENSDARG00000014008	cwc22	85	64.877	ENSPTRG00000012698	CWC22	61	85.326	Pan_troglodytes
ENSDARG00000014008	cwc22	79	70.127	ENSPANG00000018976	CWC22	91	66.871	Papio_anubis
ENSDARG00000014008	cwc22	81	78.545	ENSPKIG00000021346	cwc22	92	76.030	Paramormyrops_kingsleyae
ENSDARG00000014008	cwc22	85	65.549	ENSPSIG00000008632	CWC22	64	82.616	Pelodiscus_sinensis
ENSDARG00000014008	cwc22	58	80.628	ENSPMGG00000020129	cwc22	59	81.359	Periophthalmus_magnuspinnatus
ENSDARG00000014008	cwc22	82	63.464	ENSPEMG00000023936	-	88	77.036	Peromyscus_maniculatus_bairdii
ENSDARG00000014008	cwc22	77	64.250	ENSPMAG00000005914	cwc22	68	80.656	Petromyzon_marinus
ENSDARG00000014008	cwc22	80	63.275	ENSPCIG00000009903	-	80	82.986	Phascolarctos_cinereus
ENSDARG00000014008	cwc22	56	90.761	ENSPFOG00000015025	cwc22	76	89.391	Poecilia_formosa
ENSDARG00000014008	cwc22	57	90.161	ENSPLAG00000021405	cwc22	57	88.676	Poecilia_latipinna
ENSDARG00000014008	cwc22	56	90.942	ENSPMEG00000007850	cwc22	57	88.676	Poecilia_mexicana
ENSDARG00000014008	cwc22	56	86.570	ENSPREG00000004312	cwc22	67	84.201	Poecilia_reticulata
ENSDARG00000014008	cwc22	85	64.726	ENSPPYG00000012986	CWC22	64	82.100	Pongo_abelii
ENSDARG00000014008	cwc22	65	74.808	ENSPCAG00000011882	CWC22	65	80.969	Procavia_capensis
ENSDARG00000014008	cwc22	79	64.953	ENSPCOG00000010195	CWC22	61	82.152	Propithecus_coquereli
ENSDARG00000014008	cwc22	81	68.382	ENSPVAG00000011497	CWC22	64	81.583	Pteropus_vampyrus
ENSDARG00000014008	cwc22	65	79.084	ENSPNYG00000010435	cwc22	82	86.411	Pundamilia_nyererei
ENSDARG00000014008	cwc22	77	78.968	ENSPNAG00000024730	cwc22	65	70.479	Pygocentrus_nattereri
ENSDARG00000014008	cwc22	88	62.918	ENSRNOG00000012651	Cwc22	64	77.108	Rattus_norvegicus
ENSDARG00000014008	cwc22	88	62.723	ENSRNOG00000038322	LOC500684	64	77.148	Rattus_norvegicus
ENSDARG00000014008	cwc22	79	67.386	ENSRBIG00000036751	CWC22	90	64.540	Rhinopithecus_bieti
ENSDARG00000014008	cwc22	85	64.865	ENSRROG00000037520	CWC22	91	66.748	Rhinopithecus_roxellana
ENSDARG00000014008	cwc22	85	62.710	ENSSBOG00000021683	CWC22	63	78.866	Saimiri_boliviensis_boliviensis
ENSDARG00000014008	cwc22	83	68.005	ENSSHAG00000016596	-	66	81.678	Sarcophilus_harrisii
ENSDARG00000014008	cwc22	67	65.408	ENSSHAG00000004040	-	78	71.781	Sarcophilus_harrisii
ENSDARG00000014008	cwc22	55	85.661	ENSSFOG00015010559	cwc22	65	85.502	Scleropages_formosus
ENSDARG00000014008	cwc22	59	84.932	ENSSMAG00000004724	cwc22	58	85.490	Scophthalmus_maximus
ENSDARG00000014008	cwc22	59	87.329	ENSSDUG00000010656	cwc22	58	87.456	Seriola_dumerili
ENSDARG00000014008	cwc22	57	87.943	ENSSLDG00000023157	cwc22	81	87.544	Seriola_lalandi_dorsalis
ENSDARG00000014008	cwc22	85	64.419	ENSSPUG00000006395	CWC22	93	65.479	Sphenodon_punctatus
ENSDARG00000014008	cwc22	86	64.422	ENSSSCG00000016008	CWC22	64	81.928	Sus_scrofa
ENSDARG00000014008	cwc22	83	66.038	ENSTGUG00000009340	-	67	80.551	Taeniopygia_guttata
ENSDARG00000014008	cwc22	60	87.416	ENSTRUG00000014411	cwc22	61	89.217	Takifugu_rubripes
ENSDARG00000014008	cwc22	63	79.173	ENSTNIG00000005074	cwc22	76	83.618	Tetraodon_nigroviridis
ENSDARG00000014008	cwc22	83	55.361	ENSTBEG00000014539	CWC22	67	63.011	Tupaia_belangeri
ENSDARG00000014008	cwc22	86	63.739	ENSTTRG00000012142	CWC22	65	81.067	Tursiops_truncatus
ENSDARG00000014008	cwc22	89	73.839	ENSUAMG00000010342	CWC22	86	82.622	Ursus_americanus
ENSDARG00000014008	cwc22	84	64.534	ENSUMAG00000016730	CWC22	90	66.787	Ursus_maritimus
ENSDARG00000014008	cwc22	63	75.457	ENSVPAG00000008565	CWC22	64	81.756	Vicugna_pacos
ENSDARG00000014008	cwc22	86	64.660	ENSVVUG00000009738	CWC22	90	67.148	Vulpes_vulpes
ENSDARG00000014008	cwc22	76	70.801	ENSXETG00000014099	cwc22	71	85.507	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0071005	U2-type precatalytic spliceosome	-	ISS	Component
GO:0071006	U2-type catalytic step 1 spliceosome	21873635.	IBA	Component
GO:0071006	U2-type catalytic step 1 spliceosome	-	ISS	Component
GO:0071007	U2-type catalytic step 2 spliceosome	-	ISS	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component