EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000014041 (Gene tree)
Gene ID: 557875
Gene Symbol: smarcad1a
Alias: smarcad1|wu:fi25c01|zgc:113183
Full Name: SWI/SNF-related%2C matrix-associated actin-dependent regulator of chromatin%2C subfamily a%2C containing DEAD/H box 1 a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 16448 bases
Position: chr8:29635968-29652415
Accession: ZDB-GENE-050522-499
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000085842	ResIII	PF04851.15	5.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000147798	-	479	-	-	- (aa)	-	-
ENSDART00000140597	-	491	-	-	- (aa)	-	-
ENSDART00000091409	-	3644	-	ENSDARP00000085842	972 (aa)	-	B0R061
ENSDART00000133047	-	600	-	ENSDARP00000122607	154 (aa)	-	F6NTX5
ENSDART00000139029	-	2151	-	ENSDARP00000118043	385 (aa)	-	B0R060

Gene Model

Click here to download ENSDARG00000014041's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000014041's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000014041	smarcad1a	55	34.370	ENSDARG00000057738	hells	67	33.851
ENSDARG00000014041	smarcad1a	87	59.552	ENSDARG00000073721	smarcad1b	80	61.450

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000014041	smarcad1a	92	55.678	ENSG00000163104	SMARCAD1	99	65.825	Homo_sapiens
ENSDARG00000014041	smarcad1a	100	57.968	ENSAPOG00000011446	smarcad1a	92	70.166	Acanthochromis_polyacanthus
ENSDARG00000014041	smarcad1a	92	55.617	ENSAMEG00000005844	SMARCAD1	85	54.516	Ailuropoda_melanoleuca
ENSDARG00000014041	smarcad1a	66	74.419	ENSACIG00000018326	smarcad1a	88	77.820	Amphilophus_citrinellus
ENSDARG00000014041	smarcad1a	100	57.488	ENSAOCG00000019762	smarcad1a	91	70.637	Amphiprion_ocellaris
ENSDARG00000014041	smarcad1a	100	58.131	ENSAPEG00000003889	smarcad1a	93	69.335	Amphiprion_percula
ENSDARG00000014041	smarcad1a	91	60.515	ENSATEG00000015608	smarcad1a	87	69.626	Anabas_testudineus
ENSDARG00000014041	smarcad1a	99	52.020	ENSAPLG00000004630	SMARCAD1	98	52.045	Anas_platyrhynchos
ENSDARG00000014041	smarcad1a	91	53.642	ENSACAG00000013554	SMARCAD1	85	52.255	Anolis_carolinensis
ENSDARG00000014041	smarcad1a	92	55.788	ENSANAG00000020488	SMARCAD1	96	54.585	Aotus_nancymaae
ENSDARG00000014041	smarcad1a	100	57.930	ENSACLG00000017063	smarcad1a	92	70.426	Astatotilapia_calliptera
ENSDARG00000014041	smarcad1a	86	60.864	ENSAMXG00000019130	smarcad1b	85	61.462	Astyanax_mexicanus
ENSDARG00000014041	smarcad1a	71	77.633	ENSAMXG00000015470	smarcad1a	89	81.761	Astyanax_mexicanus
ENSDARG00000014041	smarcad1a	92	55.116	ENSBTAG00000017061	SMARCAD1	85	53.954	Bos_taurus
ENSDARG00000014041	smarcad1a	67	40.000	WBGene00010845	M03C11.8	64	40.310	Caenorhabditis_elegans
ENSDARG00000014041	smarcad1a	92	55.678	ENSCJAG00000006778	SMARCAD1	85	54.476	Callithrix_jacchus
ENSDARG00000014041	smarcad1a	92	55.617	ENSCAFG00000010026	SMARCAD1	100	49.208	Canis_familiaris
ENSDARG00000014041	smarcad1a	92	55.568	ENSCAFG00020003994	SMARCAD1	98	54.466	Canis_lupus_dingo
ENSDARG00000014041	smarcad1a	92	55.396	ENSCHIG00000012905	SMARCAD1	85	54.230	Capra_hircus
ENSDARG00000014041	smarcad1a	100	49.673	ENSTSYG00000002706	SMARCAD1	100	48.928	Carlito_syrichta
ENSDARG00000014041	smarcad1a	92	46.580	ENSCAPG00000016744	SMARCAD1	95	46.397	Cavia_aperea
ENSDARG00000014041	smarcad1a	92	55.093	ENSCPOG00000011398	SMARCAD1	84	54.565	Cavia_porcellus
ENSDARG00000014041	smarcad1a	92	55.678	ENSCCAG00000022264	SMARCAD1	99	65.825	Cebus_capucinus
ENSDARG00000014041	smarcad1a	92	55.678	ENSCATG00000035663	SMARCAD1	98	54.476	Cercocebus_atys
ENSDARG00000014041	smarcad1a	89	55.771	ENSCSAG00000004186	SMARCAD1	100	54.525	Chlorocebus_sabaeus
ENSDARG00000014041	smarcad1a	91	56.402	ENSCPBG00000013203	SMARCAD1	84	55.494	Chrysemys_picta_bellii
ENSDARG00000014041	smarcad1a	67	48.042	ENSCING00000001688	-	94	49.120	Ciona_intestinalis
ENSDARG00000014041	smarcad1a	92	55.678	ENSCANG00000003556	SMARCAD1	99	65.825	Colobus_angolensis_palliatus
ENSDARG00000014041	smarcad1a	100	56.321	ENSCSEG00000017903	smarcad1a	100	55.932	Cynoglossus_semilaevis
ENSDARG00000014041	smarcad1a	100	56.711	ENSCSEG00000014419	-	100	55.902	Cynoglossus_semilaevis
ENSDARG00000014041	smarcad1a	92	55.286	ENSDNOG00000000806	-	88	53.545	Dasypus_novemcinctus
ENSDARG00000014041	smarcad1a	100	49.719	ENSDORG00000012331	Smarcad1	100	50.000	Dipodomys_ordii
ENSDARG00000014041	smarcad1a	65	44.769	FBgn0032157	Etl1	76	44.923	Drosophila_melanogaster
ENSDARG00000014041	smarcad1a	63	46.264	ENSEBUG00000003969	smarcad1a	91	47.279	Eptatretus_burgeri
ENSDARG00000014041	smarcad1a	92	55.617	ENSEASG00005012382	SMARCAD1	85	54.516	Equus_asinus_asinus
ENSDARG00000014041	smarcad1a	92	55.617	ENSECAG00000011562	SMARCAD1	85	54.516	Equus_caballus
ENSDARG00000014041	smarcad1a	100	60.427	ENSELUG00000018535	smarcad1a	100	60.155	Esox_lucius
ENSDARG00000014041	smarcad1a	84	58.463	ENSELUG00000019154	smarcad1b	79	59.950	Esox_lucius
ENSDARG00000014041	smarcad1a	92	55.727	ENSFCAG00000003958	SMARCAD1	99	65.825	Felis_catus
ENSDARG00000014041	smarcad1a	94	53.692	ENSFALG00000006089	SMARCAD1	87	53.598	Ficedula_albicollis
ENSDARG00000014041	smarcad1a	92	54.655	ENSFDAG00000017027	SMARCAD1	85	53.880	Fukomys_damarensis
ENSDARG00000014041	smarcad1a	92	73.404	ENSFHEG00000012778	smarcad1a	91	67.615	Fundulus_heteroclitus
ENSDARG00000014041	smarcad1a	91	62.809	ENSGMOG00000018995	smarcad1a	97	61.899	Gadus_morhua
ENSDARG00000014041	smarcad1a	85	55.114	ENSGALG00000037339	SMARCAD1	94	54.950	Gallus_gallus
ENSDARG00000014041	smarcad1a	100	53.444	ENSGAFG00000013498	smarcad1a	89	75.955	Gambusia_affinis
ENSDARG00000014041	smarcad1a	93	61.488	ENSGACG00000007327	smarcad1a	99	60.851	Gasterosteus_aculeatus
ENSDARG00000014041	smarcad1a	91	55.960	ENSGAGG00000008582	SMARCAD1	84	55.383	Gopherus_agassizii
ENSDARG00000014041	smarcad1a	92	55.678	ENSGGOG00000023001	SMARCAD1	85	54.476	Gorilla_gorilla
ENSDARG00000014041	smarcad1a	100	57.156	ENSHBUG00000011042	smarcad1a	92	69.835	Haplochromis_burtoni
ENSDARG00000014041	smarcad1a	92	54.655	ENSHGLG00000005070	SMARCAD1	85	53.880	Heterocephalus_glaber_female
ENSDARG00000014041	smarcad1a	92	54.655	ENSHGLG00100006812	SMARCAD1	85	53.880	Heterocephalus_glaber_male
ENSDARG00000014041	smarcad1a	95	56.748	ENSIPUG00000022817	smarcad1b	97	55.626	Ictalurus_punctatus
ENSDARG00000014041	smarcad1a	92	54.913	ENSSTOG00000001227	SMARCAD1	85	54.098	Ictidomys_tridecemlineatus
ENSDARG00000014041	smarcad1a	92	55.252	ENSJJAG00000022342	Smarcad1	85	54.626	Jaculus_jaculus
ENSDARG00000014041	smarcad1a	90	73.385	ENSKMAG00000021351	smarcad1a	81	76.136	Kryptolebias_marmoratus
ENSDARG00000014041	smarcad1a	100	58.302	ENSLBEG00000008088	smarcad1a	99	57.750	Labrus_bergylta
ENSDARG00000014041	smarcad1a	100	57.270	ENSLOCG00000012909	smarcad1a	100	57.692	Lepisosteus_oculatus
ENSDARG00000014041	smarcad1a	92	54.465	ENSLAFG00000000040	SMARCAD1	85	53.384	Loxodonta_africana
ENSDARG00000014041	smarcad1a	92	55.678	ENSMFAG00000042606	SMARCAD1	98	54.476	Macaca_fascicularis
ENSDARG00000014041	smarcad1a	92	55.458	ENSMMUG00000022242	SMARCAD1	98	54.476	Macaca_mulatta
ENSDARG00000014041	smarcad1a	92	55.678	ENSMNEG00000038117	SMARCAD1	99	65.825	Macaca_nemestrina
ENSDARG00000014041	smarcad1a	92	55.678	ENSMLEG00000038333	SMARCAD1	99	65.825	Mandrillus_leucophaeus
ENSDARG00000014041	smarcad1a	100	58.168	ENSMAMG00000000933	smarcad1a	100	57.875	Mastacembelus_armatus
ENSDARG00000014041	smarcad1a	95	50.846	ENSMGAG00000005577	SMARCAD1	94	51.220	Meleagris_gallopavo
ENSDARG00000014041	smarcad1a	92	53.746	ENSMAUG00000008417	Smarcad1	85	53.770	Mesocricetus_auratus
ENSDARG00000014041	smarcad1a	100	50.187	ENSMICG00000009746	SMARCAD1	100	49.581	Microcebus_murinus
ENSDARG00000014041	smarcad1a	92	54.171	ENSMOCG00000017142	Smarcad1	85	53.443	Microtus_ochrogaster
ENSDARG00000014041	smarcad1a	77	72.768	ENSMMOG00000000275	smarcad1a	97	74.843	Mola_mola
ENSDARG00000014041	smarcad1a	98	52.449	ENSMODG00000019268	SMARCAD1	89	51.806	Monodelphis_domestica
ENSDARG00000014041	smarcad1a	89	54.045	MGP_CAROLIEiJ_G0028458	-	67	53.515	Mus_caroli
ENSDARG00000014041	smarcad1a	92	54.686	ENSMUSG00000029920	Smarcad1	76	64.476	Mus_musculus
ENSDARG00000014041	smarcad1a	92	54.906	MGP_PahariEiJ_G0022198	Smarcad1	63	64.632	Mus_pahari
ENSDARG00000014041	smarcad1a	92	54.686	MGP_SPRETEiJ_G0029462	Smarcad1	91	64.476	Mus_spretus
ENSDARG00000014041	smarcad1a	92	55.617	ENSMPUG00000002111	SMARCAD1	85	54.516	Mustela_putorius_furo
ENSDARG00000014041	smarcad1a	92	55.956	ENSMLUG00000000425	SMARCAD1	85	55.324	Myotis_lucifugus
ENSDARG00000014041	smarcad1a	100	50.238	ENSNGAG00000000810	Smarcad1	100	49.007	Nannospalax_galili
ENSDARG00000014041	smarcad1a	69	72.496	ENSNBRG00000012749	smarcad1a	84	70.355	Neolamprologus_brichardi
ENSDARG00000014041	smarcad1a	92	55.678	ENSNLEG00000014225	SMARCAD1	99	65.825	Nomascus_leucogenys
ENSDARG00000014041	smarcad1a	92	55.093	ENSODEG00000004334	SMARCAD1	85	54.626	Octodon_degus
ENSDARG00000014041	smarcad1a	65	75.430	ENSONIG00000015059	smarcad1a	100	59.543	Oreochromis_niloticus
ENSDARG00000014041	smarcad1a	86	56.888	ENSOANG00000013764	SMARCAD1	94	57.673	Ornithorhynchus_anatinus
ENSDARG00000014041	smarcad1a	92	54.846	ENSOCUG00000017283	SMARCAD1	90	51.901	Oryctolagus_cuniculus
ENSDARG00000014041	smarcad1a	100	57.306	ENSORLG00000004869	smarcad1a	90	74.921	Oryzias_latipes
ENSDARG00000014041	smarcad1a	100	57.495	ENSORLG00020020569	smarcad1a	83	75.079	Oryzias_latipes_hni
ENSDARG00000014041	smarcad1a	100	56.764	ENSORLG00015009045	smarcad1a	100	57.306	Oryzias_latipes_hsok
ENSDARG00000014041	smarcad1a	99	57.036	ENSOMEG00000023032	smarcad1a	92	68.250	Oryzias_melastigma
ENSDARG00000014041	smarcad1a	98	52.578	ENSOGAG00000011444	SMARCAD1	90	51.833	Otolemur_garnettii
ENSDARG00000014041	smarcad1a	92	55.396	ENSOARG00000017851	SMARCAD1	85	54.230	Ovis_aries
ENSDARG00000014041	smarcad1a	92	55.678	ENSPPAG00000035715	SMARCAD1	85	54.476	Pan_paniscus
ENSDARG00000014041	smarcad1a	92	55.678	ENSPPRG00000024756	SMARCAD1	99	65.825	Panthera_pardus
ENSDARG00000014041	smarcad1a	92	55.556	ENSPTIG00000017868	SMARCAD1	85	54.457	Panthera_tigris_altaica
ENSDARG00000014041	smarcad1a	92	55.678	ENSPTRG00000023126	SMARCAD1	99	65.825	Pan_troglodytes
ENSDARG00000014041	smarcad1a	92	54.615	ENSPANG00000019757	SMARCAD1	85	53.428	Papio_anubis
ENSDARG00000014041	smarcad1a	94	54.633	ENSPSIG00000010255	SMARCAD1	87	54.341	Pelodiscus_sinensis
ENSDARG00000014041	smarcad1a	65	69.545	ENSPMGG00000010735	smarcad1a	90	69.545	Periophthalmus_magnuspinnatus
ENSDARG00000014041	smarcad1a	100	44.509	ENSPEMG00000001854	Smarcad1	100	43.365	Peromyscus_maniculatus_bairdii
ENSDARG00000014041	smarcad1a	91	48.458	ENSPMAG00000003516	smarcad1a	89	47.470	Petromyzon_marinus
ENSDARG00000014041	smarcad1a	84	57.419	ENSPCIG00000008137	SMARCAD1	95	56.634	Phascolarctos_cinereus
ENSDARG00000014041	smarcad1a	93	74.046	ENSPFOG00000019116	smarcad1a	87	69.368	Poecilia_formosa
ENSDARG00000014041	smarcad1a	93	73.893	ENSPLAG00000000108	smarcad1a	87	69.231	Poecilia_latipinna
ENSDARG00000014041	smarcad1a	93	74.046	ENSPMEG00000009155	smarcad1a	87	69.368	Poecilia_mexicana
ENSDARG00000014041	smarcad1a	100	71.512	ENSPREG00000018185	smarcad1a	88	69.103	Poecilia_reticulata
ENSDARG00000014041	smarcad1a	100	49.719	ENSPPYG00000014935	SMARCAD1	100	48.974	Pongo_abelii
ENSDARG00000014041	smarcad1a	62	59.223	ENSPCOG00000020478	SMARCAD1	62	64.245	Propithecus_coquereli
ENSDARG00000014041	smarcad1a	92	54.807	ENSPVAG00000001760	SMARCAD1	85	53.712	Pteropus_vampyrus
ENSDARG00000014041	smarcad1a	70	71.072	ENSPNYG00000010087	smarcad1a	85	70.255	Pundamilia_nyererei
ENSDARG00000014041	smarcad1a	100	71.586	ENSPNAG00000001663	smarcad1a	100	70.553	Pygocentrus_nattereri
ENSDARG00000014041	smarcad1a	85	61.198	ENSPNAG00000010099	smarcad1b	84	61.911	Pygocentrus_nattereri
ENSDARG00000014041	smarcad1a	92	55.142	ENSRNOG00000006391	Smarcad1	62	64.945	Rattus_norvegicus
ENSDARG00000014041	smarcad1a	92	55.678	ENSRBIG00000041989	SMARCAD1	85	54.476	Rhinopithecus_bieti
ENSDARG00000014041	smarcad1a	92	55.678	ENSRROG00000035309	SMARCAD1	85	54.476	Rhinopithecus_roxellana
ENSDARG00000014041	smarcad1a	92	55.678	ENSSBOG00000032114	SMARCAD1	99	65.825	Saimiri_boliviensis_boliviensis
ENSDARG00000014041	smarcad1a	98	53.479	ENSSHAG00000001279	SMARCAD1	89	51.791	Sarcophilus_harrisii
ENSDARG00000014041	smarcad1a	100	58.949	ENSSFOG00015016814	smarcad1b	100	58.658	Scleropages_formosus
ENSDARG00000014041	smarcad1a	81	62.453	ENSSFOG00015020909	smarcad1a	99	61.713	Scleropages_formosus
ENSDARG00000014041	smarcad1a	95	71.306	ENSSMAG00000001326	smarcad1a	92	68.910	Scophthalmus_maximus
ENSDARG00000014041	smarcad1a	71	71.614	ENSSDUG00000022338	smarcad1a	88	68.826	Seriola_dumerili
ENSDARG00000014041	smarcad1a	94	71.037	ENSSLDG00000024986	smarcad1a	92	69.103	Seriola_lalandi_dorsalis
ENSDARG00000014041	smarcad1a	60	66.723	ENSSPUG00000004633	SMARCAD1	99	66.723	Sphenodon_punctatus
ENSDARG00000014041	smarcad1a	100	57.836	ENSSPAG00000001970	smarcad1a	93	69.489	Stegastes_partitus
ENSDARG00000014041	smarcad1a	92	55.727	ENSSSCG00000009193	SMARCAD1	100	54.607	Sus_scrofa
ENSDARG00000014041	smarcad1a	82	58.065	ENSTGUG00000003127	SMARCAD1	99	57.707	Taeniopygia_guttata
ENSDARG00000014041	smarcad1a	92	63.164	ENSTNIG00000017585	smarcad1a	99	62.652	Tetraodon_nigroviridis
ENSDARG00000014041	smarcad1a	90	67.857	ENSTBEG00000002789	SMARCAD1	81	68.421	Tupaia_belangeri
ENSDARG00000014041	smarcad1a	92	55.396	ENSTTRG00000000226	SMARCAD1	87	54.230	Tursiops_truncatus
ENSDARG00000014041	smarcad1a	92	55.617	ENSUAMG00000022262	SMARCAD1	85	54.516	Ursus_americanus
ENSDARG00000014041	smarcad1a	92	55.568	ENSUMAG00000004549	SMARCAD1	85	54.466	Ursus_maritimus
ENSDARG00000014041	smarcad1a	92	55.396	ENSVVUG00000007271	SMARCAD1	100	54.525	Vulpes_vulpes
ENSDARG00000014041	smarcad1a	95	50.106	ENSXETG00000019214	smarcad1	99	50.609	Xenopus_tropicalis
ENSDARG00000014041	smarcad1a	99	56.481	ENSXCOG00000005232	smarcad1a	98	56.580	Xiphophorus_couchianus
ENSDARG00000014041	smarcad1a	100	70.742	ENSXMAG00000015350	smarcad1a	88	68.793	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000729	DNA double-strand break processing	-	ISS	Process
GO:0005634	nucleus	-	IEA	Component
GO:0035861	site of double-strand break	-	ISS	Component
GO:0043044	ATP-dependent chromatin remodeling	-	ISS	Process