EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000014244 (Gene tree)
Gene ID: 321860
Gene Symbol: rbmx
Alias: fc66e11|wu:fb37c07|wu:fc66e11
Full Name: RNA binding motif protein X-linked
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 7129 bases
Position: chr14:31855592-31862720
Accession: ZDB-GENE-030131-579
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000142485	RBM1CTR	PF08081.11	6.1e-11	1	1
ENSDARP00000009865	RBM1CTR	PF08081.11	8.2e-11	1	1
ENSDARP00000009865	RRM_1	PF00076.22	1.6e-22	1	1
ENSDARP00000111610	RRM_1	PF00076.22	2.8e-22	1	1
ENSDARP00000145351	RRM_1	PF00076.22	2.8e-22	1	1
ENSDARP00000142604	RRM_1	PF00076.22	1e-10	1	1
ENSDARP00000142485	RRM_1	PF00076.22	3.3e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000138084	-	1145	-	ENSDARP00000125065	277 (aa)	-	Q7ZWA3
ENSDART00000128730	-	1560	XM_017358984	ENSDARP00000111610	379 (aa)	XP_017214473	Q7ZWA3
ENSDART00000134748	-	888	-	ENSDARP00000142485	237 (aa)	-	A0A140LGV6
ENSDART00000139839	-	1094	-	-	- (aa)	-	-
ENSDART00000172870	-	386	-	ENSDARP00000142604	116 (aa)	-	A0A140LH74
ENSDART00000144615	-	721	-	-	- (aa)	-	-
ENSDART00000007927	-	882	XM_021480966	ENSDARP00000009865	271 (aa)	XP_021336641	A0A171EBK3
ENSDART00000186597	-	1456	-	ENSDARP00000145351	379 (aa)	-	Q7ZWA3

Gene Model

Click here to download ENSDARG00000014244's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000014244's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000014244	rbmx	58	43.478	ENSDARG00000057484	srsf2a	64	41.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000014244	rbmx	100	82.474	ENSAPOG00000006496	rbmx	92	82.044	Acanthochromis_polyacanthus
ENSDARG00000014244	rbmx	100	85.507	ENSACIG00000011576	rbmx	94	82.143	Amphilophus_citrinellus
ENSDARG00000014244	rbmx	100	74.502	ENSACIG00000011598	rbmx	91	75.616	Amphilophus_citrinellus
ENSDARG00000014244	rbmx	100	77.320	ENSAOCG00000020930	rbmx	94	82.574	Amphiprion_ocellaris
ENSDARG00000014244	rbmx	100	77.778	ENSAPEG00000007316	rbmx	95	82.574	Amphiprion_percula
ENSDARG00000014244	rbmx	100	84.783	ENSATEG00000017363	rbmx	94	82.143	Anabas_testudineus
ENSDARG00000014244	rbmx	100	76.897	ENSACLG00000000098	rbmx	92	82.369	Astatotilapia_calliptera
ENSDARG00000014244	rbmx	100	90.678	ENSAMXG00000019990	rbmx	94	85.912	Astyanax_mexicanus
ENSDARG00000014244	rbmx	100	76.207	ENSCSEG00000005240	rbmx	94	82.258	Cynoglossus_semilaevis
ENSDARG00000014244	rbmx	100	80.969	ENSCVAG00000008876	rbmx	92	81.111	Cyprinodon_variegatus
ENSDARG00000014244	rbmx	100	55.839	ENSEBUG00000006778	rbmx	99	55.474	Eptatretus_burgeri
ENSDARG00000014244	rbmx	100	88.136	ENSELUG00000003600	rbmx	100	81.851	Esox_lucius
ENSDARG00000014244	rbmx	100	81.315	ENSFHEG00000016764	rbmx	92	80.833	Fundulus_heteroclitus
ENSDARG00000014244	rbmx	100	82.400	ENSGMOG00000004496	rbmx	92	75.269	Gadus_morhua
ENSDARG00000014244	rbmx	100	80.556	ENSGAFG00000019917	rbmx	92	80.278	Gambusia_affinis
ENSDARG00000014244	rbmx	100	73.469	ENSGACG00000017237	rbmx	94	79.255	Gasterosteus_aculeatus
ENSDARG00000014244	rbmx	100	77.241	ENSHBUG00000015283	rbmx	92	82.645	Haplochromis_burtoni
ENSDARG00000014244	rbmx	100	76.871	ENSHCOG00000001111	rbmx	100	77.474	Hippocampus_comes
ENSDARG00000014244	rbmx	100	87.288	ENSIPUG00000022212	rbmx	94	82.320	Ictalurus_punctatus
ENSDARG00000014244	rbmx	100	80.969	ENSKMAG00000001754	rbmx	100	78.472	Kryptolebias_marmoratus
ENSDARG00000014244	rbmx	100	86.441	ENSLBEG00000010000	rbmx	94	82.143	Labrus_bergylta
ENSDARG00000014244	rbmx	100	70.990	ENSLACG00000015261	rbmx	94	70.213	Latimeria_chalumnae
ENSDARG00000014244	rbmx	100	79.798	ENSLOCG00000015142	rbmx	94	79.156	Lepisosteus_oculatus
ENSDARG00000014244	rbmx	100	76.632	ENSMAMG00000020591	rbmx	94	81.769	Mastacembelus_armatus
ENSDARG00000014244	rbmx	100	76.897	ENSMZEG00005006432	rbmx	87	82.173	Maylandia_zebra
ENSDARG00000014244	rbmx	100	83.200	ENSMMOG00000001043	rbmx	94	82.796	Mola_mola
ENSDARG00000014244	rbmx	100	74.000	ENSMALG00000009777	rbmx	94	76.344	Monopterus_albus
ENSDARG00000014244	rbmx	100	76.897	ENSNBRG00000022154	rbmx	92	82.369	Neolamprologus_brichardi
ENSDARG00000014244	rbmx	100	76.632	ENSONIG00000002700	rbmx	92	82.692	Oreochromis_niloticus
ENSDARG00000014244	rbmx	100	81.443	ENSORLG00000001692	rbmx	92	81.319	Oryzias_latipes
ENSDARG00000014244	rbmx	100	81.443	ENSORLG00020021132	rbmx	92	81.319	Oryzias_latipes_hni
ENSDARG00000014244	rbmx	100	81.100	ENSORLG00015000330	rbmx	92	81.044	Oryzias_latipes_hsok
ENSDARG00000014244	rbmx	100	76.289	ENSOMEG00000016787	rbmx	100	81.443	Oryzias_melastigma
ENSDARG00000014244	rbmx	100	85.345	ENSPKIG00000024910	-	92	83.853	Paramormyrops_kingsleyae
ENSDARG00000014244	rbmx	100	71.898	ENSPKIG00000017611	rbmx	91	71.388	Paramormyrops_kingsleyae
ENSDARG00000014244	rbmx	100	77.143	ENSPMGG00000017906	rbmx	96	79.224	Periophthalmus_magnuspinnatus
ENSDARG00000014244	rbmx	100	80.556	ENSPFOG00000013193	rbmx	92	80.278	Poecilia_formosa
ENSDARG00000014244	rbmx	100	80.556	ENSPLAG00000010472	rbmx	92	80.278	Poecilia_latipinna
ENSDARG00000014244	rbmx	100	80.556	ENSPMEG00000007579	rbmx	92	80.278	Poecilia_mexicana
ENSDARG00000014244	rbmx	100	80.208	ENSPREG00000010279	rbmx	92	80.000	Poecilia_reticulata
ENSDARG00000014244	rbmx	100	77.241	ENSPNYG00000012536	rbmx	92	82.645	Pundamilia_nyererei
ENSDARG00000014244	rbmx	100	91.525	ENSPNAG00000019648	rbmx	94	88.154	Pygocentrus_nattereri
ENSDARG00000014244	rbmx	100	83.621	ENSSFOG00015008229	rbmx	92	83.853	Scleropages_formosus
ENSDARG00000014244	rbmx	100	78.092	ENSSFOG00015011749	-	94	75.410	Scleropages_formosus
ENSDARG00000014244	rbmx	100	79.585	ENSSMAG00000014636	rbmx	94	80.323	Scophthalmus_maximus
ENSDARG00000014244	rbmx	100	77.320	ENSSDUG00000000242	rbmx	94	83.110	Seriola_dumerili
ENSDARG00000014244	rbmx	100	77.320	ENSSLDG00000021381	rbmx	94	83.110	Seriola_lalandi_dorsalis
ENSDARG00000014244	rbmx	100	76.632	ENSSPAG00000008582	rbmx	92	83.516	Stegastes_partitus
ENSDARG00000014244	rbmx	100	79.585	ENSTRUG00000006031	rbmx	94	78.976	Takifugu_rubripes
ENSDARG00000014244	rbmx	100	77.465	ENSTNIG00000016844	rbmx	92	81.127	Tetraodon_nigroviridis
ENSDARG00000014244	rbmx	65	58.077	ENSUAMG00000011752	-	84	56.579	Ursus_americanus
ENSDARG00000014244	rbmx	65	58.077	ENSUMAG00000019276	-	84	56.579	Ursus_maritimus
ENSDARG00000014244	rbmx	100	49.828	ENSXETG00000003481	rbmx	94	52.957	Xenopus_tropicalis
ENSDARG00000014244	rbmx	100	81.250	ENSXCOG00000016084	rbmx	91	75.194	Xiphophorus_couchianus
ENSDARG00000014244	rbmx	100	80.208	ENSXMAG00000013407	rbmx	92	80.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISS	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISS	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISS	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	ISS	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005719	nuclear euchromatin	-	ISS	Component
GO:0006366	transcription by RNA polymerase II	-	ISS	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0006509	membrane protein ectodomain proteolysis	-	ISS	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0044530	supraspliceosomal complex	-	ISS	Component
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISS	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	ISS	Process
GO:0048026	positive regulation of mRNA splicing, via spliceosome	-	ISS	Process
GO:0051260	protein homooligomerization	-	ISS	Process
GO:0070062	extracellular exosome	-	ISS	Component
GO:0071013	catalytic step 2 spliceosome	-	ISS	Component
GO:0071347	cellular response to interleukin-1	-	ISS	Process