EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000014329 (Gene tree)
Gene ID: 266985
Gene Symbol: npm1a
Alias: npm1|sb:cb487
Full Name: nucleophosmin 1a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 10643 bases
Position: chr10:22034477-22045119
Accession: ZDB-GENE-021028-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000017747	Nucleoplasmin	PF03066.15	4.5e-37	1	1
ENSDARP00000091299	Nucleoplasmin	PF03066.15	1.4e-36	1	1
ENSDARP00000117965	Nucleoplasmin	PF03066.15	1.4e-36	1	1
ENSDARP00000122531	Nucleoplasmin	PF03066.15	1.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000021240	-	481	-	ENSDARP00000017747	160 (aa)	-	A0A0A0MPF3
ENSDART00000132888	-	838	-	-	- (aa)	-	-
ENSDART00000134189	-	809	-	ENSDARP00000122531	214 (aa)	-	E9QGH7
ENSDART00000100526	-	846	-	ENSDARP00000091299	281 (aa)	-	F1QGI4
ENSDART00000143461	-	519	-	-	- (aa)	-	-
ENSDART00000133304	-	1615	-	ENSDARP00000117965	279 (aa)	-	E7FCU0
ENSDART00000139208	-	549	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000014329's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000014329's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000014329	npm1a	64	42.857	ENSDARG00000103594	npm3	69	41.071
ENSDARG00000014329	npm1a	63	31.683	ENSDARG00000076391	npm2a	63	31.683
ENSDARG00000014329	npm1a	66	36.792	ENSDARG00000053963	npm2b	58	40.000
ENSDARG00000014329	npm1a	98	42.321	ENSDARG00000037675	npm1b	96	42.321

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000014329	npm1a	95	69.872	ENSAPOG00000002813	npm1a	98	61.775	Acanthochromis_polyacanthus
ENSDARG00000014329	npm1a	95	63.504	ENSACIG00000014201	npm1a	99	63.869	Amphilophus_citrinellus
ENSDARG00000014329	npm1a	78	73.600	ENSAOCG00000004978	npm1a	100	60.392	Amphiprion_ocellaris
ENSDARG00000014329	npm1a	96	69.427	ENSAPEG00000008594	npm1a	98	63.265	Amphiprion_percula
ENSDARG00000014329	npm1a	96	70.968	ENSATEG00000008885	npm1a	98	62.046	Anabas_testudineus
ENSDARG00000014329	npm1a	94	70.395	ENSACLG00000008376	npm1a	94	57.762	Astatotilapia_calliptera
ENSDARG00000014329	npm1a	100	83.333	ENSAMXG00000010155	npm1a	81	83.333	Astyanax_mexicanus
ENSDARG00000014329	npm1a	89	70.833	ENSCSEG00000011165	npm1a	91	71.528	Cynoglossus_semilaevis
ENSDARG00000014329	npm1a	99	67.361	ENSCVAG00000008960	npm1a	97	67.361	Cyprinodon_variegatus
ENSDARG00000014329	npm1a	96	37.975	ENSEBUG00000012753	npm1a	86	41.196	Eptatretus_burgeri
ENSDARG00000014329	npm1a	99	75.000	ENSELUG00000013705	npm1a	98	65.625	Esox_lucius
ENSDARG00000014329	npm1a	93	73.377	ENSFHEG00000012496	npm1a	97	65.068	Fundulus_heteroclitus
ENSDARG00000014329	npm1a	94	67.532	ENSGAFG00000013059	npm1a	98	59.797	Gambusia_affinis
ENSDARG00000014329	npm1a	99	59.574	ENSGACG00000020319	npm1a	97	58.363	Gasterosteus_aculeatus
ENSDARG00000014329	npm1a	94	71.242	ENSHBUG00000000776	npm1a	98	59.032	Haplochromis_burtoni
ENSDARG00000014329	npm1a	96	58.125	ENSHCOG00000001059	npm1a	96	49.826	Hippocampus_comes
ENSDARG00000014329	npm1a	99	83.333	ENSIPUG00000019452	npm1	99	68.151	Ictalurus_punctatus
ENSDARG00000014329	npm1a	94	72.078	ENSKMAG00000010709	npm1a	97	63.958	Kryptolebias_marmoratus
ENSDARG00000014329	npm1a	95	66.667	ENSLBEG00000008793	npm1a	98	62.199	Labrus_bergylta
ENSDARG00000014329	npm1a	99	52.083	ENSLOCG00000009683	npm1a	99	58.712	Lepisosteus_oculatus
ENSDARG00000014329	npm1a	96	71.795	ENSMAMG00000009344	npm1a	81	64.138	Mastacembelus_armatus
ENSDARG00000014329	npm1a	94	70.395	ENSMZEG00005013717	npm1a	98	60.390	Maylandia_zebra
ENSDARG00000014329	npm1a	95	65.693	ENSMMOG00000007980	npm1a	99	65.568	Mola_mola
ENSDARG00000014329	npm1a	91	68.627	ENSMALG00000001146	npm1a	96	61.512	Monopterus_albus
ENSDARG00000014329	npm1a	94	69.737	ENSNBRG00000013172	npm1a	98	58.065	Neolamprologus_brichardi
ENSDARG00000014329	npm1a	92	69.128	ENSONIG00000001860	npm1a	97	57.483	Oreochromis_niloticus
ENSDARG00000014329	npm1a	95	69.935	ENSORLG00000010179	npm1a	98	63.194	Oryzias_latipes
ENSDARG00000014329	npm1a	95	69.935	ENSORLG00020020817	npm1a	98	63.763	Oryzias_latipes_hni
ENSDARG00000014329	npm1a	95	69.935	ENSORLG00015003439	npm1a	98	63.194	Oryzias_latipes_hsok
ENSDARG00000014329	npm1a	95	69.481	ENSOMEG00000007083	npm1a	98	62.369	Oryzias_melastigma
ENSDARG00000014329	npm1a	100	57.627	ENSPKIG00000023943	npm1a	98	58.983	Paramormyrops_kingsleyae
ENSDARG00000014329	npm1a	95	69.872	ENSPFOG00000019173	npm1a	98	61.224	Poecilia_formosa
ENSDARG00000014329	npm1a	95	68.987	ENSPLAG00000001093	npm1a	98	61.905	Poecilia_latipinna
ENSDARG00000014329	npm1a	95	69.872	ENSPMEG00000012523	npm1a	98	61.224	Poecilia_mexicana
ENSDARG00000014329	npm1a	94	71.053	ENSPREG00000001647	npm1a	98	62.457	Poecilia_reticulata
ENSDARG00000014329	npm1a	94	71.711	ENSPNYG00000019321	npm1a	98	59.344	Pundamilia_nyererei
ENSDARG00000014329	npm1a	100	83.333	ENSPNAG00000026891	npm1a	99	69.759	Pygocentrus_nattereri
ENSDARG00000014329	npm1a	94	74.342	ENSSFOG00015007074	npm1a	98	62.937	Scleropages_formosus
ENSDARG00000014329	npm1a	96	71.613	ENSSMAG00000019090	npm1a	98	64.138	Scophthalmus_maximus
ENSDARG00000014329	npm1a	94	69.231	ENSSDUG00000015609	npm1a	98	62.116	Seriola_dumerili
ENSDARG00000014329	npm1a	94	69.231	ENSSLDG00000017849	npm1a	98	63.014	Seriola_lalandi_dorsalis
ENSDARG00000014329	npm1a	99	53.546	ENSSPAG00000021660	npm1a	91	72.500	Stegastes_partitus
ENSDARG00000014329	npm1a	95	71.975	ENSTRUG00000024003	npm1a	98	64.189	Takifugu_rubripes
ENSDARG00000014329	npm1a	93	73.026	ENSTNIG00000010773	npm1a	98	63.066	Tetraodon_nigroviridis
ENSDARG00000014329	npm1a	95	67.702	ENSXCOG00000005958	npm1a	100	58.484	Xiphophorus_couchianus
ENSDARG00000014329	npm1a	94	68.553	ENSXMAG00000000396	npm1a	98	59.596	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003682	chromatin binding	21873635.	IBA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	18469340.	IDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006338	chromatin remodeling	21873635.	IBA	Process
GO:0030097	hemopoiesis	20197555.	IMP	Process
GO:0042393	histone binding	21873635.	IBA	Function
GO:0042981	regulation of apoptotic process	28432080.	IGI	Process