EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000014420 (Gene tree)
Gene ID: 30732
Gene Symbol: elavl3
Alias: elav-related C|elavC|elrc|etID309927.3|huc|id:ibd1248|wu:fb77b03|zHuC
Full Name: ELAV like neuron-specific RNA binding protein 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 17812 bases
Position: chr3:46800190-46818001
Accession: ZDB-GENE-980526-76
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000012109	RRM_5	PF13893.6	2.6e-12	1	2
ENSDARP00000012109	RRM_5	PF13893.6	2.6e-12	2	2
ENSDARP00000130425	RRM_5	PF13893.6	3.2e-12	1	2
ENSDARP00000130425	RRM_5	PF13893.6	3.2e-12	2	2
ENSDARP00000030680	RRM_5	PF13893.6	5.2e-12	1	2
ENSDARP00000030680	RRM_5	PF13893.6	5.2e-12	2	2
ENSDARP00000012109	RRM_1	PF00076.22	2.2e-64	1	3
ENSDARP00000012109	RRM_1	PF00076.22	2.2e-64	2	3
ENSDARP00000012109	RRM_1	PF00076.22	2.2e-64	3	3
ENSDARP00000130425	RRM_1	PF00076.22	2.6e-64	1	3
ENSDARP00000130425	RRM_1	PF00076.22	2.6e-64	2	3
ENSDARP00000130425	RRM_1	PF00076.22	2.6e-64	3	3
ENSDARP00000030680	RRM_1	PF00076.22	6.6e-63	1	3
ENSDARP00000030680	RRM_1	PF00076.22	6.6e-63	2	3
ENSDARP00000030680	RRM_1	PF00076.22	6.6e-63	3	3
ENSDARP00000116731	RRM_1	PF00076.22	4.9e-28	1	2
ENSDARP00000116731	RRM_1	PF00076.22	4.9e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000166505	-	4469	XM_005164218	ENSDARP00000130425	358 (aa)	XP_005164275	A0A0R4IC33
ENSDART00000028610	-	3227	XM_005164219	ENSDARP00000030680	359 (aa)	XP_005164276	Q6P105
ENSDART00000013717	-	1120	XM_017353188	ENSDARP00000012109	345 (aa)	XP_017208677	F1QGN3
ENSDART00000134092	-	530	-	ENSDARP00000116731	176 (aa)	-	F1R0S9
ENSDART00000133036	-	863	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000014420's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000014420's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000014420	elavl3	86	35.632	ENSDARG00000006983	celf3b	99	35.632
ENSDARG00000014420	elavl3	76	41.860	ENSDARG00000070045	celf4	53	41.860
ENSDARG00000014420	elavl3	98	68.786	ENSDARG00000038695	elavl1a	96	72.258
ENSDARG00000014420	elavl3	92	36.145	ENSDARG00000002597	pabpc1l	67	36.145
ENSDARG00000014420	elavl3	92	37.349	ENSDARG00000017219	pabpc1a	59	37.349
ENSDARG00000014420	elavl3	98	90.173	ENSDARG00000045639	elavl4	91	83.651
ENSDARG00000014420	elavl3	78	30.986	ENSDARG00000002710	ncl	65	30.986
ENSDARG00000014420	elavl3	97	73.099	ENSDARG00000101744	elavl1b	100	70.988
ENSDARG00000014420	elavl3	90	37.179	ENSDARG00000052536	tia1	70	37.179
ENSDARG00000014420	elavl3	65	31.944	ENSDARG00000032175	puf60a	57	31.944
ENSDARG00000014420	elavl3	63	35.714	ENSDARG00000103823	rbms1b	71	35.802
ENSDARG00000014420	elavl3	78	42.553	ENSDARG00000005315	celf1	98	31.579
ENSDARG00000014420	elavl3	88	38.462	ENSDARG00000009525	tial1	73	38.462
ENSDARG00000014420	elavl3	92	37.349	ENSDARG00000021140	pabpc1b	59	37.349
ENSDARG00000014420	elavl3	80	36.145	ENSDARG00000090727	celf5b	54	36.145
ENSDARG00000014420	elavl3	60	39.216	ENSDARG00000070846	dazap1	89	37.736
ENSDARG00000014420	elavl3	89	40.698	ENSDARG00000071375	celf5a	70	35.514
ENSDARG00000014420	elavl3	87	41.489	ENSDARG00000002131	celf2	74	34.615
ENSDARG00000014420	elavl3	73	34.815	ENSDARG00000044179	rbms2a	51	35.385
ENSDARG00000014420	elavl3	99	81.319	ENSDARG00000040732	elavl2	100	82.759
ENSDARG00000014420	elavl3	84	35.196	ENSDARG00000044574	rbms3	94	36.957
ENSDARG00000014420	elavl3	85	32.298	ENSDARG00000063731	rbm45	89	32.298
ENSDARG00000014420	elavl3	90	37.179	ENSDARG00000026476	tia1l	76	37.179
ENSDARG00000014420	elavl3	92	36.145	ENSDARG00000059259	pabpc4	63	36.145
ENSDARG00000014420	elavl3	89	35.227	ENSDARG00000034668	celf3a	98	35.227
ENSDARG00000014420	elavl3	60	30.088	ENSDARG00000036162	hnrnpa0b	69	36.842

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000014420	elavl3	100	89.167	ENSG00000196361	ELAVL3	100	90.278	Homo_sapiens
ENSDARG00000014420	elavl3	99	99.708	ENSAPOG00000017565	elavl3	99	99.708	Acanthochromis_polyacanthus
ENSDARG00000014420	elavl3	99	86.798	ENSAMEG00000010487	ELAVL3	99	87.921	Ailuropoda_melanoleuca
ENSDARG00000014420	elavl3	99	99.708	ENSACIG00000024190	elavl3	99	99.708	Amphilophus_citrinellus
ENSDARG00000014420	elavl3	100	99.721	ENSAOCG00000005054	elavl3	100	99.721	Amphiprion_ocellaris
ENSDARG00000014420	elavl3	100	99.721	ENSAPEG00000011145	elavl3	100	99.721	Amphiprion_percula
ENSDARG00000014420	elavl3	98	100.000	ENSATEG00000020941	elavl3	99	99.705	Anabas_testudineus
ENSDARG00000014420	elavl3	98	92.500	ENSACAG00000016958	ELAVL3	93	92.500	Anolis_carolinensis
ENSDARG00000014420	elavl3	100	89.415	ENSANAG00000030798	ELAVL3	100	90.529	Aotus_nancymaae
ENSDARG00000014420	elavl3	100	99.420	ENSACLG00000018260	elavl3	100	99.420	Astatotilapia_calliptera
ENSDARG00000014420	elavl3	100	98.551	ENSAMXG00000040498	elavl3	100	98.551	Astyanax_mexicanus
ENSDARG00000014420	elavl3	100	89.444	ENSBTAG00000014412	ELAVL3	100	90.556	Bos_taurus
ENSDARG00000014420	elavl3	100	87.466	ENSCJAG00000005589	ELAVL3	100	88.556	Callithrix_jacchus
ENSDARG00000014420	elavl3	100	87.466	ENSCAFG00000017350	ELAVL3	100	88.556	Canis_familiaris
ENSDARG00000014420	elavl3	98	94.479	ENSCAFG00020004614	ELAVL3	98	90.223	Canis_lupus_dingo
ENSDARG00000014420	elavl3	99	87.879	ENSCHIG00000003436	ELAVL3	99	88.981	Capra_hircus
ENSDARG00000014420	elavl3	99	87.603	ENSTSYG00000036621	ELAVL3	99	88.705	Carlito_syrichta
ENSDARG00000014420	elavl3	90	74.383	ENSCAPG00000017620	ELAVL3	99	75.617	Cavia_aperea
ENSDARG00000014420	elavl3	90	74.383	ENSCPOG00000001793	ELAVL3	99	75.617	Cavia_porcellus
ENSDARG00000014420	elavl3	100	87.466	ENSCCAG00000034350	ELAVL3	100	88.556	Cebus_capucinus
ENSDARG00000014420	elavl3	100	87.466	ENSCATG00000044086	ELAVL3	100	88.556	Cercocebus_atys
ENSDARG00000014420	elavl3	100	87.193	ENSCLAG00000016404	ELAVL3	100	88.283	Chinchilla_lanigera
ENSDARG00000014420	elavl3	98	95.062	ENSCSAG00000006755	ELAVL3	100	91.739	Chlorocebus_sabaeus
ENSDARG00000014420	elavl3	98	94.798	ENSCPBG00000023982	ELAVL3	100	92.500	Chrysemys_picta_bellii
ENSDARG00000014420	elavl3	100	87.466	ENSCANG00000038728	ELAVL3	100	88.556	Colobus_angolensis_palliatus
ENSDARG00000014420	elavl3	100	86.921	ENSCGRG00001018927	Elavl3	100	88.011	Cricetulus_griseus_chok1gshd
ENSDARG00000014420	elavl3	99	87.052	ENSCGRG00000007158	Elavl3	99	88.154	Cricetulus_griseus_crigri
ENSDARG00000014420	elavl3	100	98.261	ENSCSEG00000021095	elavl3	100	98.261	Cynoglossus_semilaevis
ENSDARG00000014420	elavl3	100	99.721	ENSCVAG00000014060	elavl3	100	99.721	Cyprinodon_variegatus
ENSDARG00000014420	elavl3	99	86.501	ENSDORG00000002538	Elavl3	99	87.603	Dipodomys_ordii
ENSDARG00000014420	elavl3	50	97.059	ENSETEG00000000164	-	57	97.059	Echinops_telfairi
ENSDARG00000014420	elavl3	100	87.466	ENSEASG00005004561	ELAVL3	100	88.556	Equus_asinus_asinus
ENSDARG00000014420	elavl3	98	94.479	ENSECAG00000020594	ELAVL3	100	91.445	Equus_caballus
ENSDARG00000014420	elavl3	100	96.884	ENSELUG00000023043	elavl3	100	96.884	Esox_lucius
ENSDARG00000014420	elavl3	100	87.466	ENSFCAG00000024763	ELAVL3	100	88.556	Felis_catus
ENSDARG00000014420	elavl3	98	95.031	ENSFDAG00000008449	ELAVL3	100	86.705	Fukomys_damarensis
ENSDARG00000014420	elavl3	100	99.420	ENSFHEG00000001675	elavl3	100	99.420	Fundulus_heteroclitus
ENSDARG00000014420	elavl3	100	100.000	ENSGMOG00000003760	elavl3	100	100.000	Gadus_morhua
ENSDARG00000014420	elavl3	57	88.571	ENSGALG00000054488	-	77	65.289	Gallus_gallus
ENSDARG00000014420	elavl3	72	76.378	ENSGALG00000047364	-	100	76.378	Gallus_gallus
ENSDARG00000014420	elavl3	99	99.718	ENSGAFG00000016015	elavl3	98	99.718	Gambusia_affinis
ENSDARG00000014420	elavl3	100	99.721	ENSGACG00000013839	elavl3	100	99.721	Gasterosteus_aculeatus
ENSDARG00000014420	elavl3	99	92.727	ENSGAGG00000016141	ELAVL3	100	92.213	Gopherus_agassizii
ENSDARG00000014420	elavl3	99	87.603	ENSGGOG00000008635	ELAVL3	99	88.705	Gorilla_gorilla
ENSDARG00000014420	elavl3	100	99.420	ENSHBUG00000020978	elavl3	100	99.420	Haplochromis_burtoni
ENSDARG00000014420	elavl3	96	63.736	ENSHGLG00000019379	-	97	69.000	Heterocephalus_glaber_female
ENSDARG00000014420	elavl3	100	87.466	ENSHGLG00000015199	ELAVL3	100	88.556	Heterocephalus_glaber_female
ENSDARG00000014420	elavl3	95	85.960	ENSHGLG00100011200	ELAVL3	100	87.106	Heterocephalus_glaber_male
ENSDARG00000014420	elavl3	99	100.000	ENSHCOG00000015894	elavl3	100	98.082	Hippocampus_comes
ENSDARG00000014420	elavl3	99	99.125	ENSIPUG00000013002	elavl3	98	99.125	Ictalurus_punctatus
ENSDARG00000014420	elavl3	100	87.466	ENSSTOG00000021111	ELAVL3	100	88.556	Ictidomys_tridecemlineatus
ENSDARG00000014420	elavl3	99	88.430	ENSJJAG00000023513	Elavl3	99	88.430	Jaculus_jaculus
ENSDARG00000014420	elavl3	99	99.708	ENSKMAG00000017412	elavl3	99	99.708	Kryptolebias_marmoratus
ENSDARG00000014420	elavl3	100	98.841	ENSLBEG00000008073	elavl3	99	98.841	Labrus_bergylta
ENSDARG00000014420	elavl3	100	96.164	ENSLOCG00000007647	elavl3	100	96.164	Lepisosteus_oculatus
ENSDARG00000014420	elavl3	99	87.363	ENSLAFG00000005013	ELAVL3	99	88.462	Loxodonta_africana
ENSDARG00000014420	elavl3	100	87.466	ENSMFAG00000003692	ELAVL3	100	88.556	Macaca_fascicularis
ENSDARG00000014420	elavl3	100	87.466	ENSMMUG00000020616	ELAVL3	100	88.556	Macaca_mulatta
ENSDARG00000014420	elavl3	100	87.193	ENSMNEG00000043973	ELAVL3	100	88.283	Macaca_nemestrina
ENSDARG00000014420	elavl3	99	84.393	ENSMLEG00000013976	ELAVL3	100	83.265	Mandrillus_leucophaeus
ENSDARG00000014420	elavl3	99	99.123	ENSMAMG00000011697	elavl3	99	99.123	Mastacembelus_armatus
ENSDARG00000014420	elavl3	100	99.721	ENSMZEG00005019053	elavl3	100	99.721	Maylandia_zebra
ENSDARG00000014420	elavl3	99	87.052	ENSMAUG00000016478	Elavl3	99	88.154	Mesocricetus_auratus
ENSDARG00000014420	elavl3	99	87.603	ENSMICG00000016528	ELAVL3	99	88.705	Microcebus_murinus
ENSDARG00000014420	elavl3	100	86.921	ENSMOCG00000002046	Elavl3	100	88.011	Microtus_ochrogaster
ENSDARG00000014420	elavl3	99	99.708	ENSMMOG00000012154	elavl3	99	99.708	Mola_mola
ENSDARG00000014420	elavl3	99	91.011	ENSMODG00000006653	ELAVL3	92	91.011	Monodelphis_domestica
ENSDARG00000014420	elavl3	99	99.718	ENSMALG00000016659	elavl3	99	99.718	Monopterus_albus
ENSDARG00000014420	elavl3	98	89.489	MGP_CAROLIEiJ_G0031894	Elavl3	100	90.625	Mus_caroli
ENSDARG00000014420	elavl3	98	93.252	ENSMUSG00000003410	Elavl3	100	89.600	Mus_musculus
ENSDARG00000014420	elavl3	98	89.205	MGP_PahariEiJ_G0014760	Elavl3	100	90.341	Mus_pahari
ENSDARG00000014420	elavl3	59	89.744	MGP_SPRETEiJ_G0033017	-	51	83.478	Mus_spretus
ENSDARG00000014420	elavl3	100	87.193	ENSMPUG00000005040	ELAVL3	100	88.283	Mustela_putorius_furo
ENSDARG00000014420	elavl3	99	88.736	ENSMLUG00000016320	ELAVL3	99	88.736	Myotis_lucifugus
ENSDARG00000014420	elavl3	100	87.466	ENSNGAG00000000968	Elavl3	100	88.556	Nannospalax_galili
ENSDARG00000014420	elavl3	99	99.718	ENSNBRG00000010319	elavl3	99	99.718	Neolamprologus_brichardi
ENSDARG00000014420	elavl3	99	91.460	ENSMEUG00000016706	ELAVL3	99	91.460	Notamacropus_eugenii
ENSDARG00000014420	elavl3	98	93.865	ENSOPRG00000007373	ELAVL3	99	89.837	Ochotona_princeps
ENSDARG00000014420	elavl3	100	87.466	ENSODEG00000015790	ELAVL3	100	88.556	Octodon_degus
ENSDARG00000014420	elavl3	99	99.718	ENSONIG00000001538	elavl3	98	99.718	Oreochromis_niloticus
ENSDARG00000014420	elavl3	92	91.270	ENSOANG00000015046	ELAVL3	98	91.270	Ornithorhynchus_anatinus
ENSDARG00000014420	elavl3	100	99.441	ENSORLG00000005379	elavl3	100	99.441	Oryzias_latipes
ENSDARG00000014420	elavl3	100	99.721	ENSORLG00020004570	elavl3	100	99.721	Oryzias_latipes_hni
ENSDARG00000014420	elavl3	100	98.603	ENSORLG00015000662	elavl3	100	98.603	Oryzias_latipes_hsok
ENSDARG00000014420	elavl3	100	99.420	ENSOMEG00000023959	elavl3	100	99.420	Oryzias_melastigma
ENSDARG00000014420	elavl3	100	87.466	ENSOGAG00000007072	ELAVL3	100	88.556	Otolemur_garnettii
ENSDARG00000014420	elavl3	100	87.738	ENSOARG00000018464	ELAVL3	100	88.828	Ovis_aries
ENSDARG00000014420	elavl3	100	87.466	ENSPPAG00000033972	ELAVL3	100	88.556	Pan_paniscus
ENSDARG00000014420	elavl3	100	87.466	ENSPPRG00000005151	ELAVL3	100	88.556	Panthera_pardus
ENSDARG00000014420	elavl3	98	86.559	ENSPTIG00000013610	ELAVL3	97	85.841	Panthera_tigris_altaica
ENSDARG00000014420	elavl3	100	87.466	ENSPTRG00000010506	ELAVL3	100	88.556	Pan_troglodytes
ENSDARG00000014420	elavl3	100	87.466	ENSPANG00000005849	ELAVL3	100	88.556	Papio_anubis
ENSDARG00000014420	elavl3	100	98.883	ENSPKIG00000016207	elavl3	100	98.883	Paramormyrops_kingsleyae
ENSDARG00000014420	elavl3	100	99.710	ENSPMGG00000002016	elavl3	100	99.710	Periophthalmus_magnuspinnatus
ENSDARG00000014420	elavl3	98	94.580	ENSPFOG00000007754	elavl3	100	94.580	Poecilia_formosa
ENSDARG00000014420	elavl3	100	98.551	ENSPLAG00000001547	elavl3	100	98.551	Poecilia_latipinna
ENSDARG00000014420	elavl3	98	100.000	ENSPMEG00000010156	elavl3	99	99.705	Poecilia_mexicana
ENSDARG00000014420	elavl3	100	99.721	ENSPREG00000006971	elavl3	100	99.721	Poecilia_reticulata
ENSDARG00000014420	elavl3	95	74.556	ENSPPYG00000009583	-	98	81.343	Pongo_abelii
ENSDARG00000014420	elavl3	83	88.182	ENSPCAG00000015952	ELAVL3	60	90.909	Procavia_capensis
ENSDARG00000014420	elavl3	100	87.466	ENSPCOG00000023781	ELAVL3	100	88.556	Propithecus_coquereli
ENSDARG00000014420	elavl3	100	87.466	ENSPVAG00000014893	ELAVL3	100	88.556	Pteropus_vampyrus
ENSDARG00000014420	elavl3	100	99.420	ENSPNYG00000013186	elavl3	98	99.420	Pundamilia_nyererei
ENSDARG00000014420	elavl3	100	99.420	ENSPNAG00000003633	elavl3	100	99.420	Pygocentrus_nattereri
ENSDARG00000014420	elavl3	100	86.921	ENSRNOG00000013752	Elavl3	100	88.011	Rattus_norvegicus
ENSDARG00000014420	elavl3	100	87.466	ENSRBIG00000034762	ELAVL3	100	88.556	Rhinopithecus_bieti
ENSDARG00000014420	elavl3	90	86.400	ENSRROG00000034305	ELAVL3	99	90.435	Rhinopithecus_roxellana
ENSDARG00000014420	elavl3	99	87.603	ENSSBOG00000030047	ELAVL3	100	89.423	Saimiri_boliviensis_boliviensis
ENSDARG00000014420	elavl3	99	93.902	ENSSHAG00000005583	ELAVL3	100	93.913	Sarcophilus_harrisii
ENSDARG00000014420	elavl3	98	99.422	ENSSFOG00015023630	elavl3	100	98.817	Scleropages_formosus
ENSDARG00000014420	elavl3	98	100.000	ENSSMAG00000004671	elavl3	99	98.830	Scophthalmus_maximus
ENSDARG00000014420	elavl3	99	99.708	ENSSDUG00000020708	elavl3	99	99.708	Seriola_dumerili
ENSDARG00000014420	elavl3	99	99.708	ENSSLDG00000013769	elavl3	99	99.708	Seriola_lalandi_dorsalis
ENSDARG00000014420	elavl3	99	78.082	ENSSARG00000005949	ELAVL3	99	78.846	Sorex_araneus
ENSDARG00000014420	elavl3	99	99.128	ENSSPAG00000000990	elavl3	100	99.128	Stegastes_partitus
ENSDARG00000014420	elavl3	100	87.466	ENSSSCG00000013617	ELAVL3	100	88.556	Sus_scrofa
ENSDARG00000014420	elavl3	98	100.000	ENSTRUG00000010719	elavl3	99	99.705	Takifugu_rubripes
ENSDARG00000014420	elavl3	99	99.162	ENSTNIG00000018572	elavl3	99	99.162	Tetraodon_nigroviridis
ENSDARG00000014420	elavl3	98	83.333	ENSTBEG00000006133	ELAVL3	99	83.436	Tupaia_belangeri
ENSDARG00000014420	elavl3	100	87.193	ENSTTRG00000001789	ELAVL3	100	88.283	Tursiops_truncatus
ENSDARG00000014420	elavl3	98	95.062	ENSUAMG00000000405	ELAVL3	96	91.642	Ursus_americanus
ENSDARG00000014420	elavl3	98	86.559	ENSUMAG00000019546	ELAVL3	88	84.053	Ursus_maritimus
ENSDARG00000014420	elavl3	100	89.167	ENSVVUG00000023733	ELAVL3	100	90.278	Vulpes_vulpes
ENSDARG00000014420	elavl3	99	92.442	ENSXETG00000016741	elavl3	99	92.442	Xenopus_tropicalis
ENSDARG00000014420	elavl3	100	99.420	ENSXMAG00000018287	elavl3	100	99.420	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0019012	virion	-	IEA	Component
GO:0019013	viral nucleocapsid	-	IEA	Component
GO:0050767	regulation of neurogenesis	22595676.	IMP	Process