EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000014746 (Gene tree)
Gene ID: 449554
Gene Symbol: rbfox1
Alias: a2bp1|zgc:103635
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 445930 bases
Position: chr3:27982269-28428198
Accession: ZDB-GENE-040927-11
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000138682	Fox-1_C	PF12414.8	5.8e-44	1	1
ENSDARP00000155158	Fox-1_C	PF12414.8	5.9e-44	1	1
ENSDARP00000107099	Fox-1_C	PF12414.8	6e-44	1	1
ENSDARP00000125654	Fox-1_C	PF12414.8	2.4e-41	1	1
ENSDARP00000125654	RRM_1	PF00076.22	2.4e-18	1	1
ENSDARP00000125806	RRM_1	PF00076.22	2.7e-18	1	1
ENSDARP00000155158	RRM_1	PF00076.22	5.2e-18	1	1
ENSDARP00000138682	RRM_1	PF00076.22	5.3e-18	1	1
ENSDARP00000107099	RRM_1	PF00076.22	5.4e-18	1	1
ENSDARP00000125695	RRM_1	PF00076.22	0.0002	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000151143	-	759	-	ENSDARP00000125806	205 (aa)	-	I3ISD3
ENSDART00000191573	-	4987	XM_017354041	ENSDARP00000155158	371 (aa)	XP_017209530	A0A2R8RXA1
ENSDART00000151178	-	774	-	ENSDARP00000126220	151 (aa)	-	I3ITF6
ENSDART00000122037	-	3190	XM_017354043	ENSDARP00000107099	373 (aa)	XP_017209532	Q642J5
ENSDART00000055534	-	662	-	-	- (aa)	-	-
ENSDART00000165936	-	4963	XM_017354045	ENSDARP00000138682	368 (aa)	XP_017209534	A0A0R4IV43
ENSDART00000150888	-	944	XM_017354049	ENSDARP00000125654	233 (aa)	XP_017209538	I3IRZ3
ENSDART00000151546	-	865	-	ENSDARP00000125695	175 (aa)	-	I3IS31

Gene Model

Click here to download ENSDARG00000014746's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000014746's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000014746	rbfox1	100	71.014	ENSDARG00000074310	rbfox3b	95	72.000
ENSDARG00000014746	rbfox1	86	85.500	ENSDARG00000010083	rbfox3a	99	75.455
ENSDARG00000014746	rbfox1	71	73.770	ENSDARG00000052182	rbfox2	100	64.419
ENSDARG00000014746	rbfox1	75	74.302	ENSDARG00000021184	rbfox1l	90	53.034

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000014746	rbfox1	100	87.871	ENSG00000078328	RBFOX1	100	87.601	Homo_sapiens
ENSDARG00000014746	rbfox1	100	83.033	ENSAPOG00000003197	rbfox1	100	83.033	Acanthochromis_polyacanthus
ENSDARG00000014746	rbfox1	100	85.366	ENSAMEG00000008605	RBFOX1	87	84.332	Ailuropoda_melanoleuca
ENSDARG00000014746	rbfox1	73	81.218	ENSACIG00000005478	rbfox1	68	70.741	Amphilophus_citrinellus
ENSDARG00000014746	rbfox1	100	76.577	ENSAOCG00000008283	rbfox1	99	77.663	Amphiprion_ocellaris
ENSDARG00000014746	rbfox1	100	71.014	ENSAPEG00000010636	rbfox1	100	70.652	Amphiprion_percula
ENSDARG00000014746	rbfox1	100	74.107	ENSATEG00000007513	rbfox1	99	75.768	Anabas_testudineus
ENSDARG00000014746	rbfox1	100	87.805	ENSAPLG00000013263	RBFOX1	99	82.161	Anas_platyrhynchos
ENSDARG00000014746	rbfox1	100	83.902	ENSACAG00000004013	RBFOX1	98	80.153	Anolis_carolinensis
ENSDARG00000014746	rbfox1	99	87.912	ENSANAG00000029527	RBFOX1	97	88.430	Aotus_nancymaae
ENSDARG00000014746	rbfox1	100	90.732	ENSAMXG00000002431	rbfox1	64	90.045	Astyanax_mexicanus
ENSDARG00000014746	rbfox1	100	86.829	ENSBTAG00000007210	RBFOX1	100	79.302	Bos_taurus
ENSDARG00000014746	rbfox1	100	87.317	ENSCJAG00000017351	RBFOX1	93	86.264	Callithrix_jacchus
ENSDARG00000014746	rbfox1	100	87.317	ENSCAFG00000019082	RBFOX1	94	79.592	Canis_familiaris
ENSDARG00000014746	rbfox1	100	87.317	ENSCAFG00020024881	RBFOX1	75	77.323	Canis_lupus_dingo
ENSDARG00000014746	rbfox1	100	86.341	ENSCHIG00000023549	RBFOX1	100	79.302	Capra_hircus
ENSDARG00000014746	rbfox1	100	86.829	ENSTSYG00000005334	RBFOX1	100	88.122	Carlito_syrichta
ENSDARG00000014746	rbfox1	100	86.341	ENSCAPG00000017669	RBFOX1	100	80.977	Cavia_aperea
ENSDARG00000014746	rbfox1	100	86.341	ENSCPOG00000011314	RBFOX1	100	80.407	Cavia_porcellus
ENSDARG00000014746	rbfox1	99	87.912	ENSCCAG00000023031	RBFOX1	97	88.430	Cebus_capucinus
ENSDARG00000014746	rbfox1	100	87.317	ENSCATG00000033816	RBFOX1	97	88.430	Cercocebus_atys
ENSDARG00000014746	rbfox1	100	86.341	ENSCLAG00000012761	RBFOX1	100	80.500	Chinchilla_lanigera
ENSDARG00000014746	rbfox1	100	87.317	ENSCSAG00000008739	RBFOX1	91	78.363	Chlorocebus_sabaeus
ENSDARG00000014746	rbfox1	91	85.561	ENSCHOG00000012843	RBFOX1	64	90.769	Choloepus_hoffmanni
ENSDARG00000014746	rbfox1	99	89.130	ENSCPBG00000026626	RBFOX1	100	80.549	Chrysemys_picta_bellii
ENSDARG00000014746	rbfox1	100	87.317	ENSCANG00000033125	RBFOX1	97	88.430	Colobus_angolensis_palliatus
ENSDARG00000014746	rbfox1	100	85.366	ENSCGRG00001013729	Rbfox1	100	80.151	Cricetulus_griseus_chok1gshd
ENSDARG00000014746	rbfox1	100	85.366	ENSCGRG00000003272	Rbfox1	100	80.151	Cricetulus_griseus_crigri
ENSDARG00000014746	rbfox1	85	89.899	ENSCSEG00000008840	rbfox1	100	77.568	Cynoglossus_semilaevis
ENSDARG00000014746	rbfox1	100	87.317	ENSDNOG00000043612	RBFOX1	94	81.795	Dasypus_novemcinctus
ENSDARG00000014746	rbfox1	100	84.135	ENSDORG00000010024	Rbfox1	97	79.847	Dipodomys_ordii
ENSDARG00000014746	rbfox1	99	68.878	ENSETEG00000003771	RBFOX1	94	68.878	Echinops_telfairi
ENSDARG00000014746	rbfox1	100	86.829	ENSEASG00005011599	RBFOX1	100	79.551	Equus_asinus_asinus
ENSDARG00000014746	rbfox1	100	86.829	ENSECAG00000012667	RBFOX1	90	80.106	Equus_caballus
ENSDARG00000014746	rbfox1	100	58.602	ENSELUG00000013096	rbfox1	99	74.419	Esox_lucius
ENSDARG00000014746	rbfox1	100	86.829	ENSFCAG00000025322	RBFOX1	90	87.500	Felis_catus
ENSDARG00000014746	rbfox1	100	87.805	ENSFALG00000004027	RBFOX1	100	78.743	Ficedula_albicollis
ENSDARG00000014746	rbfox1	100	86.829	ENSFDAG00000007388	RBFOX1	100	80.653	Fukomys_damarensis
ENSDARG00000014746	rbfox1	100	95.708	ENSGALG00000034325	RBFOX1	94	79.847	Gallus_gallus
ENSDARG00000014746	rbfox1	100	87.805	ENSGAGG00000023681	RBFOX1	100	83.333	Gopherus_agassizii
ENSDARG00000014746	rbfox1	100	87.317	ENSGGOG00000016871	-	97	88.430	Gorilla_gorilla
ENSDARG00000014746	rbfox1	100	87.317	ENSHGLG00000016944	RBFOX1	100	81.000	Heterocephalus_glaber_female
ENSDARG00000014746	rbfox1	100	87.317	ENSHGLG00100003272	RBFOX1	100	81.000	Heterocephalus_glaber_male
ENSDARG00000014746	rbfox1	100	77.725	ENSHCOG00000016419	rbfox1	91	77.188	Hippocampus_comes
ENSDARG00000014746	rbfox1	100	97.854	ENSIPUG00000015215	rbfox1	100	91.168	Ictalurus_punctatus
ENSDARG00000014746	rbfox1	100	86.341	ENSSTOG00000000322	RBFOX1	100	80.653	Ictidomys_tridecemlineatus
ENSDARG00000014746	rbfox1	100	83.902	ENSJJAG00000002575	Rbfox1	100	80.151	Jaculus_jaculus
ENSDARG00000014746	rbfox1	100	78.673	ENSLBEG00000014659	rbfox1	98	80.914	Labrus_bergylta
ENSDARG00000014746	rbfox1	100	89.756	ENSLOCG00000006675	rbfox1	99	84.010	Lepisosteus_oculatus
ENSDARG00000014746	rbfox1	85	80.531	ENSLAFG00000011480	RBFOX1	100	83.819	Loxodonta_africana
ENSDARG00000014746	rbfox1	99	87.912	ENSMFAG00000036447	RBFOX1	97	88.154	Macaca_fascicularis
ENSDARG00000014746	rbfox1	99	87.912	ENSMMUG00000003458	RBFOX1	97	88.154	Macaca_mulatta
ENSDARG00000014746	rbfox1	100	94.421	ENSMNEG00000032034	RBFOX1	94	79.337	Macaca_nemestrina
ENSDARG00000014746	rbfox1	100	87.317	ENSMLEG00000015382	RBFOX1	97	88.430	Mandrillus_leucophaeus
ENSDARG00000014746	rbfox1	95	81.148	ENSMAMG00000003142	rbfox1	100	80.874	Mastacembelus_armatus
ENSDARG00000014746	rbfox1	100	87.805	ENSMGAG00000008606	RBFOX1	98	78.746	Meleagris_gallopavo
ENSDARG00000014746	rbfox1	92	57.447	ENSMAUG00000020570	Rbfox1	99	46.875	Mesocricetus_auratus
ENSDARG00000014746	rbfox1	100	87.317	ENSMICG00000034286	RBFOX1	97	88.430	Microcebus_murinus
ENSDARG00000014746	rbfox1	100	85.854	ENSMOCG00000020932	Rbfox1	100	81.039	Microtus_ochrogaster
ENSDARG00000014746	rbfox1	100	80.193	ENSMMOG00000009716	rbfox1	86	77.955	Mola_mola
ENSDARG00000014746	rbfox1	100	87.317	ENSMODG00000005826	RBFOX1	90	79.375	Monodelphis_domestica
ENSDARG00000014746	rbfox1	100	80.940	ENSMALG00000003337	rbfox1	100	78.796	Monopterus_albus
ENSDARG00000014746	rbfox1	100	85.854	MGP_CAROLIEiJ_G0020427	Rbfox1	100	80.402	Mus_caroli
ENSDARG00000014746	rbfox1	100	85.854	ENSMUSG00000008658	Rbfox1	99	86.364	Mus_musculus
ENSDARG00000014746	rbfox1	100	85.854	MGP_PahariEiJ_G0016135	Rbfox1	100	80.402	Mus_pahari
ENSDARG00000014746	rbfox1	100	85.366	MGP_SPRETEiJ_G0021321	Rbfox1	100	80.151	Mus_spretus
ENSDARG00000014746	rbfox1	100	87.317	ENSMPUG00000014822	RBFOX1	84	78.012	Mustela_putorius_furo
ENSDARG00000014746	rbfox1	85	80.889	ENSMLUG00000015896	RBFOX1	100	84.091	Myotis_lucifugus
ENSDARG00000014746	rbfox1	100	87.317	ENSNGAG00000023276	Rbfox1	100	81.491	Nannospalax_galili
ENSDARG00000014746	rbfox1	99	62.438	ENSNBRG00000011084	rbfox1	94	62.935	Neolamprologus_brichardi
ENSDARG00000014746	rbfox1	99	87.912	ENSNLEG00000010017	-	97	88.154	Nomascus_leucogenys
ENSDARG00000014746	rbfox1	100	87.317	ENSMEUG00000012525	RBFOX1	68	93.846	Notamacropus_eugenii
ENSDARG00000014746	rbfox1	100	86.341	ENSOPRG00000006199	-	76	85.253	Ochotona_princeps
ENSDARG00000014746	rbfox1	100	85.366	ENSODEG00000013166	RBFOX1	100	79.899	Octodon_degus
ENSDARG00000014746	rbfox1	100	87.805	ENSOANG00000002379	RBFOX1	91	78.655	Ornithorhynchus_anatinus
ENSDARG00000014746	rbfox1	100	86.341	ENSOCUG00000001205	-	100	82.222	Oryctolagus_cuniculus
ENSDARG00000014746	rbfox1	100	86.829	ENSOGAG00000025535	RBFOX1	99	80.759	Otolemur_garnettii
ENSDARG00000014746	rbfox1	100	73.171	ENSOARG00000005135	RBFOX1	87	71.300	Ovis_aries
ENSDARG00000014746	rbfox1	100	87.317	ENSPPAG00000036238	-	100	88.398	Pan_paniscus
ENSDARG00000014746	rbfox1	99	87.912	ENSPPRG00000006546	RBFOX1	97	88.154	Panthera_pardus
ENSDARG00000014746	rbfox1	100	84.390	ENSPTIG00000021154	RBFOX1	100	74.933	Panthera_tigris_altaica
ENSDARG00000014746	rbfox1	100	87.317	ENSPTRG00000007744	RBFOX1	97	88.430	Pan_troglodytes
ENSDARG00000014746	rbfox1	100	87.317	ENSPANG00000026500	RBFOX1	97	88.430	Papio_anubis
ENSDARG00000014746	rbfox1	100	88.293	ENSPKIG00000019353	rbfox1	88	89.259	Paramormyrops_kingsleyae
ENSDARG00000014746	rbfox1	100	96.137	ENSPKIG00000009667	-	95	88.012	Paramormyrops_kingsleyae
ENSDARG00000014746	rbfox1	100	87.805	ENSPSIG00000006523	RBFOX1	100	82.750	Pelodiscus_sinensis
ENSDARG00000014746	rbfox1	100	85.854	ENSPEMG00000017607	Rbfox1	100	80.402	Peromyscus_maniculatus_bairdii
ENSDARG00000014746	rbfox1	100	79.231	ENSPCIG00000026887	RBFOX1	100	80.069	Phascolarctos_cinereus
ENSDARG00000014746	rbfox1	100	87.317	ENSPPYG00000007079	-	84	78.313	Pongo_abelii
ENSDARG00000014746	rbfox1	100	75.610	ENSPCAG00000002630	RBFOX1	93	70.940	Procavia_capensis
ENSDARG00000014746	rbfox1	100	87.317	ENSPCOG00000025687	RBFOX1	97	88.430	Propithecus_coquereli
ENSDARG00000014746	rbfox1	100	84.878	ENSPVAG00000013467	RBFOX1	94	75.765	Pteropus_vampyrus
ENSDARG00000014746	rbfox1	95	88.108	ENSPNAG00000023109	rbfox1	100	87.838	Pygocentrus_nattereri
ENSDARG00000014746	rbfox1	100	85.366	ENSRNOG00000002827	Rbfox1	94	80.357	Rattus_norvegicus
ENSDARG00000014746	rbfox1	100	87.317	ENSRBIG00000044478	RBFOX1	100	88.398	Rhinopithecus_bieti
ENSDARG00000014746	rbfox1	100	87.317	ENSRROG00000044411	RBFOX1	97	88.430	Rhinopithecus_roxellana
ENSDARG00000014746	rbfox1	100	86.829	ENSSBOG00000033726	RBFOX1	97	87.879	Saimiri_boliviensis_boliviensis
ENSDARG00000014746	rbfox1	100	91.880	ENSSHAG00000009257	RBFOX1	100	81.156	Sarcophilus_harrisii
ENSDARG00000014746	rbfox1	100	75.701	ENSSFOG00015009955	-	84	76.119	Scleropages_formosus
ENSDARG00000014746	rbfox1	100	87.805	ENSSFOG00015023675	rbfox1	100	74.531	Scleropages_formosus
ENSDARG00000014746	rbfox1	99	83.073	ENSSMAG00000015505	rbfox1	96	82.267	Scophthalmus_maximus
ENSDARG00000014746	rbfox1	100	79.808	ENSSDUG00000016413	rbfox1	100	79.032	Seriola_dumerili
ENSDARG00000014746	rbfox1	100	79.808	ENSSLDG00000009353	rbfox1	97	78.065	Seriola_lalandi_dorsalis
ENSDARG00000014746	rbfox1	100	86.538	ENSSPUG00000009732	RBFOX1	87	83.439	Sphenodon_punctatus
ENSDARG00000014746	rbfox1	100	80.193	ENSSPAG00000009723	rbfox1	100	81.842	Stegastes_partitus
ENSDARG00000014746	rbfox1	100	85.854	ENSSSCG00000007917	RBFOX1	91	80.371	Sus_scrofa
ENSDARG00000014746	rbfox1	100	87.805	ENSTGUG00000004562	RBFOX1	100	83.077	Taeniopygia_guttata
ENSDARG00000014746	rbfox1	99	81.937	ENSTRUG00000020940	rbfox1	100	82.723	Takifugu_rubripes
ENSDARG00000014746	rbfox1	85	59.426	ENSTNIG00000002567	rbfox1	100	65.972	Tetraodon_nigroviridis
ENSDARG00000014746	rbfox1	66	92.593	ENSTBEG00000009169	-	56	92.593	Tupaia_belangeri
ENSDARG00000014746	rbfox1	100	85.854	ENSTTRG00000005700	RBFOX1	94	78.316	Tursiops_truncatus
ENSDARG00000014746	rbfox1	100	87.317	ENSUAMG00000024633	RBFOX1	100	78.333	Ursus_americanus
ENSDARG00000014746	rbfox1	100	87.317	ENSUMAG00000003579	RBFOX1	100	72.118	Ursus_maritimus
ENSDARG00000014746	rbfox1	82	79.358	ENSVPAG00000001284	RBFOX1	74	80.583	Vicugna_pacos
ENSDARG00000014746	rbfox1	100	87.317	ENSVVUG00000017311	RBFOX1	90	87.772	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	26116573.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007399	nervous system development	21873635.	IBA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0021854	hypothalamus development	18077674.	IMP	Process
GO:0043484	regulation of RNA splicing	-	IEA	Process
GO:0043484	regulation of RNA splicing	26116573.	IMP	Process
GO:0060047	heart contraction	26116573.	IMP	Process