EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000015206 (Gene tree)
Gene ID: 566326
Gene Symbol: hnrnpua
Alias: fc51c09|wu:fc51c09
Full Name: heterogeneous nuclear ribonucleoprotein Ua
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 24895 bases
Position: chr17:11470572-11495466
Accession: ZDB-GENE-030131-3731
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000020535	SAP	PF02037.27	3.3e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000020598	-	5924	XM_005158649	ENSDARP00000020535	760 (aa)	XP_005158706	E7F3J2

Gene Model

Click here to download ENSDARG00000015206's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000015206's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000015206	hnrnpua	77	46.090	ENSDARG00000040564	hnrnpul1	97	39.175
ENSDARG00000015206	hnrnpua	57	40.503	ENSDARG00000056830	si:ch211-107m4.1	60	41.190
ENSDARG00000015206	hnrnpua	78	46.406	ENSDARG00000079780	hnrnpul1l	76	57.534
ENSDARG00000015206	hnrnpua	100	58.904	ENSDARG00000004735	hnrnpub	100	60.247

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000015206	hnrnpua	89	62.319	ENSG00000153187	HNRNPU	99	65.436	Homo_sapiens
ENSDARG00000015206	hnrnpua	100	61.423	ENSAPOG00000017400	hnrnpub	100	62.765	Acanthochromis_polyacanthus
ENSDARG00000015206	hnrnpua	89	62.319	ENSAMEG00000009145	HNRNPU	79	62.319	Ailuropoda_melanoleuca
ENSDARG00000015206	hnrnpua	98	64.058	ENSACIG00000012138	hnrnpub	97	65.049	Amphilophus_citrinellus
ENSDARG00000015206	hnrnpua	100	61.084	ENSAOCG00000015843	hnrnpub	100	62.330	Amphiprion_ocellaris
ENSDARG00000015206	hnrnpua	100	61.084	ENSAPEG00000014679	hnrnpub	100	62.330	Amphiprion_percula
ENSDARG00000015206	hnrnpua	92	62.775	ENSATEG00000016178	hnrnpub	97	61.654	Anabas_testudineus
ENSDARG00000015206	hnrnpua	88	68.000	ENSACAG00000004511	HNRNPU	76	68.000	Anolis_carolinensis
ENSDARG00000015206	hnrnpua	94	59.003	ENSANAG00000033895	-	81	62.319	Aotus_nancymaae
ENSDARG00000015206	hnrnpua	100	59.181	ENSACLG00000008165	hnrnpub	100	61.097	Astatotilapia_calliptera
ENSDARG00000015206	hnrnpua	89	62.319	ENSBTAG00000007606	HNRNPU	78	62.319	Bos_taurus
ENSDARG00000015206	hnrnpua	89	62.319	ENSCJAG00000016914	HNRNPU	78	62.319	Callithrix_jacchus
ENSDARG00000015206	hnrnpua	89	62.319	ENSCAFG00020000918	HNRNPU	80	62.319	Canis_lupus_dingo
ENSDARG00000015206	hnrnpua	89	62.319	ENSCHIG00000004900	HNRNPU	80	62.319	Capra_hircus
ENSDARG00000015206	hnrnpua	89	62.319	ENSCPOG00000011887	HNRNPU	79	62.319	Cavia_porcellus
ENSDARG00000015206	hnrnpua	94	59.164	ENSCCAG00000037859	-	81	62.319	Cebus_capucinus
ENSDARG00000015206	hnrnpua	89	62.319	ENSCATG00000035273	HNRNPU	81	62.319	Cercocebus_atys
ENSDARG00000015206	hnrnpua	89	62.319	ENSCLAG00000007100	HNRNPU	79	62.319	Chinchilla_lanigera
ENSDARG00000015206	hnrnpua	92	59.003	ENSCSAG00000009219	HNRNPU	80	62.319	Chlorocebus_sabaeus
ENSDARG00000015206	hnrnpua	86	76.087	ENSCHOG00000001387	HNRNPU	76	76.087	Choloepus_hoffmanni
ENSDARG00000015206	hnrnpua	97	56.757	ENSCPBG00000009415	HNRNPU	75	78.261	Chrysemys_picta_bellii
ENSDARG00000015206	hnrnpua	92	59.003	ENSCANG00000022780	HNRNPU	79	62.319	Colobus_angolensis_palliatus
ENSDARG00000015206	hnrnpua	92	59.098	ENSCGRG00001020525	Hnrnpu	81	64.706	Cricetulus_griseus_chok1gshd
ENSDARG00000015206	hnrnpua	85	60.958	ENSCSEG00000010804	hnrnpub	98	57.604	Cynoglossus_semilaevis
ENSDARG00000015206	hnrnpua	92	54.430	ENSCVAG00000004280	hnrnpub	100	51.828	Cyprinodon_variegatus
ENSDARG00000015206	hnrnpua	99	54.016	ENSDNOG00000000215	HNRNPU	86	76.087	Dasypus_novemcinctus
ENSDARG00000015206	hnrnpua	81	59.325	ENSDORG00000015491	Hnrnpu	74	60.033	Dipodomys_ordii
ENSDARG00000015206	hnrnpua	97	58.682	ENSETEG00000014565	HNRNPU	81	61.111	Echinops_telfairi
ENSDARG00000015206	hnrnpua	89	62.319	ENSEASG00005003017	HNRNPU	80	62.319	Equus_asinus_asinus
ENSDARG00000015206	hnrnpua	89	62.319	ENSECAG00000007955	HNRNPU	80	62.319	Equus_caballus
ENSDARG00000015206	hnrnpua	100	62.677	ENSELUG00000011966	hnrnpua	100	62.291	Esox_lucius
ENSDARG00000015206	hnrnpua	100	58.422	ENSELUG00000010733	hnrnpub	100	59.740	Esox_lucius
ENSDARG00000015206	hnrnpua	89	62.319	ENSFCAG00000002156	HNRNPU	79	62.319	Felis_catus
ENSDARG00000015206	hnrnpua	99	57.651	ENSFDAG00000006026	HNRNPU	98	62.319	Fukomys_damarensis
ENSDARG00000015206	hnrnpua	100	56.506	ENSFHEG00000022639	hnrnpub	100	59.196	Fundulus_heteroclitus
ENSDARG00000015206	hnrnpua	100	56.064	ENSGMOG00000001755	hnrnpub	99	57.940	Gadus_morhua
ENSDARG00000015206	hnrnpua	93	58.506	ENSGALG00000010671	HNRNPU	74	80.435	Gallus_gallus
ENSDARG00000015206	hnrnpua	84	57.637	ENSGAFG00000009369	hnrnpub	78	63.110	Gambusia_affinis
ENSDARG00000015206	hnrnpua	88	87.500	ENSGACG00000004679	hnrnpub	79	87.500	Gasterosteus_aculeatus
ENSDARG00000015206	hnrnpua	90	62.319	ENSGGOG00000004061	HNRNPU	81	62.319	Gorilla_gorilla
ENSDARG00000015206	hnrnpua	100	59.305	ENSHBUG00000012290	hnrnpub	100	61.222	Haplochromis_burtoni
ENSDARG00000015206	hnrnpua	89	63.768	ENSHGLG00000010594	-	81	63.768	Heterocephalus_glaber_female
ENSDARG00000015206	hnrnpua	88	76.087	ENSHGLG00100015093	HNRNPU	96	76.087	Heterocephalus_glaber_male
ENSDARG00000015206	hnrnpua	84	58.224	ENSHCOG00000020091	hnrnpub	78	61.669	Hippocampus_comes
ENSDARG00000015206	hnrnpua	80	85.106	ENSIPUG00000007749	hnrnpu	91	85.106	Ictalurus_punctatus
ENSDARG00000015206	hnrnpua	87	83.721	ENSJJAG00000011371	Hnrnpu	79	65.672	Jaculus_jaculus
ENSDARG00000015206	hnrnpua	100	58.987	ENSKMAG00000004532	hnrnpub	100	60.219	Kryptolebias_marmoratus
ENSDARG00000015206	hnrnpua	85	62.719	ENSLBEG00000022520	hnrnpub	100	60.488	Labrus_bergylta
ENSDARG00000015206	hnrnpua	82	53.503	ENSLACG00000017463	HNRNPU	72	53.984	Latimeria_chalumnae
ENSDARG00000015206	hnrnpua	88	89.362	ENSLOCG00000016652	hnrnpua	99	66.300	Lepisosteus_oculatus
ENSDARG00000015206	hnrnpua	97	59.164	ENSLAFG00000021377	HNRNPU	81	62.319	Loxodonta_africana
ENSDARG00000015206	hnrnpua	89	62.319	ENSMFAG00000037308	HNRNPU	81	62.319	Macaca_fascicularis
ENSDARG00000015206	hnrnpua	89	62.319	ENSMMUG00000021098	HNRNPU	81	62.319	Macaca_mulatta
ENSDARG00000015206	hnrnpua	89	62.319	ENSMNEG00000043645	HNRNPU	81	62.319	Macaca_nemestrina
ENSDARG00000015206	hnrnpua	100	60.988	ENSMAMG00000007196	hnrnpub	100	60.859	Mastacembelus_armatus
ENSDARG00000015206	hnrnpua	100	59.181	ENSMZEG00005003185	hnrnpub	100	61.097	Maylandia_zebra
ENSDARG00000015206	hnrnpua	92	59.098	ENSMAUG00000008842	Hnrnpu	81	64.706	Mesocricetus_auratus
ENSDARG00000015206	hnrnpua	97	59.325	ENSMICG00000004616	HNRNPU	81	62.319	Microcebus_murinus
ENSDARG00000015206	hnrnpua	89	64.706	ENSMOCG00000015623	Hnrnpu	81	64.706	Microtus_ochrogaster
ENSDARG00000015206	hnrnpua	91	57.795	ENSMODG00000006515	HNRNPU	78	62.857	Monodelphis_domestica
ENSDARG00000015206	hnrnpua	80	65.354	ENSMALG00000018243	hnrnpub	98	61.211	Monopterus_albus
ENSDARG00000015206	hnrnpua	89	64.706	MGP_CAROLIEiJ_G0014962	Hnrnpu	81	64.706	Mus_caroli
ENSDARG00000015206	hnrnpua	89	64.706	ENSMUSG00000039630	Hnrnpu	81	64.706	Mus_musculus
ENSDARG00000015206	hnrnpua	89	64.706	MGP_PahariEiJ_G0028193	Hnrnpu	81	64.706	Mus_pahari
ENSDARG00000015206	hnrnpua	89	64.706	MGP_SPRETEiJ_G0015761	Hnrnpu	81	64.706	Mus_spretus
ENSDARG00000015206	hnrnpua	89	63.768	ENSMLUG00000000475	HNRNPU	81	63.768	Myotis_lucifugus
ENSDARG00000015206	hnrnpua	99	52.606	ENSNGAG00000019075	Hnrnpu	81	64.706	Nannospalax_galili
ENSDARG00000015206	hnrnpua	100	59.057	ENSNBRG00000017855	hnrnpub	100	60.848	Neolamprologus_brichardi
ENSDARG00000015206	hnrnpua	85	62.857	ENSMEUG00000000541	HNRNPU	77	62.857	Notamacropus_eugenii
ENSDARG00000015206	hnrnpua	52	70.950	ENSODEG00000014458	-	72	72.892	Octodon_degus
ENSDARG00000015206	hnrnpua	100	60.151	ENSONIG00000001260	hnrnpub	100	61.392	Oreochromis_niloticus
ENSDARG00000015206	hnrnpua	88	62.319	ENSOCUG00000014469	HNRNPU	77	60.100	Oryctolagus_cuniculus
ENSDARG00000015206	hnrnpua	100	59.453	ENSORLG00000016114	hnrnpub	100	59.805	Oryzias_latipes
ENSDARG00000015206	hnrnpua	84	62.150	ENSORLG00020005363	hnrnpub	100	59.683	Oryzias_latipes_hni
ENSDARG00000015206	hnrnpua	84	62.003	ENSORLG00015001190	hnrnpub	100	59.562	Oryzias_latipes_hsok
ENSDARG00000015206	hnrnpua	84	61.968	ENSOMEG00000014951	hnrnpub	100	60.198	Oryzias_melastigma
ENSDARG00000015206	hnrnpua	97	59.164	ENSOGAG00000014024	HNRNPU	80	62.319	Otolemur_garnettii
ENSDARG00000015206	hnrnpua	89	62.687	ENSOARG00000004985	HNRNPU	88	61.765	Ovis_aries
ENSDARG00000015206	hnrnpua	89	62.319	ENSPPAG00000038652	HNRNPU	81	62.319	Pan_paniscus
ENSDARG00000015206	hnrnpua	90	62.319	ENSPPRG00000002662	HNRNPU	78	62.319	Panthera_pardus
ENSDARG00000015206	hnrnpua	89	62.319	ENSPTRG00000002182	HNRNPU	81	62.319	Pan_troglodytes
ENSDARG00000015206	hnrnpua	89	62.319	ENSPANG00000011643	HNRNPU	81	62.319	Papio_anubis
ENSDARG00000015206	hnrnpua	100	69.462	ENSPKIG00000022332	hnrnpub	100	69.674	Paramormyrops_kingsleyae
ENSDARG00000015206	hnrnpua	100	69.527	ENSPKIG00000006885	hnrnpua	100	69.625	Paramormyrops_kingsleyae
ENSDARG00000015206	hnrnpua	91	59.032	ENSPCIG00000008657	HNRNPU	78	62.857	Phascolarctos_cinereus
ENSDARG00000015206	hnrnpua	100	55.676	ENSPFOG00000002908	hnrnpub	100	60.195	Poecilia_formosa
ENSDARG00000015206	hnrnpua	100	58.131	ENSPLAG00000004160	hnrnpub	100	60.024	Poecilia_latipinna
ENSDARG00000015206	hnrnpua	80	57.488	ENSPCOG00000003883	-	74	59.054	Propithecus_coquereli
ENSDARG00000015206	hnrnpua	97	59.325	ENSPCOG00000018655	-	81	62.319	Propithecus_coquereli
ENSDARG00000015206	hnrnpua	89	62.319	ENSPVAG00000002581	HNRNPU	78	62.319	Pteropus_vampyrus
ENSDARG00000015206	hnrnpua	100	59.429	ENSPNYG00000021642	hnrnpub	100	61.347	Pundamilia_nyererei
ENSDARG00000015206	hnrnpua	100	65.356	ENSPNAG00000001055	hnrnpub	100	65.361	Pygocentrus_nattereri
ENSDARG00000015206	hnrnpua	89	64.706	ENSRNOG00000033790	Hnrnpu	81	64.706	Rattus_norvegicus
ENSDARG00000015206	hnrnpua	94	58.360	ENSRBIG00000031519	HNRNPU	81	62.319	Rhinopithecus_bieti
ENSDARG00000015206	hnrnpua	95	58.909	ENSRROG00000041642	HNRNPU	81	62.319	Rhinopithecus_roxellana
ENSDARG00000015206	hnrnpua	100	70.545	ENSSFOG00015001124	hnrnpub	100	68.953	Scleropages_formosus
ENSDARG00000015206	hnrnpua	100	68.025	ENSSFOG00015019004	hnrnpu	100	67.742	Scleropages_formosus
ENSDARG00000015206	hnrnpua	84	60.116	ENSSMAG00000003607	hnrnpub	100	58.608	Scophthalmus_maximus
ENSDARG00000015206	hnrnpua	84	63.235	ENSSDUG00000005912	hnrnpub	100	61.220	Seriola_dumerili
ENSDARG00000015206	hnrnpua	85	63.397	ENSSLDG00000004899	hnrnpub	100	61.847	Seriola_lalandi_dorsalis
ENSDARG00000015206	hnrnpua	87	80.488	ENSSPUG00000011393	HNRNPU	77	70.588	Sphenodon_punctatus
ENSDARG00000015206	hnrnpua	92	63.776	ENSSPAG00000011853	hnrnpub	100	61.834	Stegastes_partitus
ENSDARG00000015206	hnrnpua	90	59.164	ENSSSCG00000010877	HNRNPU	81	59.869	Sus_scrofa
ENSDARG00000015206	hnrnpua	100	58.103	ENSTRUG00000007759	hnrnpub	78	64.230	Takifugu_rubripes
ENSDARG00000015206	hnrnpua	100	56.730	ENSTNIG00000009725	hnrnpub	100	59.016	Tetraodon_nigroviridis
ENSDARG00000015206	hnrnpua	99	54.337	ENSUAMG00000021120	HNRNPU	78	62.319	Ursus_americanus
ENSDARG00000015206	hnrnpua	100	52.559	ENSUMAG00000012322	HNRNPU	86	60.359	Ursus_maritimus
ENSDARG00000015206	hnrnpua	82	62.319	ENSVPAG00000010520	HNRNPU	85	62.319	Vicugna_pacos
ENSDARG00000015206	hnrnpua	89	62.319	ENSVVUG00000026524	HNRNPU	80	62.319	Vulpes_vulpes
ENSDARG00000015206	hnrnpua	99	50.299	ENSXETG00000011386	hnrnpu	81	68.254	Xenopus_tropicalis
ENSDARG00000015206	hnrnpua	100	55.461	ENSXMAG00000010356	hnrnpub	100	60.049	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component