EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000015239 (Gene tree)
Gene ID: 321544
Gene Symbol: prpf19
Alias: fb18f09|prp19|wu:fb18f09|zgc:56158
Full Name: pre-mRNA processing factor 19
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 13435 bases
Position: chr14:16287968-16301402
Accession: ZDB-GENE-030131-263
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000097371	Prp19	PF08606.11	2.2e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000171906	-	741	-	-	- (aa)	-	-
ENSDART00000163590	-	776	-	-	- (aa)	-	-
ENSDART00000106593	-	2128	-	ENSDARP00000097371	505 (aa)	-	Q7ZV92

Gene Model

Click here to download ENSDARG00000015239's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG
dre04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000015239's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000015239	prpf19	61	31.724	ENSDARG00000052344	tbl3	58	31.724

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000015239	prpf19	100	85.347	ENSG00000110107	PRPF19	100	88.571	Homo_sapiens
ENSDARG00000015239	prpf19	100	94.059	ENSAPOG00000017823	prpf19	100	94.059	Acanthochromis_polyacanthus
ENSDARG00000015239	prpf19	100	84.940	ENSAMEG00000007375	PRPF19	99	84.940	Ailuropoda_melanoleuca
ENSDARG00000015239	prpf19	99	92.063	ENSACIG00000015876	prpf19	99	92.063	Amphilophus_citrinellus
ENSDARG00000015239	prpf19	100	94.059	ENSAOCG00000020444	prpf19	100	94.059	Amphiprion_ocellaris
ENSDARG00000015239	prpf19	100	94.059	ENSAPEG00000016076	prpf19	100	94.059	Amphiprion_percula
ENSDARG00000015239	prpf19	100	94.257	ENSATEG00000008840	prpf19	100	94.257	Anabas_testudineus
ENSDARG00000015239	prpf19	100	85.743	ENSACAG00000017797	PRPF19	100	85.743	Anolis_carolinensis
ENSDARG00000015239	prpf19	100	85.149	ENSANAG00000021762	PRPF19	100	85.149	Aotus_nancymaae
ENSDARG00000015239	prpf19	100	93.663	ENSACLG00000009416	prpf19	100	93.663	Astatotilapia_calliptera
ENSDARG00000015239	prpf19	100	97.030	ENSAMXG00000011547	prpf19	100	97.030	Astyanax_mexicanus
ENSDARG00000015239	prpf19	100	85.347	ENSBTAG00000014366	PRPF19	100	85.347	Bos_taurus
ENSDARG00000015239	prpf19	100	52.268	WBGene00020423	prp-19	100	52.268	Caenorhabditis_elegans
ENSDARG00000015239	prpf19	100	85.149	ENSCJAG00000016509	PRPF19	100	85.149	Callithrix_jacchus
ENSDARG00000015239	prpf19	100	85.149	ENSCAFG00000016438	PRPF19	98	85.149	Canis_familiaris
ENSDARG00000015239	prpf19	100	85.149	ENSCAFG00020012565	PRPF19	100	85.149	Canis_lupus_dingo
ENSDARG00000015239	prpf19	100	85.347	ENSCHIG00000018281	PRPF19	100	85.347	Capra_hircus
ENSDARG00000015239	prpf19	99	85.200	ENSTSYG00000006860	PRPF19	99	85.200	Carlito_syrichta
ENSDARG00000015239	prpf19	99	85.600	ENSCAPG00000016225	PRPF19	100	85.600	Cavia_aperea
ENSDARG00000015239	prpf19	100	85.545	ENSCPOG00000020688	PRPF19	100	85.545	Cavia_porcellus
ENSDARG00000015239	prpf19	100	85.149	ENSCCAG00000025839	PRPF19	100	85.149	Cebus_capucinus
ENSDARG00000015239	prpf19	100	85.347	ENSCATG00000041921	PRPF19	100	85.347	Cercocebus_atys
ENSDARG00000015239	prpf19	99	85.743	ENSCLAG00000003338	PRPF19	100	85.743	Chinchilla_lanigera
ENSDARG00000015239	prpf19	100	85.347	ENSCSAG00000006254	PRPF19	100	85.347	Chlorocebus_sabaeus
ENSDARG00000015239	prpf19	62	75.641	ENSCHOG00000005840	PRPF19	100	75.641	Choloepus_hoffmanni
ENSDARG00000015239	prpf19	100	84.842	ENSCPBG00000027061	PRPF19	100	84.356	Chrysemys_picta_bellii
ENSDARG00000015239	prpf19	99	68.027	ENSCING00000016625	-	100	66.667	Ciona_intestinalis
ENSDARG00000015239	prpf19	99	70.060	ENSCSAVG00000002027	-	100	70.060	Ciona_savignyi
ENSDARG00000015239	prpf19	99	84.314	ENSCANG00000027155	PRPF19	99	39.961	Colobus_angolensis_palliatus
ENSDARG00000015239	prpf19	100	85.347	ENSCGRG00001002699	Prpf19	100	85.347	Cricetulus_griseus_chok1gshd
ENSDARG00000015239	prpf19	100	84.950	ENSCGRG00000008964	Prpf19	100	84.950	Cricetulus_griseus_crigri
ENSDARG00000015239	prpf19	100	93.465	ENSCSEG00000010411	prpf19	100	93.465	Cynoglossus_semilaevis
ENSDARG00000015239	prpf19	100	91.683	ENSCVAG00000012011	prpf19	100	91.683	Cyprinodon_variegatus
ENSDARG00000015239	prpf19	100	85.347	ENSDNOG00000005797	PRPF19	100	85.347	Dasypus_novemcinctus
ENSDARG00000015239	prpf19	100	85.149	ENSDORG00000006906	Prpf19	100	85.149	Dipodomys_ordii
ENSDARG00000015239	prpf19	100	67.653	FBgn0261119	Prp19	99	66.733	Drosophila_melanogaster
ENSDARG00000015239	prpf19	89	88.318	ENSETEG00000012295	PRPF19	87	88.318	Echinops_telfairi
ENSDARG00000015239	prpf19	83	77.672	ENSEBUG00000013075	prpf19	100	76.247	Eptatretus_burgeri
ENSDARG00000015239	prpf19	100	84.906	ENSEASG00005008056	PRPF19	98	84.906	Equus_asinus_asinus
ENSDARG00000015239	prpf19	100	85.149	ENSECAG00000007322	PRPF19	100	85.149	Equus_caballus
ENSDARG00000015239	prpf19	100	91.089	ENSELUG00000020276	-	100	91.089	Esox_lucius
ENSDARG00000015239	prpf19	100	86.337	ENSELUG00000004578	prpf19	100	86.139	Esox_lucius
ENSDARG00000015239	prpf19	100	85.149	ENSFCAG00000013668	PRPF19	100	85.149	Felis_catus
ENSDARG00000015239	prpf19	100	83.762	ENSFALG00000012084	PRPF19	100	83.762	Ficedula_albicollis
ENSDARG00000015239	prpf19	84	84.634	ENSFDAG00000009420	PRPF19	100	81.390	Fukomys_damarensis
ENSDARG00000015239	prpf19	100	92.079	ENSFHEG00000022135	prpf19	100	92.079	Fundulus_heteroclitus
ENSDARG00000015239	prpf19	100	94.257	ENSGMOG00000014756	prpf19	100	94.257	Gadus_morhua
ENSDARG00000015239	prpf19	100	83.762	ENSGALG00000036530	PRPF19	100	83.762	Gallus_gallus
ENSDARG00000015239	prpf19	100	91.485	ENSGAFG00000008931	prpf19	100	91.485	Gambusia_affinis
ENSDARG00000015239	prpf19	100	93.267	ENSGACG00000017976	prpf19	100	93.267	Gasterosteus_aculeatus
ENSDARG00000015239	prpf19	100	84.554	ENSGAGG00000013328	PRPF19	100	84.554	Gopherus_agassizii
ENSDARG00000015239	prpf19	100	85.347	ENSGGOG00000008648	PRPF19	100	85.347	Gorilla_gorilla
ENSDARG00000015239	prpf19	100	93.663	ENSHBUG00000008394	prpf19	100	93.663	Haplochromis_burtoni
ENSDARG00000015239	prpf19	100	85.347	ENSHGLG00000003934	PRPF19	100	85.347	Heterocephalus_glaber_female
ENSDARG00000015239	prpf19	99	69.412	ENSHGLG00100010649	PRPF19	100	68.876	Heterocephalus_glaber_male
ENSDARG00000015239	prpf19	100	91.683	ENSHCOG00000016720	prpf19	100	91.683	Hippocampus_comes
ENSDARG00000015239	prpf19	100	96.040	ENSIPUG00000013084	prpf19	100	96.040	Ictalurus_punctatus
ENSDARG00000015239	prpf19	100	84.950	ENSSTOG00000001598	PRPF19	100	84.950	Ictidomys_tridecemlineatus
ENSDARG00000015239	prpf19	100	85.545	ENSJJAG00000020609	Prpf19	100	85.545	Jaculus_jaculus
ENSDARG00000015239	prpf19	100	91.485	ENSKMAG00000010257	prpf19	100	91.485	Kryptolebias_marmoratus
ENSDARG00000015239	prpf19	100	93.267	ENSLBEG00000027436	prpf19	100	93.267	Labrus_bergylta
ENSDARG00000015239	prpf19	100	84.158	ENSLACG00000003434	PRPF19	100	84.158	Latimeria_chalumnae
ENSDARG00000015239	prpf19	91	79.149	ENSLOCG00000008123	prpf19	100	79.149	Lepisosteus_oculatus
ENSDARG00000015239	prpf19	100	82.375	ENSLAFG00000002644	PRPF19	100	82.375	Loxodonta_africana
ENSDARG00000015239	prpf19	100	85.347	ENSMFAG00000036743	PRPF19	100	85.347	Macaca_fascicularis
ENSDARG00000015239	prpf19	100	85.347	ENSMMUG00000014530	PRPF19	100	85.347	Macaca_mulatta
ENSDARG00000015239	prpf19	100	85.347	ENSMNEG00000044485	PRPF19	100	85.347	Macaca_nemestrina
ENSDARG00000015239	prpf19	100	85.347	ENSMLEG00000043312	PRPF19	100	85.347	Mandrillus_leucophaeus
ENSDARG00000015239	prpf19	100	94.059	ENSMAMG00000006843	prpf19	100	94.181	Mastacembelus_armatus
ENSDARG00000015239	prpf19	100	93.663	ENSMZEG00005013356	prpf19	100	93.663	Maylandia_zebra
ENSDARG00000015239	prpf19	98	79.000	ENSMGAG00000003180	PRPF19	100	79.000	Meleagris_gallopavo
ENSDARG00000015239	prpf19	100	84.752	ENSMAUG00000012585	Prpf19	100	84.752	Mesocricetus_auratus
ENSDARG00000015239	prpf19	100	85.347	ENSMICG00000011236	PRPF19	100	85.347	Microcebus_murinus
ENSDARG00000015239	prpf19	100	85.347	ENSMOCG00000010383	Prpf19	100	85.347	Microtus_ochrogaster
ENSDARG00000015239	prpf19	100	94.653	ENSMMOG00000003138	prpf19	100	94.455	Mola_mola
ENSDARG00000015239	prpf19	100	85.347	ENSMODG00000020338	PRPF19	100	85.347	Monodelphis_domestica
ENSDARG00000015239	prpf19	99	84.825	ENSMALG00000010981	prpf19	99	84.825	Monopterus_albus
ENSDARG00000015239	prpf19	100	85.347	MGP_CAROLIEiJ_G0022704	Prpf19	100	85.347	Mus_caroli
ENSDARG00000015239	prpf19	100	85.347	ENSMUSG00000024735	Prpf19	100	85.347	Mus_musculus
ENSDARG00000015239	prpf19	100	85.347	MGP_PahariEiJ_G0014198	Prpf19	100	85.347	Mus_pahari
ENSDARG00000015239	prpf19	100	85.347	MGP_SPRETEiJ_G0023618	Prpf19	100	85.347	Mus_spretus
ENSDARG00000015239	prpf19	100	85.149	ENSMPUG00000014432	PRPF19	100	85.149	Mustela_putorius_furo
ENSDARG00000015239	prpf19	100	82.500	ENSMLUG00000017597	PRPF19	100	82.500	Myotis_lucifugus
ENSDARG00000015239	prpf19	100	85.347	ENSNGAG00000012671	Prpf19	100	85.347	Nannospalax_galili
ENSDARG00000015239	prpf19	100	93.663	ENSNBRG00000000055	prpf19	100	93.663	Neolamprologus_brichardi
ENSDARG00000015239	prpf19	100	85.347	ENSNLEG00000013618	PRPF19	100	85.347	Nomascus_leucogenys
ENSDARG00000015239	prpf19	99	82.329	ENSOPRG00000008630	PRPF19	100	82.329	Ochotona_princeps
ENSDARG00000015239	prpf19	100	85.743	ENSODEG00000004043	PRPF19	100	85.743	Octodon_degus
ENSDARG00000015239	prpf19	100	93.663	ENSONIG00000004880	prpf19	100	93.663	Oreochromis_niloticus
ENSDARG00000015239	prpf19	100	81.939	ENSOCUG00000015689	PRPF19	100	81.939	Oryctolagus_cuniculus
ENSDARG00000015239	prpf19	100	92.277	ENSORLG00000004666	prpf19	100	92.277	Oryzias_latipes
ENSDARG00000015239	prpf19	100	92.277	ENSORLG00020013561	prpf19	100	92.277	Oryzias_latipes_hni
ENSDARG00000015239	prpf19	100	92.277	ENSORLG00015022196	prpf19	100	92.277	Oryzias_latipes_hsok
ENSDARG00000015239	prpf19	100	92.277	ENSOMEG00000004424	prpf19	100	92.277	Oryzias_melastigma
ENSDARG00000015239	prpf19	100	85.149	ENSOGAG00000016756	PRPF19	100	85.149	Otolemur_garnettii
ENSDARG00000015239	prpf19	100	85.347	ENSOARG00000015596	PRPF19	100	85.347	Ovis_aries
ENSDARG00000015239	prpf19	99	83.694	ENSPPAG00000030246	PRPF19	100	82.515	Pan_paniscus
ENSDARG00000015239	prpf19	100	85.149	ENSPPRG00000002470	PRPF19	100	85.149	Panthera_pardus
ENSDARG00000015239	prpf19	99	85.341	ENSPTIG00000006541	PRPF19	99	85.341	Panthera_tigris_altaica
ENSDARG00000015239	prpf19	100	85.347	ENSPTRG00000003724	PRPF19	100	85.347	Pan_troglodytes
ENSDARG00000015239	prpf19	100	85.347	ENSPANG00000002762	PRPF19	100	85.347	Papio_anubis
ENSDARG00000015239	prpf19	100	93.663	ENSPKIG00000019715	prpf19	100	93.663	Paramormyrops_kingsleyae
ENSDARG00000015239	prpf19	83	83.571	ENSPSIG00000007497	PRPF19	100	83.571	Pelodiscus_sinensis
ENSDARG00000015239	prpf19	100	92.475	ENSPMGG00000017527	prpf19	100	92.475	Periophthalmus_magnuspinnatus
ENSDARG00000015239	prpf19	100	84.752	ENSPEMG00000019270	Prpf19	100	84.752	Peromyscus_maniculatus_bairdii
ENSDARG00000015239	prpf19	99	83.966	ENSPCIG00000003485	PRPF19	80	83.966	Phascolarctos_cinereus
ENSDARG00000015239	prpf19	100	91.683	ENSPFOG00000002558	prpf19	100	91.683	Poecilia_formosa
ENSDARG00000015239	prpf19	100	91.683	ENSPLAG00000017942	prpf19	100	91.683	Poecilia_latipinna
ENSDARG00000015239	prpf19	100	91.683	ENSPMEG00000008638	prpf19	100	91.683	Poecilia_mexicana
ENSDARG00000015239	prpf19	100	92.500	ENSPREG00000002489	prpf19	96	92.500	Poecilia_reticulata
ENSDARG00000015239	prpf19	100	84.906	ENSPPYG00000003202	PRPF19	91	84.906	Pongo_abelii
ENSDARG00000015239	prpf19	100	84.752	ENSPCAG00000001930	PRPF19	100	84.752	Procavia_capensis
ENSDARG00000015239	prpf19	100	85.412	ENSPCOG00000014017	PRPF19	100	85.412	Propithecus_coquereli
ENSDARG00000015239	prpf19	100	85.149	ENSPVAG00000014669	PRPF19	100	85.149	Pteropus_vampyrus
ENSDARG00000015239	prpf19	100	93.663	ENSPNYG00000000859	prpf19	100	93.663	Pundamilia_nyererei
ENSDARG00000015239	prpf19	100	95.842	ENSPNAG00000019245	prpf19	100	95.842	Pygocentrus_nattereri
ENSDARG00000015239	prpf19	100	85.347	ENSRNOG00000020897	Prpf19	100	85.347	Rattus_norvegicus
ENSDARG00000015239	prpf19	100	85.347	ENSRBIG00000036672	PRPF19	100	85.347	Rhinopithecus_bieti
ENSDARG00000015239	prpf19	100	85.347	ENSRROG00000041572	PRPF19	100	85.347	Rhinopithecus_roxellana
ENSDARG00000015239	prpf19	100	85.149	ENSSBOG00000022840	PRPF19	100	85.149	Saimiri_boliviensis_boliviensis
ENSDARG00000015239	prpf19	100	85.347	ENSSHAG00000009462	PRPF19	100	85.347	Sarcophilus_harrisii
ENSDARG00000015239	prpf19	100	92.475	ENSSFOG00015001236	prpf19	100	92.277	Scleropages_formosus
ENSDARG00000015239	prpf19	100	93.861	ENSSMAG00000002273	prpf19	100	93.861	Scophthalmus_maximus
ENSDARG00000015239	prpf19	100	94.455	ENSSDUG00000003299	prpf19	100	94.455	Seriola_dumerili
ENSDARG00000015239	prpf19	100	94.455	ENSSLDG00000003019	prpf19	100	94.455	Seriola_lalandi_dorsalis
ENSDARG00000015239	prpf19	100	83.960	ENSSPUG00000019328	PRPF19	100	83.960	Sphenodon_punctatus
ENSDARG00000015239	prpf19	100	94.455	ENSSPAG00000008546	prpf19	100	94.455	Stegastes_partitus
ENSDARG00000015239	prpf19	100	85.149	ENSSSCG00000013107	PRPF19	100	85.149	Sus_scrofa
ENSDARG00000015239	prpf19	100	83.960	ENSTGUG00000006319	PRPF19	100	83.960	Taeniopygia_guttata
ENSDARG00000015239	prpf19	100	92.475	ENSTRUG00000008502	prpf19	100	92.475	Takifugu_rubripes
ENSDARG00000015239	prpf19	100	90.419	ENSTNIG00000014219	prpf19	76	90.691	Tetraodon_nigroviridis
ENSDARG00000015239	prpf19	100	85.149	ENSTTRG00000012476	PRPF19	100	85.149	Tursiops_truncatus
ENSDARG00000015239	prpf19	100	85.149	ENSUAMG00000011280	PRPF19	100	85.149	Ursus_americanus
ENSDARG00000015239	prpf19	84	84.161	ENSUMAG00000011609	PRPF19	83	84.161	Ursus_maritimus
ENSDARG00000015239	prpf19	99	85.495	ENSVPAG00000010516	PRPF19	100	85.495	Vicugna_pacos
ENSDARG00000015239	prpf19	100	85.149	ENSVVUG00000005291	PRPF19	100	85.149	Vulpes_vulpes
ENSDARG00000015239	prpf19	100	80.682	ENSXETG00000011938	prpf19	100	80.682	Xenopus_tropicalis
ENSDARG00000015239	prpf19	100	91.683	ENSXCOG00000003141	prpf19	100	91.683	Xiphophorus_couchianus
ENSDARG00000015239	prpf19	100	91.881	ENSXMAG00000008485	prpf19	100	91.881	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000349	generation of catalytic spliceosome for first transesterification step	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000974	Prp19 complex	21873635.	IBA	Component
GO:0000974	Prp19 complex	-	IEA	Component
GO:0004842	ubiquitin-protein transferase activity	21873635.	IBA	Function
GO:0004842	ubiquitin-protein transferase activity	-	IEA	Function
GO:0006281	DNA repair	-	IEA	Process
GO:0016567	protein ubiquitination	-	IEA	Process
GO:0043518	negative regulation of DNA damage response, signal transduction by p53 class mediator	22952453.	IGI	Process
GO:0043518	negative regulation of DNA damage response, signal transduction by p53 class mediator	22952453.	IMP	Process
GO:0061630	ubiquitin protein ligase activity	-	IEA	Function
GO:0071006	U2-type catalytic step 1 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component