EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000015352 (Gene tree)
Gene ID: 323464
Gene Symbol: lsg1
Alias: fb99b06|wu:fb99b06|zgc:76988
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 12916 bases
Position: chr11:34219991-34232906
Accession: ZDB-GENE-030131-2184
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000134827	MMR_HSR1	PF01926.23	3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000162150	-	2522	-	ENSDARP00000134827	640 (aa)	-	A0A0R4IIR9
ENSDART00000166802	-	739	-	-	- (aa)	-	-
ENSDART00000160307	-	693	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000015352's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000015352's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000015352	lsg1	99	67.678	ENSG00000041802	LSG1	98	77.714	Homo_sapiens
ENSDARG00000015352	lsg1	100	74.574	ENSAPOG00000009694	lsg1	100	74.458	Acanthochromis_polyacanthus
ENSDARG00000015352	lsg1	100	64.902	ENSAMEG00000009343	LSG1	100	64.750	Ailuropoda_melanoleuca
ENSDARG00000015352	lsg1	98	75.399	ENSACIG00000012406	lsg1	100	75.077	Amphilophus_citrinellus
ENSDARG00000015352	lsg1	100	74.074	ENSAOCG00000016066	lsg1	100	74.383	Amphiprion_ocellaris
ENSDARG00000015352	lsg1	100	73.920	ENSAPEG00000003252	lsg1	100	73.773	Amphiprion_percula
ENSDARG00000015352	lsg1	98	75.917	ENSATEG00000011794	lsg1	100	75.194	Anabas_testudineus
ENSDARG00000015352	lsg1	95	61.600	ENSACAG00000004222	LSG1	100	60.960	Anolis_carolinensis
ENSDARG00000015352	lsg1	99	67.933	ENSANAG00000021153	LSG1	99	67.781	Aotus_nancymaae
ENSDARG00000015352	lsg1	100	74.656	ENSACLG00000000520	lsg1	100	74.504	Astatotilapia_calliptera
ENSDARG00000015352	lsg1	100	78.955	ENSAMXG00000008271	lsg1	100	78.923	Astyanax_mexicanus
ENSDARG00000015352	lsg1	99	66.104	ENSBTAG00000008461	LSG1	99	66.514	Bos_taurus
ENSDARG00000015352	lsg1	72	48.198	WBGene00016907	C53H9.2	93	52.027	Caenorhabditis_elegans
ENSDARG00000015352	lsg1	99	67.173	ENSCJAG00000013962	LSG1	99	67.021	Callithrix_jacchus
ENSDARG00000015352	lsg1	95	66.986	ENSCAFG00000013445	LSG1	100	67.091	Canis_familiaris
ENSDARG00000015352	lsg1	100	65.460	ENSCAFG00020002216	LSG1	99	66.880	Canis_lupus_dingo
ENSDARG00000015352	lsg1	100	65.408	ENSCHIG00000015769	LSG1	100	66.309	Capra_hircus
ENSDARG00000015352	lsg1	99	66.009	ENSTSYG00000001447	LSG1	99	66.009	Carlito_syrichta
ENSDARG00000015352	lsg1	95	66.776	ENSCAPG00000009856	LSG1	99	66.776	Cavia_aperea
ENSDARG00000015352	lsg1	99	66.717	ENSCCAG00000035744	LSG1	99	66.565	Cebus_capucinus
ENSDARG00000015352	lsg1	99	67.678	ENSCATG00000042060	LSG1	99	66.161	Cercocebus_atys
ENSDARG00000015352	lsg1	99	67.781	ENSCSAG00000008796	LSG1	92	67.629	Chlorocebus_sabaeus
ENSDARG00000015352	lsg1	100	65.913	ENSCPBG00000015941	LSG1	83	65.913	Chrysemys_picta_bellii
ENSDARG00000015352	lsg1	78	53.600	ENSCING00000007079	-	100	54.464	Ciona_intestinalis
ENSDARG00000015352	lsg1	82	52.920	ENSCSAVG00000002514	-	99	52.920	Ciona_savignyi
ENSDARG00000015352	lsg1	99	67.629	ENSCANG00000030709	LSG1	99	67.477	Colobus_angolensis_palliatus
ENSDARG00000015352	lsg1	99	65.512	ENSCGRG00001019846	Lsg1	99	66.464	Cricetulus_griseus_chok1gshd
ENSDARG00000015352	lsg1	99	65.512	ENSCGRG00000014617	Lsg1	99	66.464	Cricetulus_griseus_crigri
ENSDARG00000015352	lsg1	98	74.724	ENSCSEG00000008522	lsg1	100	74.343	Cynoglossus_semilaevis
ENSDARG00000015352	lsg1	97	74.478	ENSCVAG00000002484	lsg1	100	74.574	Cyprinodon_variegatus
ENSDARG00000015352	lsg1	99	65.449	ENSDNOG00000006224	LSG1	99	64.643	Dasypus_novemcinctus
ENSDARG00000015352	lsg1	99	49.768	FBgn0266284	Ns3	99	50.000	Drosophila_melanogaster
ENSDARG00000015352	lsg1	88	75.000	ENSETEG00000003888	LSG1	89	75.000	Echinops_telfairi
ENSDARG00000015352	lsg1	88	55.932	ENSEBUG00000003119	lsg1	85	55.593	Eptatretus_burgeri
ENSDARG00000015352	lsg1	99	66.161	ENSEASG00005000678	LSG1	99	66.313	Equus_asinus_asinus
ENSDARG00000015352	lsg1	99	66.465	ENSECAG00000017659	LSG1	99	66.616	Equus_caballus
ENSDARG00000015352	lsg1	87	63.248	ENSEEUG00000015217	LSG1	87	63.248	Erinaceus_europaeus
ENSDARG00000015352	lsg1	100	72.334	ENSELUG00000023973	lsg1	100	71.957	Esox_lucius
ENSDARG00000015352	lsg1	100	65.861	ENSFCAG00000024957	LSG1	100	66.063	Felis_catus
ENSDARG00000015352	lsg1	92	62.439	ENSFALG00000007210	LSG1	94	62.439	Ficedula_albicollis
ENSDARG00000015352	lsg1	99	65.480	ENSFDAG00000017373	LSG1	99	65.794	Fukomys_damarensis
ENSDARG00000015352	lsg1	97	73.760	ENSFHEG00000003680	lsg1	100	74.299	Fundulus_heteroclitus
ENSDARG00000015352	lsg1	98	70.300	ENSGMOG00000015834	lsg1	100	70.479	Gadus_morhua
ENSDARG00000015352	lsg1	99	61.261	ENSGALG00000007058	LSG1	87	62.462	Gallus_gallus
ENSDARG00000015352	lsg1	97	73.515	ENSGAFG00000015831	lsg1	100	73.750	Gambusia_affinis
ENSDARG00000015352	lsg1	98	73.618	ENSGACG00000009323	lsg1	100	73.570	Gasterosteus_aculeatus
ENSDARG00000015352	lsg1	99	67.477	ENSGGOG00000000520	LSG1	99	67.325	Gorilla_gorilla
ENSDARG00000015352	lsg1	100	75.734	ENSHBUG00000005659	lsg1	100	75.580	Haplochromis_burtoni
ENSDARG00000015352	lsg1	99	65.736	ENSHGLG00000017390	LSG1	99	64.885	Heterocephalus_glaber_female
ENSDARG00000015352	lsg1	99	65.736	ENSHGLG00100018587	LSG1	99	64.885	Heterocephalus_glaber_male
ENSDARG00000015352	lsg1	97	73.968	ENSHCOG00000016848	lsg1	100	72.561	Hippocampus_comes
ENSDARG00000015352	lsg1	100	79.219	ENSIPUG00000008631	lsg1	100	78.516	Ictalurus_punctatus
ENSDARG00000015352	lsg1	75	60.437	ENSSTOG00000010234	LSG1	92	60.800	Ictidomys_tridecemlineatus
ENSDARG00000015352	lsg1	99	66.096	ENSJJAG00000015513	Lsg1	99	66.252	Jaculus_jaculus
ENSDARG00000015352	lsg1	98	73.365	ENSKMAG00000009681	lsg1	100	71.582	Kryptolebias_marmoratus
ENSDARG00000015352	lsg1	98	75.559	ENSLBEG00000024261	lsg1	100	75.781	Labrus_bergylta
ENSDARG00000015352	lsg1	100	67.964	ENSLACG00000013399	LSG1	100	66.765	Latimeria_chalumnae
ENSDARG00000015352	lsg1	98	72.799	ENSLOCG00000004918	lsg1	100	72.923	Lepisosteus_oculatus
ENSDARG00000015352	lsg1	99	66.052	ENSLAFG00000012919	-	99	66.206	Loxodonta_africana
ENSDARG00000015352	lsg1	99	67.678	ENSMFAG00000039903	LSG1	99	66.161	Macaca_fascicularis
ENSDARG00000015352	lsg1	99	67.678	ENSMMUG00000010708	LSG1	99	67.527	Macaca_mulatta
ENSDARG00000015352	lsg1	99	67.678	ENSMNEG00000031538	LSG1	99	66.313	Macaca_nemestrina
ENSDARG00000015352	lsg1	99	67.678	ENSMLEG00000041184	LSG1	99	67.527	Mandrillus_leucophaeus
ENSDARG00000015352	lsg1	100	73.023	ENSMAMG00000000470	lsg1	100	71.957	Mastacembelus_armatus
ENSDARG00000015352	lsg1	100	75.734	ENSMZEG00005017865	lsg1	100	75.580	Maylandia_zebra
ENSDARG00000015352	lsg1	88	63.452	ENSMGAG00000007050	LSG1	99	64.129	Meleagris_gallopavo
ENSDARG00000015352	lsg1	93	64.677	ENSMAUG00000016976	Lsg1	94	64.842	Mesocricetus_auratus
ENSDARG00000015352	lsg1	99	65.554	ENSMICG00000049087	LSG1	99	65.198	Microcebus_murinus
ENSDARG00000015352	lsg1	99	66.212	ENSMOCG00000022136	Lsg1	99	65.710	Microtus_ochrogaster
ENSDARG00000015352	lsg1	98	70.128	ENSMMOG00000008884	lsg1	100	71.562	Mola_mola
ENSDARG00000015352	lsg1	99	56.528	ENSMODG00000019828	LSG1	99	56.098	Monodelphis_domestica
ENSDARG00000015352	lsg1	100	68.056	MGP_CAROLIEiJ_G0020648	Lsg1	100	67.846	Mus_caroli
ENSDARG00000015352	lsg1	100	67.593	ENSMUSG00000022538	Lsg1	100	67.538	Mus_musculus
ENSDARG00000015352	lsg1	98	67.344	MGP_PahariEiJ_G0016352	Lsg1	100	67.025	Mus_pahari
ENSDARG00000015352	lsg1	100	67.593	MGP_SPRETEiJ_G0021544	Lsg1	100	67.385	Mus_spretus
ENSDARG00000015352	lsg1	100	65.257	ENSMPUG00000003734	LSG1	100	65.060	Mustela_putorius_furo
ENSDARG00000015352	lsg1	100	66.464	ENSMLUG00000012548	LSG1	100	66.263	Myotis_lucifugus
ENSDARG00000015352	lsg1	99	64.840	ENSNGAG00000021872	Lsg1	99	65.449	Nannospalax_galili
ENSDARG00000015352	lsg1	99	67.021	ENSNLEG00000008293	LSG1	99	67.173	Nomascus_leucogenys
ENSDARG00000015352	lsg1	69	72.165	ENSMEUG00000009041	-	83	72.165	Notamacropus_eugenii
ENSDARG00000015352	lsg1	100	75.538	ENSONIG00000002635	lsg1	100	75.692	Oreochromis_niloticus
ENSDARG00000015352	lsg1	95	67.416	ENSOANG00000012742	LSG1	99	66.139	Ornithorhynchus_anatinus
ENSDARG00000015352	lsg1	99	66.768	ENSOCUG00000004817	LSG1	99	66.768	Oryctolagus_cuniculus
ENSDARG00000015352	lsg1	98	71.885	ENSORLG00000007695	lsg1	100	71.163	Oryzias_latipes
ENSDARG00000015352	lsg1	98	72.524	ENSORLG00020016286	lsg1	100	71.719	Oryzias_latipes_hni
ENSDARG00000015352	lsg1	98	71.246	ENSORLG00015012025	lsg1	100	71.094	Oryzias_latipes_hsok
ENSDARG00000015352	lsg1	98	71.292	ENSOMEG00000022379	lsg1	100	70.872	Oryzias_melastigma
ENSDARG00000015352	lsg1	99	64.671	ENSOGAG00000003475	LSG1	99	65.106	Otolemur_garnettii
ENSDARG00000015352	lsg1	100	66.109	ENSOARG00000020403	LSG1	100	66.161	Ovis_aries
ENSDARG00000015352	lsg1	99	67.316	ENSPPAG00000029271	LSG1	99	67.375	Pan_paniscus
ENSDARG00000015352	lsg1	100	64.723	ENSPPRG00000010281	LSG1	100	64.925	Panthera_pardus
ENSDARG00000015352	lsg1	100	65.408	ENSPTIG00000010789	LSG1	100	65.611	Panthera_tigris_altaica
ENSDARG00000015352	lsg1	99	67.166	ENSPTRG00000015760	LSG1	99	67.223	Pan_troglodytes
ENSDARG00000015352	lsg1	99	67.375	ENSPANG00000018249	LSG1	99	65.857	Papio_anubis
ENSDARG00000015352	lsg1	99	74.299	ENSPKIG00000002895	lsg1	99	74.299	Paramormyrops_kingsleyae
ENSDARG00000015352	lsg1	96	62.166	ENSPSIG00000009821	LSG1	99	61.599	Pelodiscus_sinensis
ENSDARG00000015352	lsg1	95	73.529	ENSPMGG00000000931	lsg1	100	73.203	Periophthalmus_magnuspinnatus
ENSDARG00000015352	lsg1	99	66.565	ENSPEMG00000012082	-	99	66.718	Peromyscus_maniculatus_bairdii
ENSDARG00000015352	lsg1	99	62.946	ENSPMAG00000007451	lsg1	99	62.669	Petromyzon_marinus
ENSDARG00000015352	lsg1	100	62.553	ENSPCIG00000013890	LSG1	82	62.376	Phascolarctos_cinereus
ENSDARG00000015352	lsg1	97	74.318	ENSPFOG00000021882	lsg1	100	74.844	Poecilia_formosa
ENSDARG00000015352	lsg1	97	73.515	ENSPLAG00000019536	lsg1	100	74.062	Poecilia_latipinna
ENSDARG00000015352	lsg1	97	73.440	ENSPMEG00000017281	lsg1	100	73.988	Poecilia_mexicana
ENSDARG00000015352	lsg1	97	63.407	ENSPREG00000006048	lsg1	100	63.650	Poecilia_reticulata
ENSDARG00000015352	lsg1	92	66.007	ENSPPYG00000014425	LSG1	100	65.512	Pongo_abelii
ENSDARG00000015352	lsg1	89	75.000	ENSPCAG00000005511	LSG1	90	75.000	Procavia_capensis
ENSDARG00000015352	lsg1	99	65.408	ENSPCOG00000012360	LSG1	99	64.947	Propithecus_coquereli
ENSDARG00000015352	lsg1	100	74.656	ENSPNYG00000021994	lsg1	100	74.504	Pundamilia_nyererei
ENSDARG00000015352	lsg1	100	79.969	ENSPNAG00000015533	lsg1	100	79.199	Pygocentrus_nattereri
ENSDARG00000015352	lsg1	100	66.717	ENSRNOG00000001727	Lsg1	100	65.766	Rattus_norvegicus
ENSDARG00000015352	lsg1	99	67.275	ENSRBIG00000029053	LSG1	99	67.123	Rhinopithecus_bieti
ENSDARG00000015352	lsg1	99	67.275	ENSRROG00000037702	LSG1	99	67.123	Rhinopithecus_roxellana
ENSDARG00000015352	lsg1	77	41.602	YGL099W	LSG1	64	54.706	Saccharomyces_cerevisiae
ENSDARG00000015352	lsg1	99	67.629	ENSSBOG00000034938	LSG1	99	67.477	Saimiri_boliviensis_boliviensis
ENSDARG00000015352	lsg1	77	63.027	ENSSHAG00000003487	LSG1	100	62.476	Sarcophilus_harrisii
ENSDARG00000015352	lsg1	98	73.927	ENSSFOG00015008955	lsg1	100	74.650	Scleropages_formosus
ENSDARG00000015352	lsg1	98	75.633	ENSSDUG00000004622	lsg1	100	75.926	Seriola_dumerili
ENSDARG00000015352	lsg1	98	75.714	ENSSLDG00000010869	lsg1	100	75.659	Seriola_lalandi_dorsalis
ENSDARG00000015352	lsg1	82	67.742	ENSSARG00000012981	LSG1	83	66.857	Sorex_araneus
ENSDARG00000015352	lsg1	100	66.465	ENSSPUG00000016347	LSG1	100	66.717	Sphenodon_punctatus
ENSDARG00000015352	lsg1	100	73.913	ENSSPAG00000005508	lsg1	100	73.292	Stegastes_partitus
ENSDARG00000015352	lsg1	100	65.794	ENSSSCG00000011827	LSG1	100	66.000	Sus_scrofa
ENSDARG00000015352	lsg1	88	61.642	ENSTGUG00000009068	LSG1	100	61.642	Taeniopygia_guttata
ENSDARG00000015352	lsg1	97	68.938	ENSTRUG00000017380	lsg1	100	67.674	Takifugu_rubripes
ENSDARG00000015352	lsg1	97	75.559	ENSTNIG00000015570	lsg1	100	75.231	Tetraodon_nigroviridis
ENSDARG00000015352	lsg1	100	61.912	ENSTTRG00000000559	LSG1	100	61.702	Tursiops_truncatus
ENSDARG00000015352	lsg1	100	65.606	ENSUAMG00000012454	LSG1	100	65.606	Ursus_americanus
ENSDARG00000015352	lsg1	100	65.606	ENSUMAG00000000855	LSG1	100	65.606	Ursus_maritimus
ENSDARG00000015352	lsg1	95	62.639	ENSVPAG00000012400	LSG1	100	62.321	Vicugna_pacos
ENSDARG00000015352	lsg1	95	66.134	ENSVVUG00000008956	LSG1	99	64.643	Vulpes_vulpes
ENSDARG00000015352	lsg1	100	67.474	ENSXETG00000003451	lsg1	100	67.020	Xenopus_tropicalis
ENSDARG00000015352	lsg1	97	73.515	ENSXCOG00000003239	lsg1	100	73.750	Xiphophorus_couchianus
ENSDARG00000015352	lsg1	97	72.057	ENSXMAG00000005536	lsg1	100	72.477	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005525	GTP binding	-	ISS	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005783	endoplasmic reticulum	-	ISS	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0015030	Cajal body	-	ISS	Component
GO:0015031	protein transport	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0051168	nuclear export	-	ISS	Process