EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000015471 (Gene tree)
Gene ID: 393283
Gene Symbol: chd1l
Alias: zgc:56084
Full Name: chromodomain helicase DNA binding protein 1-like
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 33461 bases
Position: chr6:36844127-36877587
Accession: ZDB-GENE-040426-892
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000022305	ResIII	PF04851.15	4.6e-10	1	1
ENSDARP00000022305	DEAD	PF00270.29	1.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000020505	-	4437	-	ENSDARP00000022305	1026 (aa)	-	F1R485

Gene Model

Click here to download ENSDARG00000015471's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000015471's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000015471	chd1l	53	45.055	ENSDARG00000052348	smarca5	52	44.872
ENSDARG00000015471	chd1l	53	44.872	ENSDARG00000012776	smarca1	52	44.973

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000015471	chd1l	84	66.317	ENSG00000131778	CHD1L	97	67.000	Homo_sapiens
ENSDARG00000015471	chd1l	97	71.169	ENSAPOG00000001539	chd1l	99	74.338	Acanthochromis_polyacanthus
ENSDARG00000015471	chd1l	85	66.170	ENSAMEG00000017063	CHD1L	97	66.170	Ailuropoda_melanoleuca
ENSDARG00000015471	chd1l	83	74.912	ENSACIG00000001164	chd1l	99	74.057	Amphilophus_citrinellus
ENSDARG00000015471	chd1l	99	70.225	ENSAOCG00000014510	chd1l	99	69.638	Amphiprion_ocellaris
ENSDARG00000015471	chd1l	84	72.517	ENSAPEG00000017573	chd1l	95	72.517	Amphiprion_percula
ENSDARG00000015471	chd1l	88	69.714	ENSAPEG00000017450	chd1l	95	72.717	Amphiprion_percula
ENSDARG00000015471	chd1l	99	69.536	ENSATEG00000013058	chd1l	99	69.052	Anabas_testudineus
ENSDARG00000015471	chd1l	82	64.852	ENSAPLG00000009976	CHD1L	94	65.207	Anas_platyrhynchos
ENSDARG00000015471	chd1l	85	60.112	ENSACAG00000017686	CHD1L	98	60.000	Anolis_carolinensis
ENSDARG00000015471	chd1l	83	66.315	ENSANAG00000024347	CHD1L	95	65.848	Aotus_nancymaae
ENSDARG00000015471	chd1l	94	70.954	ENSACLG00000019304	chd1l	96	73.654	Astatotilapia_calliptera
ENSDARG00000015471	chd1l	99	65.916	ENSAMXG00000012367	chd1l	99	65.463	Astyanax_mexicanus
ENSDARG00000015471	chd1l	85	65.332	ENSBTAG00000020831	CHD1L	96	65.557	Bos_taurus
ENSDARG00000015471	chd1l	85	65.323	ENSCJAG00000002406	CHD1L	96	65.092	Callithrix_jacchus
ENSDARG00000015471	chd1l	87	62.374	ENSCAFG00000010944	CHD1L	97	63.303	Canis_familiaris
ENSDARG00000015471	chd1l	87	63.951	ENSCAFG00020020121	CHD1L	97	64.800	Canis_lupus_dingo
ENSDARG00000015471	chd1l	86	64.560	ENSCHIG00000013871	CHD1L	97	65.212	Capra_hircus
ENSDARG00000015471	chd1l	82	66.071	ENSTSYG00000003005	CHD1L	98	66.069	Carlito_syrichta
ENSDARG00000015471	chd1l	84	63.353	ENSCPOG00000009000	CHD1L	96	63.415	Cavia_porcellus
ENSDARG00000015471	chd1l	85	63.134	ENSCCAG00000036079	CHD1L	96	62.903	Cebus_capucinus
ENSDARG00000015471	chd1l	85	65.553	ENSCATG00000031044	CHD1L	96	65.438	Cercocebus_atys
ENSDARG00000015471	chd1l	85	65.098	ENSCLAG00000000880	CHD1L	97	65.438	Chinchilla_lanigera
ENSDARG00000015471	chd1l	85	65.783	ENSCSAG00000018386	CHD1L	96	65.668	Chlorocebus_sabaeus
ENSDARG00000015471	chd1l	85	64.384	ENSCPBG00000002600	CHD1L	98	64.605	Chrysemys_picta_bellii
ENSDARG00000015471	chd1l	84	65.041	ENSCANG00000020239	CHD1L	95	65.035	Colobus_angolensis_palliatus
ENSDARG00000015471	chd1l	83	66.667	ENSCGRG00001021624	Chd1l	96	66.550	Cricetulus_griseus_chok1gshd
ENSDARG00000015471	chd1l	81	67.347	ENSCGRG00000007554	Chd1l	98	67.227	Cricetulus_griseus_crigri
ENSDARG00000015471	chd1l	94	68.744	ENSCVAG00000002595	chd1l	97	67.318	Cyprinodon_variegatus
ENSDARG00000015471	chd1l	86	64.983	ENSDNOG00000019504	CHD1L	95	66.550	Dasypus_novemcinctus
ENSDARG00000015471	chd1l	84	64.679	ENSDORG00000013555	Chd1l	95	65.574	Dipodomys_ordii
ENSDARG00000015471	chd1l	78	61.160	ENSETEG00000008445	CHD1L	87	62.500	Echinops_telfairi
ENSDARG00000015471	chd1l	65	53.137	ENSEBUG00000005791	chd1l	83	54.757	Eptatretus_burgeri
ENSDARG00000015471	chd1l	87	64.646	ENSEASG00005007364	CHD1L	98	67.160	Equus_asinus_asinus
ENSDARG00000015471	chd1l	87	64.534	ENSECAG00000008915	CHD1L	98	67.037	Equus_caballus
ENSDARG00000015471	chd1l	99	60.443	ENSELUG00000016844	chd1l	99	59.923	Esox_lucius
ENSDARG00000015471	chd1l	83	66.472	ENSFCAG00000007777	CHD1L	97	65.750	Felis_catus
ENSDARG00000015471	chd1l	87	62.192	ENSFALG00000006087	CHD1L	96	63.043	Ficedula_albicollis
ENSDARG00000015471	chd1l	82	66.429	ENSFDAG00000012431	CHD1L	98	66.390	Fukomys_damarensis
ENSDARG00000015471	chd1l	99	70.177	ENSFHEG00000012420	chd1l	100	69.171	Fundulus_heteroclitus
ENSDARG00000015471	chd1l	85	63.140	ENSGALG00000015038	CHD1L	97	63.116	Gallus_gallus
ENSDARG00000015471	chd1l	99	68.324	ENSGAFG00000018198	chd1l	99	68.858	Gambusia_affinis
ENSDARG00000015471	chd1l	50	74.175	ENSGACG00000014042	chd1l	98	74.175	Gasterosteus_aculeatus
ENSDARG00000015471	chd1l	85	64.531	ENSGAGG00000014432	CHD1L	99	64.531	Gopherus_agassizii
ENSDARG00000015471	chd1l	84	65.425	ENSGGOG00000001067	CHD1L	95	65.304	Gorilla_gorilla
ENSDARG00000015471	chd1l	94	70.954	ENSHBUG00000007464	chd1l	98	73.570	Haplochromis_burtoni
ENSDARG00000015471	chd1l	84	64.494	ENSHGLG00000008933	CHD1L	96	64.494	Heterocephalus_glaber_female
ENSDARG00000015471	chd1l	81	63.528	ENSHGLG00100007155	CHD1L	98	63.409	Heterocephalus_glaber_male
ENSDARG00000015471	chd1l	83	70.671	ENSHCOG00000012787	chd1l	93	70.200	Hippocampus_comes
ENSDARG00000015471	chd1l	99	72.293	ENSIPUG00000022617	chd1l	99	71.902	Ictalurus_punctatus
ENSDARG00000015471	chd1l	87	59.551	ENSSTOG00000007032	CHD1L	96	60.581	Ictidomys_tridecemlineatus
ENSDARG00000015471	chd1l	99	68.744	ENSKMAG00000014358	chd1l	99	68.354	Kryptolebias_marmoratus
ENSDARG00000015471	chd1l	99	69.515	ENSLBEG00000023845	chd1l	96	74.182	Labrus_bergylta
ENSDARG00000015471	chd1l	100	57.582	ENSLACG00000006262	CHD1L	99	57.143	Latimeria_chalumnae
ENSDARG00000015471	chd1l	99	68.895	ENSLOCG00000010574	chd1l	100	69.066	Lepisosteus_oculatus
ENSDARG00000015471	chd1l	83	64.377	ENSLAFG00000018136	CHD1L	98	64.929	Loxodonta_africana
ENSDARG00000015471	chd1l	82	65.912	ENSMFAG00000043562	CHD1L	98	66.790	Macaca_fascicularis
ENSDARG00000015471	chd1l	85	65.668	ENSMMUG00000009024	CHD1L	96	65.553	Macaca_mulatta
ENSDARG00000015471	chd1l	85	65.668	ENSMNEG00000039905	CHD1L	96	65.553	Macaca_nemestrina
ENSDARG00000015471	chd1l	85	65.668	ENSMLEG00000030900	CHD1L	96	65.553	Mandrillus_leucophaeus
ENSDARG00000015471	chd1l	99	69.268	ENSMAMG00000012822	chd1l	99	71.445	Mastacembelus_armatus
ENSDARG00000015471	chd1l	94	71.162	ENSMZEG00005020830	chd1l	95	70.072	Maylandia_zebra
ENSDARG00000015471	chd1l	84	62.602	ENSMGAG00000014304	CHD1L	98	63.432	Meleagris_gallopavo
ENSDARG00000015471	chd1l	85	66.055	ENSMICG00000002497	CHD1L	96	65.826	Microcebus_murinus
ENSDARG00000015471	chd1l	86	65.135	ENSMOCG00000006305	Chd1l	97	65.311	Microtus_ochrogaster
ENSDARG00000015471	chd1l	89	65.632	ENSMMOG00000005964	chd1l	91	68.914	Mola_mola
ENSDARG00000015471	chd1l	86	65.174	ENSMODG00000018717	CHD1L	97	65.232	Monodelphis_domestica
ENSDARG00000015471	chd1l	100	68.472	ENSMALG00000014675	chd1l	100	68.605	Monopterus_albus
ENSDARG00000015471	chd1l	87	64.548	MGP_CAROLIEiJ_G0025401	Chd1l	98	65.672	Mus_caroli
ENSDARG00000015471	chd1l	85	64.699	ENSMUSG00000028089	Chd1l	98	65.034	Mus_musculus
ENSDARG00000015471	chd1l	85	66.171	MGP_PahariEiJ_G0026845	Chd1l	96	66.783	Mus_pahari
ENSDARG00000015471	chd1l	85	65.336	MGP_SPRETEiJ_G0026347	Chd1l	98	65.557	Mus_spretus
ENSDARG00000015471	chd1l	87	65.590	ENSMPUG00000000615	CHD1L	97	66.628	Mustela_putorius_furo
ENSDARG00000015471	chd1l	83	64.925	ENSMLUG00000007573	CHD1L	94	65.000	Myotis_lucifugus
ENSDARG00000015471	chd1l	84	61.724	ENSNGAG00000000908	Chd1l	97	62.573	Nannospalax_galili
ENSDARG00000015471	chd1l	84	71.739	ENSNBRG00000006021	chd1l	95	71.968	Neolamprologus_brichardi
ENSDARG00000015471	chd1l	83	65.537	ENSNLEG00000000179	CHD1L	95	65.421	Nomascus_leucogenys
ENSDARG00000015471	chd1l	83	55.257	ENSOPRG00000006973	CHD1L	92	65.098	Ochotona_princeps
ENSDARG00000015471	chd1l	85	61.023	ENSODEG00000002494	CHD1L	97	61.257	Octodon_degus
ENSDARG00000015471	chd1l	99	69.700	ENSONIG00000003183	chd1l	99	69.201	Oreochromis_niloticus
ENSDARG00000015471	chd1l	75	63.239	ENSOANG00000003068	CHD1L	93	63.111	Ornithorhynchus_anatinus
ENSDARG00000015471	chd1l	84	62.271	ENSOCUG00000009336	CHD1L	95	62.140	Oryctolagus_cuniculus
ENSDARG00000015471	chd1l	89	67.064	ENSORLG00000003673	chd1l	95	70.358	Oryzias_latipes
ENSDARG00000015471	chd1l	94	67.702	ENSORLG00020005123	chd1l	99	67.983	Oryzias_latipes_hni
ENSDARG00000015471	chd1l	94	67.425	ENSORLG00015001680	chd1l	98	70.886	Oryzias_latipes_hsok
ENSDARG00000015471	chd1l	81	65.793	ENSOMEG00000006109	chd1l	96	65.447	Oryzias_melastigma
ENSDARG00000015471	chd1l	86	64.825	ENSOGAG00000008775	CHD1L	96	65.252	Otolemur_garnettii
ENSDARG00000015471	chd1l	86	64.374	ENSOARG00000020547	CHD1L	98	66.154	Ovis_aries
ENSDARG00000015471	chd1l	83	65.529	ENSPPAG00000039193	CHD1L	98	66.873	Pan_paniscus
ENSDARG00000015471	chd1l	83	67.016	ENSPPRG00000010258	CHD1L	97	66.247	Panthera_pardus
ENSDARG00000015471	chd1l	84	66.317	ENSPTRG00000001220	CHD1L	95	66.199	Pan_troglodytes
ENSDARG00000015471	chd1l	83	66.432	ENSPANG00000009170	CHD1L	95	65.967	Papio_anubis
ENSDARG00000015471	chd1l	99	68.226	ENSPKIG00000022166	chd1l	97	71.325	Paramormyrops_kingsleyae
ENSDARG00000015471	chd1l	87	63.586	ENSPSIG00000012595	CHD1L	96	64.123	Pelodiscus_sinensis
ENSDARG00000015471	chd1l	85	63.823	ENSPEMG00000013528	Chd1l	97	64.041	Peromyscus_maniculatus_bairdii
ENSDARG00000015471	chd1l	81	65.700	ENSPCIG00000030409	CHD1L	98	66.543	Phascolarctos_cinereus
ENSDARG00000015471	chd1l	99	67.602	ENSPFOG00000015948	chd1l	99	66.506	Poecilia_formosa
ENSDARG00000015471	chd1l	99	67.761	ENSPLAG00000015145	chd1l	97	71.363	Poecilia_latipinna
ENSDARG00000015471	chd1l	94	68.280	ENSPMEG00000008720	chd1l	99	67.318	Poecilia_mexicana
ENSDARG00000015471	chd1l	86	70.112	ENSPREG00000017885	chd1l	98	70.953	Poecilia_reticulata
ENSDARG00000015471	chd1l	85	65.672	ENSPPYG00000000946	CHD1L	96	65.553	Pongo_abelii
ENSDARG00000015471	chd1l	79	60.099	ENSPCAG00000005959	CHD1L	91	60.172	Procavia_capensis
ENSDARG00000015471	chd1l	83	62.073	ENSPVAG00000006084	CHD1L	99	62.530	Pteropus_vampyrus
ENSDARG00000015471	chd1l	84	73.943	ENSPNYG00000013001	chd1l	97	73.684	Pundamilia_nyererei
ENSDARG00000015471	chd1l	99	76.774	ENSPNAG00000011881	chd1l	99	76.871	Pygocentrus_nattereri
ENSDARG00000015471	chd1l	86	65.095	ENSRNOG00000017669	Chd1l	97	65.753	Rattus_norvegicus
ENSDARG00000015471	chd1l	84	65.041	ENSRBIG00000041272	CHD1L	95	65.035	Rhinopithecus_bieti
ENSDARG00000015471	chd1l	83	65.105	ENSRROG00000041354	CHD1L	96	64.836	Rhinopithecus_roxellana
ENSDARG00000015471	chd1l	86	63.708	ENSSHAG00000017395	CHD1L	97	64.834	Sarcophilus_harrisii
ENSDARG00000015471	chd1l	94	70.239	ENSSFOG00015003649	chd1l	98	72.203	Scleropages_formosus
ENSDARG00000015471	chd1l	99	67.050	ENSSMAG00000019377	chd1l	96	70.447	Scophthalmus_maximus
ENSDARG00000015471	chd1l	84	72.101	ENSSDUG00000019831	chd1l	95	73.554	Seriola_dumerili
ENSDARG00000015471	chd1l	84	73.341	ENSSLDG00000012714	chd1l	95	74.706	Seriola_lalandi_dorsalis
ENSDARG00000015471	chd1l	87	62.864	ENSSPUG00000016865	CHD1L	98	63.574	Sphenodon_punctatus
ENSDARG00000015471	chd1l	94	70.807	ENSSPAG00000017653	chd1l	99	70.248	Stegastes_partitus
ENSDARG00000015471	chd1l	85	63.657	ENSSSCG00000006701	CHD1L	98	63.876	Sus_scrofa
ENSDARG00000015471	chd1l	85	63.647	ENSTGUG00000013392	-	98	64.637	Taeniopygia_guttata
ENSDARG00000015471	chd1l	83	64.052	ENSTNIG00000004902	chd1l	99	63.700	Tetraodon_nigroviridis
ENSDARG00000015471	chd1l	84	62.659	ENSTTRG00000011711	CHD1L	98	64.005	Tursiops_truncatus
ENSDARG00000015471	chd1l	85	65.940	ENSUAMG00000021991	CHD1L	97	66.055	Ursus_americanus
ENSDARG00000015471	chd1l	85	65.826	ENSUMAG00000009733	CHD1L	97	65.826	Ursus_maritimus
ENSDARG00000015471	chd1l	87	64.502	ENSVVUG00000007316	CHD1L	92	65.482	Vulpes_vulpes
ENSDARG00000015471	chd1l	97	66.271	ENSXCOG00000008336	chd1l	98	65.415	Xiphophorus_couchianus
ENSDARG00000015471	chd1l	99	68.719	ENSXMAG00000015898	chd1l	99	68.133	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000166	nucleotide binding	-	ISS	Function
GO:0004003	ATP-dependent DNA helicase activity	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006338	chromatin remodeling	-	IEA	Process
GO:0006338	chromatin remodeling	-	ISS	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISS	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016887	ATPase activity	-	ISS	Function