EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000015676 (Gene tree)
Gene ID: 541444
Gene Symbol: nmd3
Alias: nmd3l|zgc:113103
Full Name: NMD3 ribosome export adaptor
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 18683 bases
Position: chr15:1653779-1672461
Accession: ZDB-GENE-050320-149
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000012858	NMD3	PF04981.13	4.9e-81	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000149368	-	788	-	-	- (aa)	-	-
ENSDART00000021299	-	1926	-	ENSDARP00000012858	505 (aa)	-	Q5BLF0

Gene Model

Click here to download ENSDARG00000015676's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG
dre03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000015676's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000015676	nmd3	99	77.030	ENSG00000169251	NMD3	100	79.358	Homo_sapiens
ENSDARG00000015676	nmd3	100	87.129	ENSAPOG00000022912	nmd3	100	87.129	Acanthochromis_polyacanthus
ENSDARG00000015676	nmd3	99	76.087	ENSAMEG00000001584	NMD3	99	76.087	Ailuropoda_melanoleuca
ENSDARG00000015676	nmd3	100	81.980	ENSACIG00000015196	nmd3	100	81.980	Amphilophus_citrinellus
ENSDARG00000015676	nmd3	100	87.525	ENSAOCG00000009086	nmd3	100	87.525	Amphiprion_ocellaris
ENSDARG00000015676	nmd3	100	87.723	ENSAPEG00000000329	nmd3	100	87.723	Amphiprion_percula
ENSDARG00000015676	nmd3	100	87.525	ENSATEG00000014351	nmd3	100	87.525	Anabas_testudineus
ENSDARG00000015676	nmd3	100	75.296	ENSAPLG00000014786	NMD3	100	75.296	Anas_platyrhynchos
ENSDARG00000015676	nmd3	100	78.063	ENSACAG00000007349	NMD3	100	78.063	Anolis_carolinensis
ENSDARG00000015676	nmd3	99	77.200	ENSANAG00000026434	NMD3	99	77.200	Aotus_nancymaae
ENSDARG00000015676	nmd3	100	87.327	ENSACLG00000015520	nmd3	100	87.327	Astatotilapia_calliptera
ENSDARG00000015676	nmd3	100	87.129	ENSAMXG00000014415	nmd3	100	87.129	Astyanax_mexicanus
ENSDARG00000015676	nmd3	99	76.040	ENSBTAG00000016228	NMD3	100	76.040	Bos_taurus
ENSDARG00000015676	nmd3	96	49.798	WBGene00012030	T25G3.3	96	49.798	Caenorhabditis_elegans
ENSDARG00000015676	nmd3	99	77.956	ENSCJAG00000002900	NMD3	97	77.956	Callithrix_jacchus
ENSDARG00000015676	nmd3	99	76.353	ENSCAFG00000014352	NMD3	97	76.353	Canis_familiaris
ENSDARG00000015676	nmd3	99	76.238	ENSCAFG00020021145	NMD3	99	76.238	Canis_lupus_dingo
ENSDARG00000015676	nmd3	99	75.842	ENSCHIG00000016015	NMD3	100	75.842	Capra_hircus
ENSDARG00000015676	nmd3	99	76.832	ENSTSYG00000002155	NMD3	99	76.832	Carlito_syrichta
ENSDARG00000015676	nmd3	79	76.750	ENSCAPG00000017861	NMD3	93	76.750	Cavia_aperea
ENSDARG00000015676	nmd3	87	76.888	ENSCPOG00000005953	NMD3	94	76.888	Cavia_porcellus
ENSDARG00000015676	nmd3	99	77.228	ENSCCAG00000037460	NMD3	100	77.228	Cebus_capucinus
ENSDARG00000015676	nmd3	99	77.228	ENSCATG00000030022	NMD3	100	77.228	Cercocebus_atys
ENSDARG00000015676	nmd3	99	77.426	ENSCLAG00000003155	NMD3	100	77.426	Chinchilla_lanigera
ENSDARG00000015676	nmd3	99	77.228	ENSCSAG00000012333	NMD3	100	77.228	Chlorocebus_sabaeus
ENSDARG00000015676	nmd3	80	74.737	ENSCHOG00000001240	NMD3	80	74.737	Choloepus_hoffmanni
ENSDARG00000015676	nmd3	99	79.208	ENSCPBG00000018318	NMD3	99	79.579	Chrysemys_picta_bellii
ENSDARG00000015676	nmd3	97	54.032	ENSCING00000002129	-	98	54.032	Ciona_intestinalis
ENSDARG00000015676	nmd3	87	53.968	ENSCSAVG00000001120	-	97	53.968	Ciona_savignyi
ENSDARG00000015676	nmd3	99	71.627	ENSCANG00000042939	NMD3	95	71.230	Colobus_angolensis_palliatus
ENSDARG00000015676	nmd3	91	67.316	ENSCGRG00001001792	Nmd3	97	67.316	Cricetulus_griseus_chok1gshd
ENSDARG00000015676	nmd3	97	76.626	ENSCGRG00000007947	Nmd3	98	76.626	Cricetulus_griseus_crigri
ENSDARG00000015676	nmd3	100	86.535	ENSCSEG00000017954	nmd3	100	86.535	Cynoglossus_semilaevis
ENSDARG00000015676	nmd3	100	79.406	ENSCVAG00000004672	nmd3	100	78.218	Cyprinodon_variegatus
ENSDARG00000015676	nmd3	99	75.446	ENSDNOG00000045222	NMD3	100	75.446	Dasypus_novemcinctus
ENSDARG00000015676	nmd3	97	69.184	ENSDORG00000005716	Nmd3	100	67.105	Dipodomys_ordii
ENSDARG00000015676	nmd3	97	54.980	FBgn0023542	Nmd3	95	54.382	Drosophila_melanogaster
ENSDARG00000015676	nmd3	99	66.733	ENSETEG00000003168	NMD3	99	66.733	Echinops_telfairi
ENSDARG00000015676	nmd3	88	59.551	ENSEBUG00000014316	nmd3	96	59.551	Eptatretus_burgeri
ENSDARG00000015676	nmd3	99	76.436	ENSEASG00005018672	NMD3	100	76.436	Equus_asinus_asinus
ENSDARG00000015676	nmd3	99	76.754	ENSECAG00000000188	NMD3	97	76.754	Equus_caballus
ENSDARG00000015676	nmd3	94	55.180	ENSEEUG00000010642	-	100	55.180	Erinaceus_europaeus
ENSDARG00000015676	nmd3	100	85.941	ENSELUG00000024123	nmd3	100	85.941	Esox_lucius
ENSDARG00000015676	nmd3	99	76.553	ENSFCAG00000022867	NMD3	99	76.436	Felis_catus
ENSDARG00000015676	nmd3	94	79.832	ENSFALG00000008711	NMD3	100	79.832	Ficedula_albicollis
ENSDARG00000015676	nmd3	99	76.877	ENSFDAG00000013724	-	100	76.877	Fukomys_damarensis
ENSDARG00000015676	nmd3	97	64.777	ENSFDAG00000012197	-	98	64.959	Fukomys_damarensis
ENSDARG00000015676	nmd3	100	84.752	ENSFHEG00000000415	nmd3	100	84.752	Fundulus_heteroclitus
ENSDARG00000015676	nmd3	97	84.286	ENSGMOG00000009675	nmd3	100	84.286	Gadus_morhua
ENSDARG00000015676	nmd3	100	76.877	ENSGALG00000009533	NMD3	100	76.877	Gallus_gallus
ENSDARG00000015676	nmd3	99	85.542	ENSGAFG00000012798	nmd3	94	85.542	Gambusia_affinis
ENSDARG00000015676	nmd3	100	84.158	ENSGACG00000010028	nmd3	100	84.158	Gasterosteus_aculeatus
ENSDARG00000015676	nmd3	99	79.010	ENSGAGG00000006556	NMD3	99	79.010	Gopherus_agassizii
ENSDARG00000015676	nmd3	99	61.905	ENSGGOG00000028590	-	99	61.905	Gorilla_gorilla
ENSDARG00000015676	nmd3	99	77.426	ENSGGOG00000007157	NMD3	100	77.426	Gorilla_gorilla
ENSDARG00000015676	nmd3	100	87.327	ENSHBUG00000001781	nmd3	100	87.327	Haplochromis_burtoni
ENSDARG00000015676	nmd3	99	62.574	ENSHGLG00000010477	-	100	62.574	Heterocephalus_glaber_female
ENSDARG00000015676	nmd3	99	76.832	ENSHGLG00000014451	-	100	76.832	Heterocephalus_glaber_female
ENSDARG00000015676	nmd3	99	76.832	ENSHGLG00100006613	-	100	76.832	Heterocephalus_glaber_male
ENSDARG00000015676	nmd3	99	62.376	ENSHGLG00100001042	-	100	61.782	Heterocephalus_glaber_male
ENSDARG00000015676	nmd3	99	84.891	ENSHCOG00000004292	nmd3	92	84.891	Hippocampus_comes
ENSDARG00000015676	nmd3	100	84.356	ENSIPUG00000005073	nmd3	100	84.356	Ictalurus_punctatus
ENSDARG00000015676	nmd3	99	77.426	ENSSTOG00000001899	NMD3	100	77.426	Ictidomys_tridecemlineatus
ENSDARG00000015676	nmd3	97	77.959	ENSJJAG00000019759	Nmd3	99	77.959	Jaculus_jaculus
ENSDARG00000015676	nmd3	100	86.733	ENSKMAG00000020427	nmd3	100	86.733	Kryptolebias_marmoratus
ENSDARG00000015676	nmd3	100	83.826	ENSLBEG00000022216	nmd3	100	83.826	Labrus_bergylta
ENSDARG00000015676	nmd3	99	76.200	ENSLACG00000005731	NMD3	99	79.405	Latimeria_chalumnae
ENSDARG00000015676	nmd3	100	84.980	ENSLOCG00000003561	nmd3	100	84.980	Lepisosteus_oculatus
ENSDARG00000015676	nmd3	99	75.296	ENSLAFG00000007231	NMD3	100	75.296	Loxodonta_africana
ENSDARG00000015676	nmd3	99	77.030	ENSMFAG00000040934	NMD3	100	77.030	Macaca_fascicularis
ENSDARG00000015676	nmd3	99	76.190	ENSMMUG00000009564	NMD3	99	76.038	Macaca_mulatta
ENSDARG00000015676	nmd3	99	77.030	ENSMNEG00000034626	NMD3	100	77.030	Macaca_nemestrina
ENSDARG00000015676	nmd3	88	77.978	ENSMLEG00000002741	NMD3	100	77.978	Mandrillus_leucophaeus
ENSDARG00000015676	nmd3	100	86.931	ENSMAMG00000012427	nmd3	100	86.931	Mastacembelus_armatus
ENSDARG00000015676	nmd3	100	87.327	ENSMZEG00005016888	nmd3	100	87.327	Maylandia_zebra
ENSDARG00000015676	nmd3	100	76.680	ENSMGAG00000010498	NMD3	100	76.680	Meleagris_gallopavo
ENSDARG00000015676	nmd3	99	75.842	ENSMAUG00000000633	Nmd3	100	75.842	Mesocricetus_auratus
ENSDARG00000015676	nmd3	99	76.436	ENSMICG00000049196	NMD3	100	76.436	Microcebus_murinus
ENSDARG00000015676	nmd3	99	75.198	ENSMOCG00000005180	Nmd3	100	75.198	Microtus_ochrogaster
ENSDARG00000015676	nmd3	100	85.573	ENSMMOG00000012765	nmd3	100	85.573	Mola_mola
ENSDARG00000015676	nmd3	99	61.996	ENSMODG00000016296	NMD3	100	63.654	Monodelphis_domestica
ENSDARG00000015676	nmd3	100	87.921	ENSMALG00000009256	nmd3	100	87.921	Monopterus_albus
ENSDARG00000015676	nmd3	99	75.644	MGP_CAROLIEiJ_G0025069	Nmd3	100	75.644	Mus_caroli
ENSDARG00000015676	nmd3	99	75.446	ENSMUSG00000027787	Nmd3	100	75.446	Mus_musculus
ENSDARG00000015676	nmd3	99	75.446	MGP_PahariEiJ_G0026512	Nmd3	100	75.446	Mus_pahari
ENSDARG00000015676	nmd3	99	75.644	MGP_SPRETEiJ_G0026011	Nmd3	100	75.644	Mus_spretus
ENSDARG00000015676	nmd3	99	76.436	ENSMPUG00000002955	NMD3	99	76.436	Mustela_putorius_furo
ENSDARG00000015676	nmd3	97	73.225	ENSMLUG00000000701	NMD3	97	73.225	Myotis_lucifugus
ENSDARG00000015676	nmd3	99	76.190	ENSNGAG00000012307	Nmd3	99	76.190	Nannospalax_galili
ENSDARG00000015676	nmd3	100	87.327	ENSNBRG00000003324	nmd3	100	87.327	Neolamprologus_brichardi
ENSDARG00000015676	nmd3	99	77.426	ENSNLEG00000004655	NMD3	100	77.426	Nomascus_leucogenys
ENSDARG00000015676	nmd3	73	70.175	ENSOPRG00000007690	-	73	70.175	Ochotona_princeps
ENSDARG00000015676	nmd3	99	77.030	ENSODEG00000006270	NMD3	100	77.030	Octodon_degus
ENSDARG00000015676	nmd3	100	87.921	ENSONIG00000003643	nmd3	100	87.921	Oreochromis_niloticus
ENSDARG00000015676	nmd3	99	76.494	ENSOCUG00000017454	NMD3	100	76.494	Oryctolagus_cuniculus
ENSDARG00000015676	nmd3	100	86.931	ENSORLG00000006279	nmd3	100	86.931	Oryzias_latipes
ENSDARG00000015676	nmd3	100	86.733	ENSORLG00020003843	nmd3	100	86.733	Oryzias_latipes_hni
ENSDARG00000015676	nmd3	100	86.337	ENSORLG00015006379	nmd3	100	86.337	Oryzias_latipes_hsok
ENSDARG00000015676	nmd3	100	87.723	ENSOMEG00000012144	nmd3	100	87.723	Oryzias_melastigma
ENSDARG00000015676	nmd3	99	76.832	ENSOGAG00000014910	NMD3	100	76.832	Otolemur_garnettii
ENSDARG00000015676	nmd3	99	76.248	ENSOARG00000001883	NMD3	97	76.248	Ovis_aries
ENSDARG00000015676	nmd3	99	77.228	ENSPPAG00000043829	NMD3	100	77.228	Pan_paniscus
ENSDARG00000015676	nmd3	99	76.400	ENSPPRG00000000724	NMD3	97	76.400	Panthera_pardus
ENSDARG00000015676	nmd3	99	75.842	ENSPTIG00000016761	NMD3	99	75.842	Panthera_tigris_altaica
ENSDARG00000015676	nmd3	99	77.030	ENSPTRG00000015586	NMD3	100	77.030	Pan_troglodytes
ENSDARG00000015676	nmd3	99	76.389	ENSPANG00000006665	NMD3	95	76.389	Papio_anubis
ENSDARG00000015676	nmd3	100	85.347	ENSPKIG00000009928	nmd3	100	85.347	Paramormyrops_kingsleyae
ENSDARG00000015676	nmd3	100	79.051	ENSPSIG00000007591	NMD3	100	79.051	Pelodiscus_sinensis
ENSDARG00000015676	nmd3	100	81.980	ENSPMGG00000014015	nmd3	100	81.980	Periophthalmus_magnuspinnatus
ENSDARG00000015676	nmd3	99	76.040	ENSPEMG00000021880	Nmd3	100	76.040	Peromyscus_maniculatus_bairdii
ENSDARG00000015676	nmd3	99	78.416	ENSPCIG00000020869	NMD3	100	78.416	Phascolarctos_cinereus
ENSDARG00000015676	nmd3	100	86.535	ENSPFOG00000012103	nmd3	100	86.535	Poecilia_formosa
ENSDARG00000015676	nmd3	100	86.733	ENSPLAG00000008087	nmd3	100	86.733	Poecilia_latipinna
ENSDARG00000015676	nmd3	100	86.535	ENSPMEG00000008506	nmd3	100	86.535	Poecilia_mexicana
ENSDARG00000015676	nmd3	100	86.733	ENSPREG00000001848	nmd3	100	86.733	Poecilia_reticulata
ENSDARG00000015676	nmd3	99	77.228	ENSPPYG00000014263	NMD3	100	77.228	Pongo_abelii
ENSDARG00000015676	nmd3	91	62.609	ENSPCAG00000009851	NMD3	100	62.609	Procavia_capensis
ENSDARG00000015676	nmd3	85	74.790	ENSPVAG00000003301	NMD3	85	74.790	Pteropus_vampyrus
ENSDARG00000015676	nmd3	100	87.129	ENSPNYG00000006778	nmd3	100	87.129	Pundamilia_nyererei
ENSDARG00000015676	nmd3	100	87.129	ENSPNAG00000009442	nmd3	100	87.129	Pygocentrus_nattereri
ENSDARG00000015676	nmd3	99	75.446	ENSRNOG00000009310	Nmd3	100	75.446	Rattus_norvegicus
ENSDARG00000015676	nmd3	99	73.267	ENSRBIG00000040379	NMD3	100	73.267	Rhinopithecus_bieti
ENSDARG00000015676	nmd3	99	77.030	ENSRROG00000036181	NMD3	100	77.030	Rhinopithecus_roxellana
ENSDARG00000015676	nmd3	97	43.444	YHR170W	NMD3	97	43.444	Saccharomyces_cerevisiae
ENSDARG00000015676	nmd3	97	78.163	ENSSBOG00000024021	NMD3	97	78.163	Saimiri_boliviensis_boliviensis
ENSDARG00000015676	nmd3	99	73.465	ENSSHAG00000016044	NMD3	100	73.465	Sarcophilus_harrisii
ENSDARG00000015676	nmd3	100	87.525	ENSSFOG00015003609	nmd3	100	87.525	Scleropages_formosus
ENSDARG00000015676	nmd3	100	85.149	ENSSMAG00000012887	nmd3	100	85.149	Scophthalmus_maximus
ENSDARG00000015676	nmd3	100	88.317	ENSSDUG00000023721	nmd3	100	88.317	Seriola_dumerili
ENSDARG00000015676	nmd3	100	87.723	ENSSLDG00000006565	nmd3	100	87.723	Seriola_lalandi_dorsalis
ENSDARG00000015676	nmd3	97	76.531	ENSSARG00000010402	NMD3	99	76.531	Sorex_araneus
ENSDARG00000015676	nmd3	99	78.044	ENSSPUG00000018791	NMD3	100	78.044	Sphenodon_punctatus
ENSDARG00000015676	nmd3	100	86.733	ENSSPAG00000014328	nmd3	100	86.733	Stegastes_partitus
ENSDARG00000015676	nmd3	99	75.752	ENSSSCG00000022952	NMD3	100	75.644	Sus_scrofa
ENSDARG00000015676	nmd3	91	76.840	ENSTGUG00000015141	-	100	76.840	Taeniopygia_guttata
ENSDARG00000015676	nmd3	99	78.812	ENSTGUG00000011140	-	100	78.812	Taeniopygia_guttata
ENSDARG00000015676	nmd3	100	85.941	ENSTRUG00000005958	nmd3	100	85.941	Takifugu_rubripes
ENSDARG00000015676	nmd3	99	55.842	ENSTBEG00000011783	-	100	55.842	Tupaia_belangeri
ENSDARG00000015676	nmd3	99	71.485	ENSTTRG00000012938	NMD3	100	71.485	Tursiops_truncatus
ENSDARG00000015676	nmd3	80	76.866	ENSUAMG00000009305	-	99	76.866	Ursus_americanus
ENSDARG00000015676	nmd3	99	76.000	ENSUMAG00000011070	NMD3	99	75.952	Ursus_maritimus
ENSDARG00000015676	nmd3	99	75.248	ENSVPAG00000008779	NMD3	100	75.248	Vicugna_pacos
ENSDARG00000015676	nmd3	99	76.353	ENSVVUG00000023055	NMD3	99	76.353	Vulpes_vulpes
ENSDARG00000015676	nmd3	100	79.051	ENSXETG00000027727	nmd3	100	79.051	Xenopus_tropicalis
ENSDARG00000015676	nmd3	71	75.877	ENSXCOG00000012490	nmd3	81	89.873	Xiphophorus_couchianus
ENSDARG00000015676	nmd3	100	86.535	ENSXMAG00000018406	nmd3	100	86.535	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000055	ribosomal large subunit export from nucleus	21873635.	IBA	Process
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0015031	protein transport	-	IEA	Process
GO:0043023	ribosomal large subunit binding	21873635.	IBA	Function
GO:0043023	ribosomal large subunit binding	-	IEA	Function