EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000016080 (Gene tree)
Gene ID: 557254
Gene Symbol: nob1
Alias: fc27e05|si:ch73-167i17.3|wu:fc27e05
Full Name: NIN1 (RPN12) binding protein 1 homolog
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 13679 bases
Position: chr18:5861755-5875433
Accession: ZDB-GENE-030131-3112
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000125998	NOB1_Zn_bind	PF08772.11	2.7e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000151727	-	1577	XM_009293382	ENSDARP00000125998	440 (aa)	XP_009291657	I3ISV3

Gene Model

Click here to download ENSDARG00000016080's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000016080's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000016080	nob1	99	59.909	ENSG00000141101	NOB1	94	66.129	Homo_sapiens
ENSDARG00000016080	nob1	85	63.298	ENSAPOG00000008241	nob1	93	61.968	Acanthochromis_polyacanthus
ENSDARG00000016080	nob1	99	60.230	ENSAMEG00000006706	NOB1	98	60.230	Ailuropoda_melanoleuca
ENSDARG00000016080	nob1	99	65.148	ENSACIG00000001503	nob1	100	65.148	Amphilophus_citrinellus
ENSDARG00000016080	nob1	100	63.636	ENSAOCG00000006533	nob1	99	63.182	Amphiprion_ocellaris
ENSDARG00000016080	nob1	100	64.318	ENSAPEG00000000029	nob1	99	63.409	Amphiprion_percula
ENSDARG00000016080	nob1	100	64.318	ENSAPEG00000000032	-	99	63.409	Amphiprion_percula
ENSDARG00000016080	nob1	100	63.409	ENSATEG00000014585	nob1	99	62.500	Anabas_testudineus
ENSDARG00000016080	nob1	99	58.409	ENSACAG00000003697	NOB1	87	57.955	Anolis_carolinensis
ENSDARG00000016080	nob1	99	60.092	ENSANAG00000036611	NOB1	99	60.092	Aotus_nancymaae
ENSDARG00000016080	nob1	100	64.159	ENSACLG00000024897	nob1	99	64.640	Astatotilapia_calliptera
ENSDARG00000016080	nob1	95	71.163	ENSAMXG00000003642	nob1	99	72.196	Astyanax_mexicanus
ENSDARG00000016080	nob1	99	60.183	ENSBTAG00000020633	NOB1	99	59.633	Bos_taurus
ENSDARG00000016080	nob1	68	41.951	WBGene00021843	Y54E10BR.4	78	41.500	Caenorhabditis_elegans
ENSDARG00000016080	nob1	99	59.310	ENSCJAG00000015230	NOB1	99	59.310	Callithrix_jacchus
ENSDARG00000016080	nob1	99	58.945	ENSCAFG00000020251	NOB1	99	59.633	Canis_familiaris
ENSDARG00000016080	nob1	99	58.945	ENSCAFG00020020297	NOB1	99	59.633	Canis_lupus_dingo
ENSDARG00000016080	nob1	99	60.227	ENSCHIG00000027022	NOB1	99	59.909	Capra_hircus
ENSDARG00000016080	nob1	99	60.000	ENSTSYG00000003084	NOB1	99	61.136	Carlito_syrichta
ENSDARG00000016080	nob1	85	58.981	ENSCAPG00000015542	NOB1	99	58.177	Cavia_aperea
ENSDARG00000016080	nob1	99	57.798	ENSCPOG00000022538	NOB1	99	59.174	Cavia_porcellus
ENSDARG00000016080	nob1	99	60.780	ENSCCAG00000023773	NOB1	99	60.321	Cebus_capucinus
ENSDARG00000016080	nob1	99	59.361	ENSCATG00000039487	NOB1	99	59.589	Cercocebus_atys
ENSDARG00000016080	nob1	85	56.300	ENSCLAG00000005926	NOB1	99	56.300	Chinchilla_lanigera
ENSDARG00000016080	nob1	99	59.310	ENSCSAG00000004158	NOB1	99	59.540	Chlorocebus_sabaeus
ENSDARG00000016080	nob1	99	55.149	ENSCHOG00000011047	NOB1	99	54.128	Choloepus_hoffmanni
ENSDARG00000016080	nob1	99	59.817	ENSCPBG00000027035	NOB1	92	59.589	Chrysemys_picta_bellii
ENSDARG00000016080	nob1	99	44.545	ENSCING00000023441	-	99	43.864	Ciona_intestinalis
ENSDARG00000016080	nob1	99	43.213	ENSCSAVG00000009081	-	99	42.534	Ciona_savignyi
ENSDARG00000016080	nob1	99	59.862	ENSCGRG00001009255	Nob1	94	60.092	Cricetulus_griseus_chok1gshd
ENSDARG00000016080	nob1	99	59.862	ENSCGRG00000010869	Nob1	99	60.092	Cricetulus_griseus_crigri
ENSDARG00000016080	nob1	88	64.767	ENSCSEG00000019657	nob1	92	63.265	Cynoglossus_semilaevis
ENSDARG00000016080	nob1	99	60.690	ENSDNOG00000041643	NOB1	99	60.460	Dasypus_novemcinctus
ENSDARG00000016080	nob1	99	58.087	ENSDORG00000000483	Nob1	99	58.998	Dipodomys_ordii
ENSDARG00000016080	nob1	97	39.309	FBgn0030177	CG2972	98	36.345	Drosophila_melanogaster
ENSDARG00000016080	nob1	62	49.818	ENSETEG00000000011	-	59	50.000	Echinops_telfairi
ENSDARG00000016080	nob1	98	43.274	ENSEBUG00000004464	nob1	98	44.595	Eptatretus_burgeri
ENSDARG00000016080	nob1	99	60.412	ENSEASG00005021356	NOB1	83	60.321	Equus_asinus_asinus
ENSDARG00000016080	nob1	99	60.412	ENSECAG00000023748	NOB1	80	60.321	Equus_caballus
ENSDARG00000016080	nob1	70	46.602	ENSEEUG00000014384	NOB1	66	45.955	Erinaceus_europaeus
ENSDARG00000016080	nob1	99	68.080	ENSELUG00000016199	nob1	99	65.179	Esox_lucius
ENSDARG00000016080	nob1	99	61.468	ENSFCAG00000002958	NOB1	99	60.183	Felis_catus
ENSDARG00000016080	nob1	99	58.028	ENSFDAG00000009239	NOB1	99	58.257	Fukomys_damarensis
ENSDARG00000016080	nob1	63	61.290	ENSFHEG00000007657	nob1	67	61.511	Fundulus_heteroclitus
ENSDARG00000016080	nob1	99	62.785	ENSGMOG00000010638	nob1	99	65.068	Gadus_morhua
ENSDARG00000016080	nob1	99	53.273	ENSGALG00000000693	NOB1	99	52.796	Gallus_gallus
ENSDARG00000016080	nob1	100	58.388	ENSGAFG00000006104	nob1	99	55.809	Gambusia_affinis
ENSDARG00000016080	nob1	99	64.840	ENSGACG00000017552	nob1	99	64.840	Gasterosteus_aculeatus
ENSDARG00000016080	nob1	99	60.544	ENSGAGG00000003902	NOB1	99	59.637	Gopherus_agassizii
ENSDARG00000016080	nob1	99	60.364	ENSGGOG00000025456	NOB1	99	59.361	Gorilla_gorilla
ENSDARG00000016080	nob1	100	65.909	ENSHBUG00000002580	nob1	99	63.636	Haplochromis_burtoni
ENSDARG00000016080	nob1	99	59.497	ENSHGLG00000014260	NOB1	99	59.954	Heterocephalus_glaber_female
ENSDARG00000016080	nob1	99	59.954	ENSHGLG00100013978	NOB1	99	59.954	Heterocephalus_glaber_male
ENSDARG00000016080	nob1	99	57.366	ENSHCOG00000006699	nob1	100	56.920	Hippocampus_comes
ENSDARG00000016080	nob1	100	63.445	ENSIPUG00000007579	nob1	99	61.429	Ictalurus_punctatus
ENSDARG00000016080	nob1	99	58.851	ENSSTOG00000001204	NOB1	99	59.310	Ictidomys_tridecemlineatus
ENSDARG00000016080	nob1	99	58.391	ENSJJAG00000015543	Nob1	99	57.701	Jaculus_jaculus
ENSDARG00000016080	nob1	100	62.500	ENSKMAG00000018220	nob1	99	63.409	Kryptolebias_marmoratus
ENSDARG00000016080	nob1	100	65.682	ENSLBEG00000026375	nob1	99	66.364	Labrus_bergylta
ENSDARG00000016080	nob1	100	64.126	ENSLACG00000006973	NOB1	99	63.956	Latimeria_chalumnae
ENSDARG00000016080	nob1	100	64.381	ENSLOCG00000001411	nob1	99	64.381	Lepisosteus_oculatus
ENSDARG00000016080	nob1	99	60.682	ENSLAFG00000008978	NOB1	99	59.681	Loxodonta_africana
ENSDARG00000016080	nob1	99	59.817	ENSMFAG00000030131	NOB1	99	60.046	Macaca_fascicularis
ENSDARG00000016080	nob1	99	59.361	ENSMMUG00000006506	NOB1	99	60.274	Macaca_mulatta
ENSDARG00000016080	nob1	99	59.540	ENSMNEG00000028829	NOB1	99	54.483	Macaca_nemestrina
ENSDARG00000016080	nob1	99	59.817	ENSMLEG00000032913	NOB1	99	60.046	Mandrillus_leucophaeus
ENSDARG00000016080	nob1	100	65.909	ENSMZEG00005028346	nob1	99	64.318	Maylandia_zebra
ENSDARG00000016080	nob1	69	57.729	ENSMZEG00005003827	-	88	60.586	Maylandia_zebra
ENSDARG00000016080	nob1	65	58.885	ENSMGAG00000008675	NOB1	99	57.840	Meleagris_gallopavo
ENSDARG00000016080	nob1	99	58.257	ENSMAUG00000013554	Nob1	99	58.257	Mesocricetus_auratus
ENSDARG00000016080	nob1	99	61.327	ENSMICG00000012123	NOB1	99	60.321	Microcebus_murinus
ENSDARG00000016080	nob1	99	59.080	ENSMOCG00000010370	Nob1	99	60.460	Microtus_ochrogaster
ENSDARG00000016080	nob1	99	64.920	ENSMMOG00000002120	nob1	99	64.237	Mola_mola
ENSDARG00000016080	nob1	99	59.101	ENSMODG00000002677	NOB1	99	58.202	Monodelphis_domestica
ENSDARG00000016080	nob1	100	63.034	ENSMALG00000014580	nob1	100	63.409	Monopterus_albus
ENSDARG00000016080	nob1	99	61.149	MGP_CAROLIEiJ_G0031536	Nob1	97	60.230	Mus_caroli
ENSDARG00000016080	nob1	99	59.770	ENSMUSG00000003848	Nob1	99	59.310	Mus_musculus
ENSDARG00000016080	nob1	99	61.149	MGP_PahariEiJ_G0023136	Nob1	99	60.460	Mus_pahari
ENSDARG00000016080	nob1	99	61.149	MGP_SPRETEiJ_G0032654	Nob1	97	60.460	Mus_spretus
ENSDARG00000016080	nob1	99	59.361	ENSMPUG00000007483	NOB1	91	58.597	Mustela_putorius_furo
ENSDARG00000016080	nob1	99	60.092	ENSMLUG00000006667	NOB1	99	59.174	Myotis_lucifugus
ENSDARG00000016080	nob1	99	59.540	ENSNGAG00000008627	Nob1	99	59.080	Nannospalax_galili
ENSDARG00000016080	nob1	99	60.321	ENSNLEG00000005572	NOB1	99	59.310	Nomascus_leucogenys
ENSDARG00000016080	nob1	79	58.908	ENSOPRG00000006721	NOB1	99	58.046	Ochotona_princeps
ENSDARG00000016080	nob1	99	57.110	ENSODEG00000014376	NOB1	99	58.028	Octodon_degus
ENSDARG00000016080	nob1	99	64.758	ENSONIG00000003319	nob1	100	66.742	Oreochromis_niloticus
ENSDARG00000016080	nob1	85	61.497	ENSOCUG00000004400	NOB1	99	60.963	Oryctolagus_cuniculus
ENSDARG00000016080	nob1	100	63.596	ENSORLG00000018862	nob1	99	62.921	Oryzias_latipes
ENSDARG00000016080	nob1	100	63.864	ENSORLG00020014687	nob1	99	63.864	Oryzias_latipes_hni
ENSDARG00000016080	nob1	100	62.921	ENSORLG00015012156	nob1	99	62.022	Oryzias_latipes_hsok
ENSDARG00000016080	nob1	100	59.081	ENSOMEG00000022722	nob1	99	61.422	Oryzias_melastigma
ENSDARG00000016080	nob1	99	56.064	ENSOGAG00000004590	NOB1	99	55.149	Otolemur_garnettii
ENSDARG00000016080	nob1	99	60.092	ENSOARG00000003606	NOB1	99	60.000	Ovis_aries
ENSDARG00000016080	nob1	99	59.681	ENSPPAG00000040257	NOB1	99	58.676	Pan_paniscus
ENSDARG00000016080	nob1	97	54.524	ENSPPAG00000003317	-	99	54.292	Pan_paniscus
ENSDARG00000016080	nob1	99	59.862	ENSPPRG00000016949	NOB1	99	60.092	Panthera_pardus
ENSDARG00000016080	nob1	99	59.862	ENSPTIG00000011234	NOB1	99	60.321	Panthera_tigris_altaica
ENSDARG00000016080	nob1	99	59.909	ENSPTRG00000008285	NOB1	99	58.904	Pan_troglodytes
ENSDARG00000016080	nob1	99	61.187	ENSPANG00000015858	NOB1	99	60.046	Papio_anubis
ENSDARG00000016080	nob1	99	68.027	ENSPKIG00000020293	nob1	99	67.120	Paramormyrops_kingsleyae
ENSDARG00000016080	nob1	99	57.812	ENSPSIG00000012477	NOB1	98	60.372	Pelodiscus_sinensis
ENSDARG00000016080	nob1	99	61.276	ENSPEMG00000010995	Nob1	99	60.364	Peromyscus_maniculatus_bairdii
ENSDARG00000016080	nob1	85	57.662	ENSPFOG00000000027	nob1	99	56.848	Poecilia_formosa
ENSDARG00000016080	nob1	66	57.823	ENSPLAG00000011546	nob1	95	56.122	Poecilia_latipinna
ENSDARG00000016080	nob1	100	59.227	ENSPMEG00000023435	nob1	99	57.336	Poecilia_mexicana
ENSDARG00000016080	nob1	100	58.155	ENSPREG00000007675	nob1	100	54.339	Poecilia_reticulata
ENSDARG00000016080	nob1	99	60.046	ENSPPYG00000007509	NOB1	99	59.589	Pongo_abelii
ENSDARG00000016080	nob1	99	57.859	ENSPCAG00000001527	NOB1	99	58.087	Procavia_capensis
ENSDARG00000016080	nob1	99	61.009	ENSPCOG00000025515	NOB1	99	60.321	Propithecus_coquereli
ENSDARG00000016080	nob1	79	39.143	ENSPVAG00000013330	NOB1	78	37.714	Pteropus_vampyrus
ENSDARG00000016080	nob1	100	63.656	ENSPNYG00000018449	nob1	99	66.817	Pundamilia_nyererei
ENSDARG00000016080	nob1	100	71.396	ENSPNAG00000004244	nob1	99	71.591	Pygocentrus_nattereri
ENSDARG00000016080	nob1	99	61.927	ENSRNOG00000021890	Nob1	99	61.468	Rattus_norvegicus
ENSDARG00000016080	nob1	99	59.361	ENSRBIG00000019599	NOB1	99	59.589	Rhinopithecus_bieti
ENSDARG00000016080	nob1	99	59.361	ENSRROG00000033419	NOB1	99	59.589	Rhinopithecus_roxellana
ENSDARG00000016080	nob1	90	57.576	ENSSBOG00000029042	NOB1	93	57.576	Saimiri_boliviensis_boliviensis
ENSDARG00000016080	nob1	99	61.327	ENSSHAG00000015387	NOB1	99	59.091	Sarcophilus_harrisii
ENSDARG00000016080	nob1	100	71.236	ENSSFOG00015008503	nob1	99	70.246	Scleropages_formosus
ENSDARG00000016080	nob1	100	64.062	ENSSMAG00000003064	nob1	99	63.801	Scophthalmus_maximus
ENSDARG00000016080	nob1	100	64.560	ENSSDUG00000007307	nob1	99	63.205	Seriola_dumerili
ENSDARG00000016080	nob1	72	74.561	ENSSLDG00000011459	-	99	74.561	Seriola_lalandi_dorsalis
ENSDARG00000016080	nob1	88	56.709	ENSSPUG00000005621	NOB1	99	58.511	Sphenodon_punctatus
ENSDARG00000016080	nob1	100	65.000	ENSSPAG00000022362	nob1	99	64.318	Stegastes_partitus
ENSDARG00000016080	nob1	99	60.137	ENSSSCG00000002753	NOB1	99	58.998	Sus_scrofa
ENSDARG00000016080	nob1	100	61.422	ENSTRUG00000004780	nob1	100	62.069	Takifugu_rubripes
ENSDARG00000016080	nob1	100	61.422	ENSTRUG00000023145	nob1	100	62.069	Takifugu_rubripes
ENSDARG00000016080	nob1	100	64.091	ENSTNIG00000002552	nob1	100	63.801	Tetraodon_nigroviridis
ENSDARG00000016080	nob1	73	46.789	ENSTBEG00000000690	NOB1	61	46.319	Tupaia_belangeri
ENSDARG00000016080	nob1	63	57.246	ENSUAMG00000028135	NOB1	99	59.058	Ursus_americanus
ENSDARG00000016080	nob1	99	58.447	ENSUMAG00000018658	NOB1	94	59.589	Ursus_maritimus
ENSDARG00000016080	nob1	99	58.621	ENSVVUG00000017271	NOB1	99	59.310	Vulpes_vulpes
ENSDARG00000016080	nob1	100	60.045	ENSXETG00000017874	nob1	98	56.863	Xenopus_tropicalis
ENSDARG00000016080	nob1	85	58.556	ENSXCOG00000009734	nob1	99	57.487	Xiphophorus_couchianus
ENSDARG00000016080	nob1	100	58.145	ENSXMAG00000017371	nob1	99	57.692	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000469	cleavage involved in rRNA processing	-	IEA	Process
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0004521	endoribonuclease activity	-	IEA	Function
GO:0030490	maturation of SSU-rRNA	21873635.	IBA	Process
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component
GO:0042274	ribosomal small subunit biogenesis	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function