EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000016117 (Gene tree)
Gene ID: 334455
Gene Symbol: exd2
Alias: fi72h12|wu:fi72h12|zgc:175195
Full Name: exonuclease 3'-5' domain containing 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 22008 bases
Position: chr17:51796668-51818675
Accession: ZDB-GENE-030131-6387
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000129567	DNA_pol_A_exo1	PF01612.20	7e-17	1	1
ENSDARP00000098875	DNA_pol_A_exo1	PF01612.20	7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000157244	-	912	-	ENSDARP00000129567	262 (aa)	-	X1WH57
ENSDART00000111389	-	2995	XM_005169892	ENSDARP00000098875	617 (aa)	XP_005169949	F1QBW6

Gene Model

Click here to download ENSDARG00000016117's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000016117's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000016117	exd2	100	55.276	ENSG00000081177	EXD2	100	61.323	Homo_sapiens
ENSDARG00000016117	exd2	100	66.154	ENSAPOG00000004053	exd2	100	66.154	Acanthochromis_polyacanthus
ENSDARG00000016117	exd2	99	54.823	ENSAMEG00000014467	EXD2	99	55.040	Ailuropoda_melanoleuca
ENSDARG00000016117	exd2	100	65.190	ENSACIG00000012036	exd2	100	65.190	Amphilophus_citrinellus
ENSDARG00000016117	exd2	100	66.151	ENSAOCG00000008005	exd2	100	66.151	Amphiprion_ocellaris
ENSDARG00000016117	exd2	100	66.202	ENSAPEG00000006784	exd2	100	66.202	Amphiprion_percula
ENSDARG00000016117	exd2	100	67.963	ENSATEG00000019834	exd2	100	67.963	Anabas_testudineus
ENSDARG00000016117	exd2	85	63.128	ENSAPLG00000003322	EXD2	99	63.128	Anas_platyrhynchos
ENSDARG00000016117	exd2	99	57.210	ENSACAG00000005306	EXD2	99	57.210	Anolis_carolinensis
ENSDARG00000016117	exd2	100	54.041	ENSANAG00000024026	EXD2	100	54.041	Aotus_nancymaae
ENSDARG00000016117	exd2	100	62.422	ENSACLG00000000445	exd2	100	62.539	Astatotilapia_calliptera
ENSDARG00000016117	exd2	100	67.643	ENSAMXG00000043700	exd2	100	68.576	Astyanax_mexicanus
ENSDARG00000016117	exd2	99	54.459	ENSBTAG00000010052	EXD2	99	54.747	Bos_taurus
ENSDARG00000016117	exd2	100	54.517	ENSCJAG00000014987	EXD2	100	54.517	Callithrix_jacchus
ENSDARG00000016117	exd2	99	55.360	ENSCAFG00000016557	EXD2	99	55.360	Canis_familiaris
ENSDARG00000016117	exd2	99	55.360	ENSCAFG00020005886	EXD2	99	55.360	Canis_lupus_dingo
ENSDARG00000016117	exd2	99	55.343	ENSCHIG00000021919	EXD2	99	55.343	Capra_hircus
ENSDARG00000016117	exd2	100	54.286	ENSTSYG00000002206	EXD2	100	54.286	Carlito_syrichta
ENSDARG00000016117	exd2	100	54.127	ENSCAPG00000011298	EXD2	100	53.968	Cavia_aperea
ENSDARG00000016117	exd2	100	54.127	ENSCPOG00000010018	EXD2	100	53.968	Cavia_porcellus
ENSDARG00000016117	exd2	100	53.724	ENSCCAG00000032107	EXD2	100	53.724	Cebus_capucinus
ENSDARG00000016117	exd2	100	54.444	ENSCATG00000030404	EXD2	100	54.444	Cercocebus_atys
ENSDARG00000016117	exd2	98	55.250	ENSCLAG00000005648	EXD2	99	55.250	Chinchilla_lanigera
ENSDARG00000016117	exd2	100	52.713	ENSCSAG00000013084	EXD2	100	52.941	Chlorocebus_sabaeus
ENSDARG00000016117	exd2	100	57.300	ENSCPBG00000021585	EXD2	100	57.771	Chrysemys_picta_bellii
ENSDARG00000016117	exd2	86	42.351	ENSCING00000016481	-	88	42.351	Ciona_intestinalis
ENSDARG00000016117	exd2	100	54.358	ENSCANG00000036359	EXD2	100	54.358	Colobus_angolensis_palliatus
ENSDARG00000016117	exd2	100	50.832	ENSCGRG00001022081	Exd2	100	50.983	Cricetulus_griseus_chok1gshd
ENSDARG00000016117	exd2	88	57.374	ENSCGRG00000010700	Exd2	85	57.374	Cricetulus_griseus_crigri
ENSDARG00000016117	exd2	95	66.556	ENSCSEG00000009761	exd2	81	66.556	Cynoglossus_semilaevis
ENSDARG00000016117	exd2	100	65.581	ENSCVAG00000016150	exd2	95	65.581	Cyprinodon_variegatus
ENSDARG00000016117	exd2	99	53.100	ENSDNOG00000046970	EXD2	99	53.100	Dasypus_novemcinctus
ENSDARG00000016117	exd2	100	54.446	ENSDORG00000015087	Exd2	100	55.243	Dipodomys_ordii
ENSDARG00000016117	exd2	85	40.304	FBgn0037901	CG6744	86	40.304	Drosophila_melanogaster
ENSDARG00000016117	exd2	79	58.317	ENSETEG00000013803	EXD2	100	58.317	Echinops_telfairi
ENSDARG00000016117	exd2	93	38.235	ENSEBUG00000013264	exd2	98	41.319	Eptatretus_burgeri
ENSDARG00000016117	exd2	99	54.792	ENSEASG00005016586	EXD2	99	54.952	Equus_asinus_asinus
ENSDARG00000016117	exd2	97	54.443	ENSECAG00000019103	EXD2	84	54.766	Equus_caballus
ENSDARG00000016117	exd2	79	62.124	ENSEEUG00000007011	EXD2	100	62.124	Erinaceus_europaeus
ENSDARG00000016117	exd2	99	68.621	ENSELUG00000022318	exd2	99	69.157	Esox_lucius
ENSDARG00000016117	exd2	100	53.846	ENSFCAG00000014350	EXD2	100	53.846	Felis_catus
ENSDARG00000016117	exd2	100	58.294	ENSFALG00000005050	EXD2	100	58.294	Ficedula_albicollis
ENSDARG00000016117	exd2	100	54.286	ENSFDAG00000009719	EXD2	100	54.286	Fukomys_damarensis
ENSDARG00000016117	exd2	100	64.861	ENSFHEG00000010499	exd2	100	64.861	Fundulus_heteroclitus
ENSDARG00000016117	exd2	72	58.667	ENSGMOG00000005937	exd2	99	59.333	Gadus_morhua
ENSDARG00000016117	exd2	87	62.432	ENSGALG00000009456	EXD2	100	57.614	Gallus_gallus
ENSDARG00000016117	exd2	100	64.660	ENSGAFG00000017943	exd2	100	65.278	Gambusia_affinis
ENSDARG00000016117	exd2	81	73.870	ENSGACG00000005358	exd2	99	73.870	Gasterosteus_aculeatus
ENSDARG00000016117	exd2	100	56.782	ENSGAGG00000023895	EXD2	100	56.786	Gopherus_agassizii
ENSDARG00000016117	exd2	100	54.517	ENSGGOG00000001258	EXD2	100	54.517	Gorilla_gorilla
ENSDARG00000016117	exd2	100	62.112	ENSHBUG00000019366	exd2	100	62.384	Haplochromis_burtoni
ENSDARG00000016117	exd2	100	52.590	ENSHGLG00000008157	EXD2	100	52.590	Heterocephalus_glaber_female
ENSDARG00000016117	exd2	100	52.516	ENSHGLG00100003936	EXD2	100	52.598	Heterocephalus_glaber_male
ENSDARG00000016117	exd2	100	63.183	ENSHCOG00000018905	exd2	100	63.183	Hippocampus_comes
ENSDARG00000016117	exd2	100	70.394	ENSIPUG00000000560	exd2	100	70.394	Ictalurus_punctatus
ENSDARG00000016117	exd2	100	53.834	ENSSTOG00000000175	EXD2	100	54.121	Ictidomys_tridecemlineatus
ENSDARG00000016117	exd2	99	43.019	ENSJJAG00000021417	-	100	48.299	Jaculus_jaculus
ENSDARG00000016117	exd2	100	65.639	ENSKMAG00000016785	exd2	100	65.639	Kryptolebias_marmoratus
ENSDARG00000016117	exd2	100	65.941	ENSLBEG00000028400	exd2	100	66.252	Labrus_bergylta
ENSDARG00000016117	exd2	100	53.956	ENSLACG00000018609	EXD2	100	53.956	Latimeria_chalumnae
ENSDARG00000016117	exd2	100	64.537	ENSLOCG00000013376	exd2	100	64.537	Lepisosteus_oculatus
ENSDARG00000016117	exd2	100	55.047	ENSLAFG00000018508	EXD2	100	61.014	Loxodonta_africana
ENSDARG00000016117	exd2	100	54.646	ENSMFAG00000041413	EXD2	100	54.646	Macaca_fascicularis
ENSDARG00000016117	exd2	100	54.675	ENSMMUG00000020514	EXD2	100	54.675	Macaca_mulatta
ENSDARG00000016117	exd2	100	54.747	ENSMNEG00000038561	EXD2	100	54.747	Macaca_nemestrina
ENSDARG00000016117	exd2	100	54.444	ENSMLEG00000044130	EXD2	100	54.444	Mandrillus_leucophaeus
ENSDARG00000016117	exd2	100	66.512	ENSMAMG00000000136	exd2	100	66.512	Mastacembelus_armatus
ENSDARG00000016117	exd2	100	62.733	ENSMZEG00005011274	exd2	100	62.848	Maylandia_zebra
ENSDARG00000016117	exd2	97	58.401	ENSMGAG00000011874	EXD2	100	57.662	Meleagris_gallopavo
ENSDARG00000016117	exd2	100	47.826	ENSMICG00000009606	EXD2	100	47.678	Microcebus_murinus
ENSDARG00000016117	exd2	100	51.703	ENSMOCG00000019497	Exd2	100	51.380	Microtus_ochrogaster
ENSDARG00000016117	exd2	100	68.051	ENSMMOG00000000384	exd2	100	68.051	Mola_mola
ENSDARG00000016117	exd2	97	53.236	ENSMODG00000010228	EXD2	99	53.301	Monodelphis_domestica
ENSDARG00000016117	exd2	100	65.224	ENSMALG00000022371	exd2	100	65.485	Monopterus_albus
ENSDARG00000016117	exd2	100	51.064	ENSMUSG00000032705	Exd2	100	51.976	Mus_musculus
ENSDARG00000016117	exd2	100	52.248	MGP_PahariEiJ_G0029652	Exd2	100	52.713	Mus_pahari
ENSDARG00000016117	exd2	100	51.455	MGP_SPRETEiJ_G0018741	Exd2	100	52.141	Mus_spretus
ENSDARG00000016117	exd2	99	53.797	ENSMPUG00000007368	EXD2	99	53.797	Mustela_putorius_furo
ENSDARG00000016117	exd2	81	60.234	ENSMLUG00000011848	EXD2	100	60.234	Myotis_lucifugus
ENSDARG00000016117	exd2	100	64.320	ENSNBRG00000004615	exd2	100	64.593	Neolamprologus_brichardi
ENSDARG00000016117	exd2	100	54.675	ENSNLEG00000001275	EXD2	100	54.675	Nomascus_leucogenys
ENSDARG00000016117	exd2	79	60.721	ENSOPRG00000000078	EXD2	100	60.721	Ochotona_princeps
ENSDARG00000016117	exd2	100	54.372	ENSODEG00000014245	EXD2	100	54.372	Octodon_degus
ENSDARG00000016117	exd2	100	62.733	ENSONIG00000000385	exd2	100	63.003	Oreochromis_niloticus
ENSDARG00000016117	exd2	81	50.781	ENSOANG00000012621	EXD2	100	50.781	Ornithorhynchus_anatinus
ENSDARG00000016117	exd2	100	52.273	ENSOCUG00000006626	EXD2	100	53.049	Oryctolagus_cuniculus
ENSDARG00000016117	exd2	100	64.364	ENSORLG00000019790	exd2	100	64.632	Oryzias_latipes
ENSDARG00000016117	exd2	100	64.521	ENSORLG00020004434	exd2	100	64.789	Oryzias_latipes_hni
ENSDARG00000016117	exd2	100	64.678	ENSORLG00015001003	exd2	100	64.945	Oryzias_latipes_hsok
ENSDARG00000016117	exd2	100	64.006	ENSOMEG00000023552	exd2	100	64.431	Oryzias_melastigma
ENSDARG00000016117	exd2	100	54.574	ENSOGAG00000012059	EXD2	99	54.646	Otolemur_garnettii
ENSDARG00000016117	exd2	99	54.747	ENSOARG00000021181	EXD2	99	54.747	Ovis_aries
ENSDARG00000016117	exd2	100	54.675	ENSPPAG00000042293	EXD2	100	54.675	Pan_paniscus
ENSDARG00000016117	exd2	100	53.689	ENSPPRG00000002946	EXD2	100	53.689	Panthera_pardus
ENSDARG00000016117	exd2	100	53.689	ENSPTIG00000018876	EXD2	100	53.689	Panthera_tigris_altaica
ENSDARG00000016117	exd2	100	54.675	ENSPTRG00000006480	EXD2	100	61.122	Pan_troglodytes
ENSDARG00000016117	exd2	100	54.444	ENSPANG00000025013	EXD2	100	54.444	Papio_anubis
ENSDARG00000016117	exd2	99	66.667	ENSPKIG00000007907	exd2	99	66.983	Paramormyrops_kingsleyae
ENSDARG00000016117	exd2	100	53.968	ENSPSIG00000010111	EXD2	100	53.968	Pelodiscus_sinensis
ENSDARG00000016117	exd2	100	65.927	ENSPMGG00000021023	exd2	100	65.927	Periophthalmus_magnuspinnatus
ENSDARG00000016117	exd2	51	57.037	ENSPCIG00000012390	-	100	57.468	Phascolarctos_cinereus
ENSDARG00000016117	exd2	100	65.924	ENSPFOG00000004789	exd2	100	65.924	Poecilia_formosa
ENSDARG00000016117	exd2	100	63.932	ENSPLAG00000020798	exd2	100	63.932	Poecilia_latipinna
ENSDARG00000016117	exd2	100	64.396	ENSPMEG00000006063	exd2	100	64.396	Poecilia_mexicana
ENSDARG00000016117	exd2	100	66.137	ENSPREG00000008479	exd2	100	66.137	Poecilia_reticulata
ENSDARG00000016117	exd2	100	54.517	ENSPPYG00000005937	EXD2	100	54.517	Pongo_abelii
ENSDARG00000016117	exd2	79	60.521	ENSPCAG00000007242	EXD2	100	60.521	Procavia_capensis
ENSDARG00000016117	exd2	100	54.517	ENSPCOG00000028702	EXD2	99	54.517	Propithecus_coquereli
ENSDARG00000016117	exd2	79	60.922	ENSPVAG00000016901	EXD2	100	60.922	Pteropus_vampyrus
ENSDARG00000016117	exd2	100	62.422	ENSPNYG00000010343	exd2	100	62.539	Pundamilia_nyererei
ENSDARG00000016117	exd2	100	68.562	ENSPNAG00000009476	exd2	100	68.562	Pygocentrus_nattereri
ENSDARG00000016117	exd2	100	51.982	ENSRNOG00000027707	Exd2	100	52.511	Rattus_norvegicus
ENSDARG00000016117	exd2	100	54.732	ENSRBIG00000031108	EXD2	100	54.732	Rhinopithecus_bieti
ENSDARG00000016117	exd2	100	54.732	ENSRROG00000033249	EXD2	100	54.732	Rhinopithecus_roxellana
ENSDARG00000016117	exd2	100	54.041	ENSSBOG00000035171	EXD2	100	54.041	Saimiri_boliviensis_boliviensis
ENSDARG00000016117	exd2	99	53.438	ENSSHAG00000005008	EXD2	99	53.438	Sarcophilus_harrisii
ENSDARG00000016117	exd2	100	67.863	ENSSFOG00015006470	exd2	100	68.019	Scleropages_formosus
ENSDARG00000016117	exd2	100	58.499	ENSSMAG00000009321	exd2	100	59.174	Scophthalmus_maximus
ENSDARG00000016117	exd2	100	69.157	ENSSDUG00000001321	exd2	100	69.157	Seriola_dumerili
ENSDARG00000016117	exd2	100	67.026	ENSSLDG00000011348	exd2	100	67.026	Seriola_lalandi_dorsalis
ENSDARG00000016117	exd2	68	65.873	ENSSARG00000012747	EXD2	84	63.158	Sorex_araneus
ENSDARG00000016117	exd2	81	61.840	ENSSPUG00000002120	EXD2	100	61.840	Sphenodon_punctatus
ENSDARG00000016117	exd2	100	65.895	ENSSPAG00000002512	exd2	100	66.359	Stegastes_partitus
ENSDARG00000016117	exd2	99	55.255	ENSSSCG00000002305	EXD2	96	61.479	Sus_scrofa
ENSDARG00000016117	exd2	100	57.820	ENSTGUG00000011469	EXD2	100	57.820	Taeniopygia_guttata
ENSDARG00000016117	exd2	99	64.771	ENSTRUG00000003672	exd2	99	64.771	Takifugu_rubripes
ENSDARG00000016117	exd2	88	67.210	ENSTNIG00000003046	exd2	99	68.174	Tetraodon_nigroviridis
ENSDARG00000016117	exd2	78	61.010	ENSTTRG00000013954	EXD2	99	61.010	Tursiops_truncatus
ENSDARG00000016117	exd2	99	54.808	ENSUAMG00000010774	EXD2	99	54.690	Ursus_americanus
ENSDARG00000016117	exd2	98	54.896	ENSUMAG00000010083	EXD2	99	54.777	Ursus_maritimus
ENSDARG00000016117	exd2	67	63.208	ENSVPAG00000005658	EXD2	99	63.208	Vicugna_pacos
ENSDARG00000016117	exd2	100	55.031	ENSVVUG00000003704	EXD2	100	55.031	Vulpes_vulpes
ENSDARG00000016117	exd2	99	55.151	ENSXETG00000017930	exd2	99	55.151	Xenopus_tropicalis
ENSDARG00000016117	exd2	96	54.510	ENSXCOG00000014338	exd2	67	63.719	Xiphophorus_couchianus
ENSDARG00000016117	exd2	100	64.815	ENSXMAG00000003565	exd2	100	65.586	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006139	nucleobase-containing compound metabolic process	-	IEA	Process
GO:0008408	3'-5' exonuclease activity	21873635.	IBA	Function
GO:0008408	3'-5' exonuclease activity	-	IEA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component