EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000016302 (Gene tree)
Gene ID
406783
Gene Symbol
upf1
Alias
rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name
UPF1%2C RNA helicase and ATPase
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Plus strand
Length
68515 bases
Position
chr2:56168619-56237133
Accession
ZDB-GENE-040426-2836
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000013006UPF1_Zn_bindPF09416.101.2e-7411
ENSDARP00000153550UPF1_Zn_bindPF09416.101.2e-7411
ENSDARP00000013006ResIIIPF04851.154.1e-0511
ENSDARP00000153550ResIIIPF04851.154.1e-0511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000021011-8456XM_005163640ENSDARP000000130061100 (aa)XP_005163697F1RCY6
ENSDART00000180271-8615-ENSDARP000001535501100 (aa)-F1RCY6
ENSDART00000162582-3260-ENSDARP00000140654393 (aa)-A0A0R4IY20
Gene Model
Click here to download ENSDARG00000016302's gene model file
Pathways
Pathway IDPathway NameSource
dre03013RNA transportKEGG
dre03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000016302's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000016302upf110093.226ENSG00000005007UPF110092.781Homo_sapiens
ENSDARG00000016302upf110094.560ENSAPOG00000010916-10094.288Acanthochromis_polyacanthus
ENSDARG00000016302upf110094.299ENSAPOG00000023773upf110094.208Acanthochromis_polyacanthus
ENSDARG00000016302upf110092.902ENSAMEG00000011474UPF110092.458Ailuropoda_melanoleuca
ENSDARG00000016302upf110094.751ENSACIG00000019949upf110094.727Amphilophus_citrinellus
ENSDARG00000016302upf19393.872ENSACIG00000010985-10093.677Amphilophus_citrinellus
ENSDARG00000016302upf110094.075ENSAOCG00000018519upf110093.896Amphiprion_ocellaris
ENSDARG00000016302upf110094.651ENSAOCG00000006352-10094.379Amphiprion_ocellaris
ENSDARG00000016302upf110094.075ENSAPEG00000016344upf110093.896Amphiprion_percula
ENSDARG00000016302upf110094.651ENSAPEG00000006292-10094.379Amphiprion_percula
ENSDARG00000016302upf110094.560ENSATEG00000016606-10094.288Anabas_testudineus
ENSDARG00000016302upf110093.226ENSATEG00000017867upf110093.728Anabas_testudineus
ENSDARG00000016302upf19595.170ENSAPLG00000009175UPF110094.602Anas_platyrhynchos
ENSDARG00000016302upf19592.729ENSANAG00000024107UPF19692.162Aotus_nancymaae
ENSDARG00000016302upf110094.465ENSACLG00000022630-10094.192Astatotilapia_calliptera
ENSDARG00000016302upf110094.570ENSACLG00000007181upf110094.545Astatotilapia_calliptera
ENSDARG00000016302upf110098.909ENSAMXG00000042187upf110098.909Astyanax_mexicanus
ENSDARG00000016302upf110092.914ENSBTAG00000020922UPF110092.471Bos_taurus
ENSDARG00000016302upf18154.707WBGene00004880smg-28354.485Caenorhabditis_elegans
ENSDARG00000016302upf110092.491ENSCJAG00000019627UPF110092.049Callithrix_jacchus
ENSDARG00000016302upf110092.668ENSCAFG00000014578UPF110092.226Canis_familiaris
ENSDARG00000016302upf110093.405ENSCAFG00020012347UPF110092.959Canis_lupus_dingo
ENSDARG00000016302upf110093.655ENSCHIG00000011018UPF110093.208Capra_hircus
ENSDARG00000016302upf19594.397ENSTSYG00000008877UPF19893.827Carlito_syrichta
ENSDARG00000016302upf19693.521ENSCAPG00000005758UPF19593.637Cavia_aperea
ENSDARG00000016302upf110093.441ENSCPOG00000025463UPF110092.902Cavia_porcellus
ENSDARG00000016302upf110093.226ENSCCAG00000032175UPF110092.781Cebus_capucinus
ENSDARG00000016302upf19494.662ENSCATG00000040306UPF19893.922Cercocebus_atys
ENSDARG00000016302upf19594.587ENSCLAG00000004037UPF19994.017Chinchilla_lanigera
ENSDARG00000016302upf110093.226ENSCSAG00000005276UPF110092.781Chlorocebus_sabaeus
ENSDARG00000016302upf110093.728ENSCPBG00000012513UPF110093.190Chrysemys_picta_bellii
ENSDARG00000016302upf17780.070ENSCING00000021399-9979.484Ciona_intestinalis
ENSDARG00000016302upf19972.547ENSCSAVG00000006533-9972.457Ciona_savignyi
ENSDARG00000016302upf19594.587ENSCANG00000029819UPF19794.017Colobus_angolensis_palliatus
ENSDARG00000016302upf110093.107ENSCGRG00001021067Upf110092.659Cricetulus_griseus_chok1gshd
ENSDARG00000016302upf19594.017ENSCGRG00000013480Upf19893.447Cricetulus_griseus_crigri
ENSDARG00000016302upf110094.374ENSCSEG00000016159-10093.739Cynoglossus_semilaevis
ENSDARG00000016302upf110088.566ENSCSEG00000017239upf110088.475Cynoglossus_semilaevis
ENSDARG00000016302upf110094.288ENSCVAG00000010561upf110094.016Cyprinodon_variegatus
ENSDARG00000016302upf19592.030ENSDORG00000009984Upf19591.461Dipodomys_ordii
ENSDARG00000016302upf18572.495FBgn0030354Upf18270.812Drosophila_melanogaster
ENSDARG00000016302upf15486.612ENSEBUG00000010069upf19686.942Eptatretus_burgeri
ENSDARG00000016302upf110093.566ENSEASG00005006549UPF110093.119Equus_asinus_asinus
ENSDARG00000016302upf110093.566ENSECAG00000010639UPF110093.119Equus_caballus
ENSDARG00000016302upf110094.299ENSELUG00000020917upf110093.303Esox_lucius
ENSDARG00000016302upf110093.948ENSELUG00000012916-10094.490Esox_lucius
ENSDARG00000016302upf110092.668ENSFCAG00000009757UPF110092.226Felis_catus
ENSDARG00000016302upf19595.524ENSFALG00000009312UPF19694.952Ficedula_albicollis
ENSDARG00000016302upf19594.492ENSFDAG00000014816UPF19993.922Fukomys_damarensis
ENSDARG00000016302upf18694.030ENSFHEG00000016276-9694.030Fundulus_heteroclitus
ENSDARG00000016302upf110090.917ENSFHEG00000006428upf110089.964Fundulus_heteroclitus
ENSDARG00000016302upf110092.819ENSGMOG00000007541upf110093.088Gadus_morhua
ENSDARG00000016302upf110093.750ENSGALG00000003220UPF110093.125Gallus_gallus
ENSDARG00000016302upf16395.683ENSGAFG00000015443-8595.683Gambusia_affinis
ENSDARG00000016302upf110094.288ENSGAFG00000004831upf110094.016Gambusia_affinis
ENSDARG00000016302upf110094.329ENSGAGG00000022217UPF110093.879Gopherus_agassizii
ENSDARG00000016302upf19595.398ENSGGOG00000002608UPF19994.823Gorilla_gorilla
ENSDARG00000016302upf18697.436ENSHBUG00000008939upf19597.436Haplochromis_burtoni
ENSDARG00000016302upf19086.207ENSHBUG00000014694upf110086.207Haplochromis_burtoni
ENSDARG00000016302upf110092.226ENSHGLG00000010900UPF110091.784Heterocephalus_glaber_female
ENSDARG00000016302upf19592.593ENSHGLG00100005904UPF19692.023Heterocephalus_glaber_male
ENSDARG00000016302upf110094.107ENSHCOG00000008918upf110094.107Hippocampus_comes
ENSDARG00000016302upf110098.545ENSIPUG00000005108UPF110098.545Ictalurus_punctatus
ENSDARG00000016302upf110093.226ENSSTOG00000009196UPF110092.781Ictidomys_tridecemlineatus
ENSDARG00000016302upf110092.444ENSJJAG00000023151Upf110092.000Jaculus_jaculus
ENSDARG00000016302upf110094.198ENSKMAG00000004962upf110093.926Kryptolebias_marmoratus
ENSDARG00000016302upf110093.496ENSLBEG00000027848-10094.107Labrus_bergylta
ENSDARG00000016302upf110093.088ENSLBEG00000014862upf110093.178Labrus_bergylta
ENSDARG00000016302upf16396.132ENSLACG00000008482UPF110095.559Latimeria_chalumnae
ENSDARG00000016302upf110096.733ENSLOCG00000002072upf110096.733Lepisosteus_oculatus
ENSDARG00000016302upf110092.389ENSLAFG00000014963UPF110091.947Loxodonta_africana
ENSDARG00000016302upf110093.149ENSMFAG00000037748UPF110092.705Macaca_fascicularis
ENSDARG00000016302upf110092.902ENSMMUG00000023286UPF110092.458Macaca_mulatta
ENSDARG00000016302upf110093.149ENSMNEG00000000046UPF110092.705Macaca_nemestrina
ENSDARG00000016302upf19594.587ENSMLEG00000028404UPF19994.017Mandrillus_leucophaeus
ENSDARG00000016302upf110092.832ENSMAMG00000006229upf110093.459Mastacembelus_armatus
ENSDARG00000016302upf110093.200ENSMAMG00000006231-10094.016Mastacembelus_armatus
ENSDARG00000016302upf110093.560ENSMZEG00005003489upf110093.969Maylandia_zebra
ENSDARG00000016302upf110094.465ENSMZEG00005016386-10094.192Maylandia_zebra
ENSDARG00000016302upf19594.687ENSMGAG00000004745UPF110094.118Meleagris_gallopavo
ENSDARG00000016302upf19594.017ENSMAUG00000011398Upf19593.447Mesocricetus_auratus
ENSDARG00000016302upf110093.137ENSMICG00000001659UPF110092.692Microcebus_murinus
ENSDARG00000016302upf110092.369ENSMOCG00000005699Upf110092.014Microtus_ochrogaster
ENSDARG00000016302upf110093.818ENSMMOG00000007881upf110093.727Mola_mola
ENSDARG00000016302upf19592.073ENSMMOG00000007537-9991.786Mola_mola
ENSDARG00000016302upf110092.687ENSMODG00000003689UPF110092.335Monodelphis_domestica
ENSDARG00000016302upf110093.044ENSMALG00000018100-10092.773Monopterus_albus
ENSDARG00000016302upf110094.182ENSMALG00000000144upf110094.091Monopterus_albus
ENSDARG00000016302upf110093.017MGP_CAROLIEiJ_G0031142Upf110092.569Mus_caroli
ENSDARG00000016302upf110093.017ENSMUSG00000058301Upf110092.569Mus_musculus
ENSDARG00000016302upf110093.017MGP_PahariEiJ_G0021607Upf110092.569Mus_pahari
ENSDARG00000016302upf110093.017MGP_SPRETEiJ_G0032260Upf110092.569Mus_spretus
ENSDARG00000016302upf110093.405ENSMPUG00000015516UPF110092.959Mustela_putorius_furo
ENSDARG00000016302upf19993.292ENSMLUG00000012122UPF19992.844Myotis_lucifugus
ENSDARG00000016302upf110092.035ENSNGAG00000024107Upf110091.593Nannospalax_galili
ENSDARG00000016302upf110090.989ENSNBRG00000022069-10093.501Neolamprologus_brichardi
ENSDARG00000016302upf110092.760ENSNBRG00000000670upf110092.727Neolamprologus_brichardi
ENSDARG00000016302upf19588.794ENSNLEG00000006062UPF19988.224Nomascus_leucogenys
ENSDARG00000016302upf18390.234ENSMEUG00000014146-8389.062Notamacropus_eugenii
ENSDARG00000016302upf19588.495ENSOPRG00000014018UPF19987.919Ochotona_princeps
ENSDARG00000016302upf110093.615ENSODEG00000012426UPF110093.076Octodon_degus
ENSDARG00000016302upf110094.465ENSONIG00000012729-10094.192Oreochromis_niloticus
ENSDARG00000016302upf110093.560ENSONIG00000010452upf110093.969Oreochromis_niloticus
ENSDARG00000016302upf110092.743ENSOANG00000004568UPF110092.035Ornithorhynchus_anatinus
ENSDARG00000016302upf110094.379ENSORLG00000008453upf110094.107Oryzias_latipes
ENSDARG00000016302upf110094.293ENSORLG00020014758upf110094.022Oryzias_latipes_hni
ENSDARG00000016302upf110094.293ENSORLG00015010165upf110094.022Oryzias_latipes_hsok
ENSDARG00000016302upf110094.470ENSOMEG00000003665upf110094.198Oryzias_melastigma
ENSDARG00000016302upf110093.316ENSOGAG00000012866UPF110092.870Otolemur_garnettii
ENSDARG00000016302upf19691.820ENSOARG00000010739UPF110091.085Ovis_aries
ENSDARG00000016302upf19594.587ENSPPAG00000043884UPF19694.017Pan_paniscus
ENSDARG00000016302upf110092.668ENSPPRG00000023470UPF110092.226Panthera_pardus
ENSDARG00000016302upf19593.397ENSPTIG00000010159UPF19992.823Panthera_tigris_altaica
ENSDARG00000016302upf110093.149ENSPTRG00000010721UPF110092.705Pan_troglodytes
ENSDARG00000016302upf110093.149ENSPANG00000008847UPF110092.705Papio_anubis
ENSDARG00000016302upf19196.524ENSPKIG00000006069upf19796.524Paramormyrops_kingsleyae
ENSDARG00000016302upf17094.654ENSPSIG00000009491UPF110093.872Pelodiscus_sinensis
ENSDARG00000016302upf110093.019ENSPMGG00000017327upf110093.019Periophthalmus_magnuspinnatus
ENSDARG00000016302upf110092.369ENSPEMG00000001085Upf110091.925Peromyscus_maniculatus_bairdii
ENSDARG00000016302upf110088.018ENSPMAG00000001206upf110087.466Petromyzon_marinus
ENSDARG00000016302upf110093.934ENSPCIG00000006156UPF110093.488Phascolarctos_cinereus
ENSDARG00000016302upf110093.472ENSPLAG00000016232-10093.200Poecilia_latipinna
ENSDARG00000016302upf110092.356ENSPLAG00000018155-10091.794Poecilia_latipinna
ENSDARG00000016302upf110092.670ENSPMEG00000011443-10092.455Poecilia_mexicana
ENSDARG00000016302upf110093.563ENSPMEG00000016319-10093.291Poecilia_mexicana
ENSDARG00000016302upf110092.529ENSPREG00000009940upf110092.079Poecilia_reticulata
ENSDARG00000016302upf110093.291ENSPREG00000011247-10093.019Poecilia_reticulata
ENSDARG00000016302upf110087.633ENSPPYG00000009752UPF110087.279Pongo_abelii
ENSDARG00000016302upf17598.990ENSPCAG00000012962UPF17698.990Procavia_capensis
ENSDARG00000016302upf110093.073ENSPCOG00000023813UPF110092.629Propithecus_coquereli
ENSDARG00000016302upf16897.436ENSPVAG00000003183UPF16997.436Pteropus_vampyrus
ENSDARG00000016302upf110094.465ENSPNYG00000016731-10094.192Pundamilia_nyererei
ENSDARG00000016302upf110093.560ENSPNYG00000003694upf110093.969Pundamilia_nyererei
ENSDARG00000016302upf110099.000ENSPNAG00000025614upf110099.000Pygocentrus_nattereri
ENSDARG00000016302upf110093.017ENSRNOG00000020134Upf110092.569Rattus_norvegicus
ENSDARG00000016302upf19592.213ENSRBIG00000013894UPF19894.869Rhinopithecus_bieti
ENSDARG00000016302upf19594.587ENSRROG00000040935UPF19894.869Rhinopithecus_roxellana
ENSDARG00000016302upf17357.697YMR080CNAM78456.916Saccharomyces_cerevisiae
ENSDARG00000016302upf19594.582ENSSBOG00000023632UPF19694.011Saimiri_boliviensis_boliviensis
ENSDARG00000016302upf19594.976ENSSHAG00000010499UPF110094.408Sarcophilus_harrisii
ENSDARG00000016302upf110097.005ENSSFOG00015021095upf110097.005Scleropages_formosus
ENSDARG00000016302upf110092.370ENSSMAG00000005055upf110092.460Scophthalmus_maximus
ENSDARG00000016302upf110094.832ENSSMAG00000021018-10094.560Scophthalmus_maximus
ENSDARG00000016302upf110093.190ENSSDUG00000013320upf110093.728Seriola_dumerili
ENSDARG00000016302upf110094.742ENSSDUG00000009629-10094.470Seriola_dumerili
ENSDARG00000016302upf110094.742ENSSLDG00000006878-10094.470Seriola_lalandi_dorsalis
ENSDARG00000016302upf110094.033ENSSLDG00000020868upf110094.314Seriola_lalandi_dorsalis
ENSDARG00000016302upf110094.070ENSSPUG00000010538UPF110093.621Sphenodon_punctatus
ENSDARG00000016302upf110092.566ENSSPAG00000000003upf110092.196Stegastes_partitus
ENSDARG00000016302upf110093.835ENSSPAG00000011521-10093.563Stegastes_partitus
ENSDARG00000016302upf110093.566ENSSSCG00000039301UPF19994.833Sus_scrofa
ENSDARG00000016302upf18288.085ENSTGUG00000001057UPF110092.308Taeniopygia_guttata
ENSDARG00000016302upf110093.545ENSTRUG00000000150upf110093.364Takifugu_rubripes
ENSDARG00000016302upf110093.654ENSTRUG00000005131-10093.382Takifugu_rubripes
ENSDARG00000016302upf110089.902ENSTTRG00000011544UPF110089.366Tursiops_truncatus
ENSDARG00000016302upf110093.405ENSUAMG00000007093UPF110092.959Ursus_americanus
ENSDARG00000016302upf19991.735ENSUMAG00000006652UPF19995.450Ursus_maritimus
ENSDARG00000016302upf110093.405ENSVVUG00000007797UPF110092.959Vulpes_vulpes
ENSDARG00000016302upf110080.810ENSXETG00000013602upf110080.194Xenopus_tropicalis
ENSDARG00000016302upf19792.756ENSXCOG00000015275-9692.763Xiphophorus_couchianus
ENSDARG00000016302upf19494.773ENSXCOG00000005764-9994.482Xiphophorus_couchianus
ENSDARG00000016302upf110094.379ENSXMAG00000002540-10094.107Xiphophorus_maculatus
ENSDARG00000016302upf110092.909ENSXMAG00000001703-10092.916Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay21873635.IBAProcess
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay-IEAProcess
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay19414594.IMPProcess
GO:0000956nuclear-transcribed mRNA catabolic process28648842.IGIProcess
GO:0000956nuclear-transcribed mRNA catabolic process23828042.IMPProcess
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0004004ATP-dependent RNA helicase activity21873635.IBAFunction
GO:0004386helicase activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm-IEAComponent
GO:0008270zinc ion binding-IEAFunction
GO:0016787hydrolase activity-IEAFunction
GO:0043009chordate embryonic development19414594.IMPProcess

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