EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000016399 (Gene tree)
Gene ID: 406268
Gene Symbol: riok1
Alias: fb99f04|wu:fb99f04|zgc:56195
Full Name: RIO kinase 1 (yeast)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 12911 bases
Position: chr2:21063660-21076570
Accession: ZDB-GENE-040426-1927
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000022653	RIO1	PF01163.22	8.9e-76	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000140922	-	786	-	ENSDARP00000127585	124 (aa)	-	X1WBJ4
ENSDART00000022765	-	1955	-	ENSDARP00000022653	552 (aa)	-	B0UXW2

Gene Model

Click here to download ENSDARG00000016399's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000016399's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000016399	riok1	62	38.674	ENSDARG00000042751	riok3	56	44.251

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000016399	riok1	100	69.326	ENSG00000124784	RIOK1	99	68.972	Homo_sapiens
ENSDARG00000016399	riok1	57	71.154	ENSAPOG00000015632	riok1	99	70.513	Acanthochromis_polyacanthus
ENSDARG00000016399	riok1	100	69.558	ENSAMEG00000017367	RIOK1	99	69.027	Ailuropoda_melanoleuca
ENSDARG00000016399	riok1	89	75.918	ENSACIG00000003735	riok1	88	76.289	Amphilophus_citrinellus
ENSDARG00000016399	riok1	100	70.833	ENSAOCG00000011818	riok1	100	69.746	Amphiprion_ocellaris
ENSDARG00000016399	riok1	100	70.833	ENSAPEG00000001345	riok1	100	69.746	Amphiprion_percula
ENSDARG00000016399	riok1	82	76.275	ENSATEG00000006594	riok1	99	76.275	Anabas_testudineus
ENSDARG00000016399	riok1	84	74.364	ENSAPLG00000004196	RIOK1	100	74.364	Anas_platyrhynchos
ENSDARG00000016399	riok1	100	69.965	ENSACAG00000000695	RIOK1	99	68.561	Anolis_carolinensis
ENSDARG00000016399	riok1	100	58.722	ENSANAG00000023777	RIOK1	99	60.816	Aotus_nancymaae
ENSDARG00000016399	riok1	99	72.645	ENSACLG00000015799	riok1	99	70.833	Astatotilapia_calliptera
ENSDARG00000016399	riok1	100	76.522	ENSAMXG00000015286	riok1	99	76.399	Astyanax_mexicanus
ENSDARG00000016399	riok1	100	68.617	ENSBTAG00000013821	RIOK1	99	68.078	Bos_taurus
ENSDARG00000016399	riok1	86	45.918	WBGene00019698	riok-1	86	45.567	Caenorhabditis_elegans
ENSDARG00000016399	riok1	100	67.895	ENSCJAG00000042960	RIOK1	99	69.002	Callithrix_jacchus
ENSDARG00000016399	riok1	87	74.037	ENSCAFG00000009563	RIOK1	99	68.496	Canis_familiaris
ENSDARG00000016399	riok1	80	74.777	ENSCAFG00020013233	RIOK1	86	72.371	Canis_lupus_dingo
ENSDARG00000016399	riok1	100	67.668	ENSCHIG00000001534	RIOK1	99	67.135	Capra_hircus
ENSDARG00000016399	riok1	66	70.822	ENSTSYG00000011368	RIOK1	100	70.642	Carlito_syrichta
ENSDARG00000016399	riok1	79	73.068	ENSCAPG00000008489	RIOK1	100	72.629	Cavia_aperea
ENSDARG00000016399	riok1	97	67.084	ENSCPOG00000009882	RIOK1	99	67.544	Cavia_porcellus
ENSDARG00000016399	riok1	100	69.681	ENSCCAG00000024061	RIOK1	99	69.504	Cebus_capucinus
ENSDARG00000016399	riok1	100	70.390	ENSCATG00000001548	RIOK1	99	70.035	Cercocebus_atys
ENSDARG00000016399	riok1	100	68.959	ENSCLAG00000003522	RIOK1	99	68.430	Chinchilla_lanigera
ENSDARG00000016399	riok1	91	70.254	ENSCSAG00000007396	RIOK1	89	72.727	Chlorocebus_sabaeus
ENSDARG00000016399	riok1	85	59.813	ENSCHOG00000001873	RIOK1	84	59.813	Choloepus_hoffmanni
ENSDARG00000016399	riok1	88	72.464	ENSCPBG00000008685	RIOK1	82	72.464	Chrysemys_picta_bellii
ENSDARG00000016399	riok1	100	70.213	ENSCANG00000032919	RIOK1	99	69.326	Colobus_angolensis_palliatus
ENSDARG00000016399	riok1	100	67.730	ENSCGRG00001018868	Riok1	99	66.667	Cricetulus_griseus_chok1gshd
ENSDARG00000016399	riok1	100	67.730	ENSCGRG00000008015	Riok1	99	66.667	Cricetulus_griseus_crigri
ENSDARG00000016399	riok1	89	52.789	ENSCSEG00000015014	riok1	87	53.119	Cynoglossus_semilaevis
ENSDARG00000016399	riok1	57	67.834	ENSCVAG00000011291	riok1	99	67.834	Cyprinodon_variegatus
ENSDARG00000016399	riok1	100	67.244	ENSDNOG00000015813	RIOK1	99	66.028	Dasypus_novemcinctus
ENSDARG00000016399	riok1	100	68.126	ENSDORG00000008530	Riok1	99	67.247	Dipodomys_ordii
ENSDARG00000016399	riok1	77	52.561	FBgn0036187	RIOK1	82	50.101	Drosophila_melanogaster
ENSDARG00000016399	riok1	100	66.140	ENSETEG00000020273	RIOK1	99	65.789	Echinops_telfairi
ENSDARG00000016399	riok1	87	65.914	ENSEBUG00000013672	riok1	98	62.298	Eptatretus_burgeri
ENSDARG00000016399	riok1	93	67.810	ENSEASG00005012032	RIOK1	85	70.816	Equus_asinus_asinus
ENSDARG00000016399	riok1	100	68.421	ENSECAG00000009007	RIOK1	99	67.895	Equus_caballus
ENSDARG00000016399	riok1	76	64.539	ENSEEUG00000007123	RIOK1	90	67.172	Erinaceus_europaeus
ENSDARG00000016399	riok1	100	73.703	ENSELUG00000017029	riok1	99	73.609	Esox_lucius
ENSDARG00000016399	riok1	100	64.298	ENSFCAG00000027290	RIOK1	99	66.316	Felis_catus
ENSDARG00000016399	riok1	100	68.327	ENSFALG00000013244	RIOK1	99	68.683	Ficedula_albicollis
ENSDARG00000016399	riok1	100	67.365	ENSFDAG00000019139	RIOK1	99	67.372	Fukomys_damarensis
ENSDARG00000016399	riok1	71	77.806	ENSFHEG00000021419	riok1	98	68.966	Fundulus_heteroclitus
ENSDARG00000016399	riok1	75	75.604	ENSGMOG00000018668	riok1	95	76.167	Gadus_morhua
ENSDARG00000016399	riok1	57	69.018	ENSGALG00000012795	RIOK1	100	68.615	Gallus_gallus
ENSDARG00000016399	riok1	84	63.305	ENSGAFG00000004091	riok1	79	62.236	Gambusia_affinis
ENSDARG00000016399	riok1	97	71.136	ENSGACG00000002496	riok1	94	78.512	Gasterosteus_aculeatus
ENSDARG00000016399	riok1	83	71.957	ENSGAGG00000002262	RIOK1	96	71.957	Gopherus_agassizii
ENSDARG00000016399	riok1	100	60.688	ENSGGOG00000011037	RIOK1	78	71.429	Gorilla_gorilla
ENSDARG00000016399	riok1	100	68.028	ENSHGLG00000008699	RIOK1	99	65.493	Heterocephalus_glaber_female
ENSDARG00000016399	riok1	100	68.206	ENSHGLG00100008188	RIOK1	99	67.496	Heterocephalus_glaber_male
ENSDARG00000016399	riok1	89	72.984	ENSHCOG00000013275	riok1	91	72.188	Hippocampus_comes
ENSDARG00000016399	riok1	100	77.993	ENSIPUG00000003290	riok1	100	77.289	Ictalurus_punctatus
ENSDARG00000016399	riok1	100	67.601	ENSSTOG00000009289	RIOK1	99	68.126	Ictidomys_tridecemlineatus
ENSDARG00000016399	riok1	100	70.035	ENSJJAG00000015152	Riok1	99	67.958	Jaculus_jaculus
ENSDARG00000016399	riok1	70	76.410	ENSKMAG00000019378	riok1	100	76.410	Kryptolebias_marmoratus
ENSDARG00000016399	riok1	89	76.876	ENSLBEG00000016650	riok1	87	77.664	Labrus_bergylta
ENSDARG00000016399	riok1	99	62.367	ENSLACG00000000300	RIOK1	98	61.947	Latimeria_chalumnae
ENSDARG00000016399	riok1	99	72.114	ENSLOCG00000011728	riok1	98	71.758	Lepisosteus_oculatus
ENSDARG00000016399	riok1	100	67.730	ENSLAFG00000005504	RIOK1	99	68.085	Loxodonta_africana
ENSDARG00000016399	riok1	100	70.390	ENSMFAG00000029990	RIOK1	99	70.035	Macaca_fascicularis
ENSDARG00000016399	riok1	100	70.213	ENSMMUG00000015577	RIOK1	99	69.858	Macaca_mulatta
ENSDARG00000016399	riok1	100	67.553	ENSMNEG00000034396	RIOK1	97	72.609	Macaca_nemestrina
ENSDARG00000016399	riok1	100	69.681	ENSMLEG00000026327	RIOK1	99	69.326	Mandrillus_leucophaeus
ENSDARG00000016399	riok1	99	70.909	ENSMAMG00000019557	riok1	99	70.364	Mastacembelus_armatus
ENSDARG00000016399	riok1	99	72.645	ENSMZEG00005019482	riok1	99	71.403	Maylandia_zebra
ENSDARG00000016399	riok1	100	68.449	ENSMGAG00000003816	RIOK1	99	68.806	Meleagris_gallopavo
ENSDARG00000016399	riok1	100	67.553	ENSMAUG00000012751	Riok1	99	65.957	Mesocricetus_auratus
ENSDARG00000016399	riok1	100	69.149	ENSMICG00000044301	RIOK1	83	68.794	Microcebus_murinus
ENSDARG00000016399	riok1	100	67.318	ENSMOCG00000017032	Riok1	99	66.607	Microtus_ochrogaster
ENSDARG00000016399	riok1	84	66.935	ENSMMOG00000020598	riok1	87	67.742	Mola_mola
ENSDARG00000016399	riok1	87	73.577	ENSMODG00000009964	RIOK1	99	68.206	Monodelphis_domestica
ENSDARG00000016399	riok1	89	67.076	ENSMALG00000019982	riok1	91	68.632	Monopterus_albus
ENSDARG00000016399	riok1	100	67.199	MGP_CAROLIEiJ_G0018439	Riok1	99	66.489	Mus_caroli
ENSDARG00000016399	riok1	100	67.021	ENSMUSG00000021428	Riok1	99	67.476	Mus_musculus
ENSDARG00000016399	riok1	100	66.784	MGP_PahariEiJ_G0019507	Riok1	99	66.254	Mus_pahari
ENSDARG00000016399	riok1	100	67.199	MGP_SPRETEiJ_G0019319	Riok1	99	66.844	Mus_spretus
ENSDARG00000016399	riok1	100	68.728	ENSMPUG00000000570	RIOK1	99	67.719	Mustela_putorius_furo
ENSDARG00000016399	riok1	100	69.735	ENSMLUG00000015312	RIOK1	99	69.381	Myotis_lucifugus
ENSDARG00000016399	riok1	100	69.504	ENSNGAG00000021734	Riok1	99	66.200	Nannospalax_galili
ENSDARG00000016399	riok1	72	81.864	ENSNBRG00000017489	riok1	76	81.864	Neolamprologus_brichardi
ENSDARG00000016399	riok1	100	63.225	ENSNLEG00000011621	RIOK1	99	62.050	Nomascus_leucogenys
ENSDARG00000016399	riok1	84	48.203	ENSMEUG00000006679	-	84	47.992	Notamacropus_eugenii
ENSDARG00000016399	riok1	67	71.698	ENSOPRG00000009524	RIOK1	100	71.698	Ochotona_princeps
ENSDARG00000016399	riok1	72	61.153	ENSODEG00000005663	RIOK1	98	61.404	Octodon_degus
ENSDARG00000016399	riok1	99	71.609	ENSONIG00000014010	riok1	87	76.434	Oreochromis_niloticus
ENSDARG00000016399	riok1	82	74.784	ENSOANG00000012553	RIOK1	100	75.216	Ornithorhynchus_anatinus
ENSDARG00000016399	riok1	100	69.081	ENSOCUG00000011824	RIOK1	99	67.018	Oryctolagus_cuniculus
ENSDARG00000016399	riok1	99	70.163	ENSORLG00000008221	riok1	99	70.163	Oryzias_latipes
ENSDARG00000016399	riok1	99	67.877	ENSORLG00020013838	riok1	70	67.695	Oryzias_latipes_hni
ENSDARG00000016399	riok1	99	70.599	ENSORLG00015009817	riok1	98	70.344	Oryzias_latipes_hsok
ENSDARG00000016399	riok1	99	69.439	ENSOMEG00000002758	riok1	89	69.078	Oryzias_melastigma
ENSDARG00000016399	riok1	100	64.464	ENSOGAG00000010192	RIOK1	99	64.516	Otolemur_garnettii
ENSDARG00000016399	riok1	100	68.430	ENSOARG00000017747	RIOK1	99	66.842	Ovis_aries
ENSDARG00000016399	riok1	100	61.593	ENSPPAG00000016349	RIOK1	100	70.405	Pan_paniscus
ENSDARG00000016399	riok1	100	67.304	ENSPPRG00000001932	RIOK1	99	66.025	Panthera_pardus
ENSDARG00000016399	riok1	100	67.478	ENSPTIG00000018545	RIOK1	99	66.200	Panthera_tigris_altaica
ENSDARG00000016399	riok1	100	69.149	ENSPTRG00000017700	RIOK1	99	68.794	Pan_troglodytes
ENSDARG00000016399	riok1	100	70.390	ENSPANG00000016522	RIOK1	99	69.681	Papio_anubis
ENSDARG00000016399	riok1	100	72.549	ENSPKIG00000006442	riok1	100	72.872	Paramormyrops_kingsleyae
ENSDARG00000016399	riok1	100	68.739	ENSPSIG00000006488	RIOK1	97	69.449	Pelodiscus_sinensis
ENSDARG00000016399	riok1	72	72.980	ENSPMGG00000017807	riok1	96	66.298	Periophthalmus_magnuspinnatus
ENSDARG00000016399	riok1	100	67.133	ENSPEMG00000017844	Riok1	99	66.667	Peromyscus_maniculatus_bairdii
ENSDARG00000016399	riok1	74	66.587	ENSPMAG00000006351	riok1	98	66.587	Petromyzon_marinus
ENSDARG00000016399	riok1	78	74.419	ENSPCIG00000012653	RIOK1	86	70.370	Phascolarctos_cinereus
ENSDARG00000016399	riok1	99	65.273	ENSPFOG00000011532	riok1	100	64.706	Poecilia_formosa
ENSDARG00000016399	riok1	99	64.493	ENSPLAG00000001341	riok1	100	64.706	Poecilia_latipinna
ENSDARG00000016399	riok1	99	65.455	ENSPMEG00000007710	riok1	100	64.884	Poecilia_mexicana
ENSDARG00000016399	riok1	99	66.004	ENSPREG00000009237	riok1	100	64.580	Poecilia_reticulata
ENSDARG00000016399	riok1	100	69.558	ENSPPYG00000016207	RIOK1	99	69.204	Pongo_abelii
ENSDARG00000016399	riok1	100	60.106	ENSPCAG00000007892	RIOK1	99	58.144	Procavia_capensis
ENSDARG00000016399	riok1	100	68.947	ENSPVAG00000014091	RIOK1	99	68.421	Pteropus_vampyrus
ENSDARG00000016399	riok1	57	75.873	ENSPNYG00000004465	riok1	100	76.190	Pundamilia_nyererei
ENSDARG00000016399	riok1	100	77.580	ENSPNAG00000015435	riok1	99	77.758	Pygocentrus_nattereri
ENSDARG00000016399	riok1	100	67.788	ENSRNOG00000014049	Riok1	100	72.414	Rattus_norvegicus
ENSDARG00000016399	riok1	100	70.035	ENSRBIG00000036685	RIOK1	99	69.149	Rhinopithecus_bieti
ENSDARG00000016399	riok1	100	70.213	ENSRROG00000036611	RIOK1	99	69.326	Rhinopithecus_roxellana
ENSDARG00000016399	riok1	64	39.276	YOR119C	RIO1	96	36.895	Saccharomyces_cerevisiae
ENSDARG00000016399	riok1	100	68.126	ENSSBOG00000012588	RIOK1	99	67.951	Saimiri_boliviensis_boliviensis
ENSDARG00000016399	riok1	72	79.345	ENSSHAG00000003091	RIOK1	92	70.894	Sarcophilus_harrisii
ENSDARG00000016399	riok1	88	81.263	ENSSFOG00015001035	riok1	99	75.179	Scleropages_formosus
ENSDARG00000016399	riok1	57	69.716	ENSSDUG00000007291	riok1	100	69.716	Seriola_dumerili
ENSDARG00000016399	riok1	99	73.321	ENSSLDG00000017657	riok1	99	72.313	Seriola_lalandi_dorsalis
ENSDARG00000016399	riok1	86	63.941	ENSSPUG00000007624	RIOK1	83	63.941	Sphenodon_punctatus
ENSDARG00000016399	riok1	100	70.991	ENSSPAG00000022710	riok1	100	69.910	Stegastes_partitus
ENSDARG00000016399	riok1	100	68.617	ENSSSCG00000001024	RIOK1	99	67.553	Sus_scrofa
ENSDARG00000016399	riok1	87	73.441	ENSTGUG00000002331	RIOK1	99	69.027	Taeniopygia_guttata
ENSDARG00000016399	riok1	51	65.385	ENSTRUG00000001575	-	100	64.685	Takifugu_rubripes
ENSDARG00000016399	riok1	82	58.462	ENSTRUG00000002854	riok1	95	63.049	Takifugu_rubripes
ENSDARG00000016399	riok1	99	62.589	ENSTNIG00000003078	riok1	98	62.234	Tetraodon_nigroviridis
ENSDARG00000016399	riok1	100	64.799	ENSTBEG00000016730	RIOK1	99	62.867	Tupaia_belangeri
ENSDARG00000016399	riok1	70	79.381	ENSTTRG00000017335	RIOK1	81	79.381	Tursiops_truncatus
ENSDARG00000016399	riok1	93	69.423	ENSUAMG00000003721	RIOK1	86	72.577	Ursus_americanus
ENSDARG00000016399	riok1	100	69.735	ENSUMAG00000018461	RIOK1	99	69.381	Ursus_maritimus
ENSDARG00000016399	riok1	59	80.426	ENSVPAG00000010813	-	63	80.426	Vicugna_pacos
ENSDARG00000016399	riok1	87	74.442	ENSVVUG00000005018	RIOK1	99	68.496	Vulpes_vulpes
ENSDARG00000016399	riok1	89	69.919	ENSXETG00000020436	riok1	86	70.833	Xenopus_tropicalis
ENSDARG00000016399	riok1	84	67.026	ENSXCOG00000000245	riok1	100	67.742	Xiphophorus_couchianus
ENSDARG00000016399	riok1	74	72.263	ENSXMAG00000014572	riok1	80	72.155	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0004674	protein serine/threonine kinase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0016301	kinase activity	-	IEA	Function
GO:0016310	phosphorylation	-	IEA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0030490	maturation of SSU-rRNA	21873635.	IBA	Process
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component