EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000016443 (Gene tree)
Gene ID: 334234
Gene Symbol: eif3c
Alias: eif3s8|fi37c04|wu:fb34a08|wu:fi37c04|zgc:66128
Full Name: eukaryotic translation initiation factor 3%2C subunit C
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 18144 bases
Position: chr12:3944229-3962372
Accession: ZDB-GENE-030131-6166
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000011344	eIF-3c_N	PF05470.12	9.7e-253	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000016791	-	3207	XM_005155999	ENSDARP00000011344	926 (aa)	XP_005156056	F1QUG5

Gene Model

Click here to download ENSDARG00000016443's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000016443's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000016443	eif3c	98	76.554	ENSG00000205609	EIF3CL	99	76.496	Homo_sapiens
ENSDARG00000016443	eif3c	98	76.387	ENSG00000184110	EIF3C	100	83.544	Homo_sapiens
ENSDARG00000016443	eif3c	100	87.594	ENSAPOG00000024092	eif3c	100	88.021	Acanthochromis_polyacanthus
ENSDARG00000016443	eif3c	98	76.061	ENSAMEG00000015454	-	99	76.253	Ailuropoda_melanoleuca
ENSDARG00000016443	eif3c	100	81.955	ENSACIG00000015082	eif3c	100	82.201	Amphilophus_citrinellus
ENSDARG00000016443	eif3c	100	88.342	ENSAOCG00000021466	eif3c	100	88.556	Amphiprion_ocellaris
ENSDARG00000016443	eif3c	100	88.342	ENSAPEG00000010521	eif3c	100	88.556	Amphiprion_percula
ENSDARG00000016443	eif3c	100	86.660	ENSATEG00000019001	eif3c	100	87.821	Anabas_testudineus
ENSDARG00000016443	eif3c	100	77.014	ENSACAG00000005937	-	100	77.014	Anolis_carolinensis
ENSDARG00000016443	eif3c	98	76.279	ENSANAG00000020640	-	99	76.471	Aotus_nancymaae
ENSDARG00000016443	eif3c	85	92.135	ENSACLG00000009347	eif3c	95	91.925	Astatotilapia_calliptera
ENSDARG00000016443	eif3c	85	90.224	ENSACLG00000009322	eif3c	92	90.224	Astatotilapia_calliptera
ENSDARG00000016443	eif3c	100	87.138	ENSAMXG00000020949	eif3c	100	88.639	Astyanax_mexicanus
ENSDARG00000016443	eif3c	98	75.708	ENSBTAG00000006543	EIF3CL	99	76.362	Bos_taurus
ENSDARG00000016443	eif3c	99	41.834	WBGene00001226	eif-3.C	98	41.737	Caenorhabditis_elegans
ENSDARG00000016443	eif3c	98	76.170	ENSCJAG00000006341	-	99	78.689	Callithrix_jacchus
ENSDARG00000016443	eif3c	98	76.170	ENSCAFG00000017143	-	99	76.362	Canis_familiaris
ENSDARG00000016443	eif3c	98	76.170	ENSCAFG00020017587	-	99	76.362	Canis_lupus_dingo
ENSDARG00000016443	eif3c	98	75.926	ENSCHIG00000024795	-	99	76.528	Capra_hircus
ENSDARG00000016443	eif3c	98	75.843	ENSTSYG00000003486	-	99	76.144	Carlito_syrichta
ENSDARG00000016443	eif3c	95	69.257	ENSCAPG00000015887	-	99	69.222	Cavia_aperea
ENSDARG00000016443	eif3c	98	75.952	ENSCPOG00000007533	-	99	76.144	Cavia_porcellus
ENSDARG00000016443	eif3c	97	65.342	ENSCCAG00000029099	-	98	64.934	Cebus_capucinus
ENSDARG00000016443	eif3c	98	72.252	ENSCCAG00000027724	-	99	71.569	Cebus_capucinus
ENSDARG00000016443	eif3c	98	75.843	ENSCCAG00000034928	-	99	75.983	Cebus_capucinus
ENSDARG00000016443	eif3c	100	75.482	ENSCATG00000032673	-	100	75.563	Cercocebus_atys
ENSDARG00000016443	eif3c	98	75.734	ENSCLAG00000011094	-	99	75.926	Chinchilla_lanigera
ENSDARG00000016443	eif3c	100	75.482	ENSCSAG00000006297	-	100	75.563	Chlorocebus_sabaeus
ENSDARG00000016443	eif3c	53	69.112	ENSCHOG00000003120	-	87	69.112	Choloepus_hoffmanni
ENSDARG00000016443	eif3c	68	85.759	ENSCPBG00000012407	-	88	77.099	Chrysemys_picta_bellii
ENSDARG00000016443	eif3c	76	56.410	ENSCSAVG00000006744	-	92	56.410	Ciona_savignyi
ENSDARG00000016443	eif3c	100	75.482	ENSCANG00000033626	-	100	75.563	Colobus_angolensis_palliatus
ENSDARG00000016443	eif3c	98	75.082	ENSCGRG00001015265	EIF3C	99	75.217	Cricetulus_griseus_chok1gshd
ENSDARG00000016443	eif3c	100	86.924	ENSCSEG00000017770	eif3c	100	86.710	Cynoglossus_semilaevis
ENSDARG00000016443	eif3c	100	86.495	ENSCVAG00000005402	eif3c	100	87.353	Cyprinodon_variegatus
ENSDARG00000016443	eif3c	98	76.170	ENSDNOG00000031497	-	99	76.362	Dasypus_novemcinctus
ENSDARG00000016443	eif3c	98	75.626	ENSDORG00000016471	Eif3c	99	75.817	Dipodomys_ordii
ENSDARG00000016443	eif3c	68	57.097	FBgn0034258	eIF3c	98	51.293	Drosophila_melanogaster
ENSDARG00000016443	eif3c	90	86.239	ENSETEG00000013527	-	91	86.239	Echinops_telfairi
ENSDARG00000016443	eif3c	98	63.850	ENSEBUG00000001629	eif3c	99	64.103	Eptatretus_burgeri
ENSDARG00000016443	eif3c	98	75.952	ENSECAG00000008746	-	99	76.092	Equus_caballus
ENSDARG00000016443	eif3c	86	76.683	ENSEEUG00000006148	-	99	76.683	Erinaceus_europaeus
ENSDARG00000016443	eif3c	62	56.370	ENSEEUG00000000726	-	62	56.370	Erinaceus_europaeus
ENSDARG00000016443	eif3c	100	87.300	ENSELUG00000022257	eif3c	92	95.530	Esox_lucius
ENSDARG00000016443	eif3c	98	76.170	ENSFCAG00000015782	-	99	76.144	Felis_catus
ENSDARG00000016443	eif3c	98	75.734	ENSFDAG00000003588	-	99	75.926	Fukomys_damarensis
ENSDARG00000016443	eif3c	100	86.339	ENSFHEG00000014154	EIF3C	100	87.073	Fundulus_heteroclitus
ENSDARG00000016443	eif3c	96	86.130	ENSGMOG00000016885	eif3c	100	86.465	Gadus_morhua
ENSDARG00000016443	eif3c	95	86.410	ENSGACG00000007652	eif3c	100	84.624	Gasterosteus_aculeatus
ENSDARG00000016443	eif3c	92	75.437	ENSGAGG00000006666	-	100	75.553	Gopherus_agassizii
ENSDARG00000016443	eif3c	98	75.410	ENSGGOG00000026919	EIF3C	99	77.185	Gorilla_gorilla
ENSDARG00000016443	eif3c	52	79.923	ENSGGOG00000022677	-	99	79.923	Gorilla_gorilla
ENSDARG00000016443	eif3c	98	75.734	ENSHGLG00000011445	EIF3C	99	75.926	Heterocephalus_glaber_female
ENSDARG00000016443	eif3c	98	75.734	ENSHGLG00100000217	EIF3C	99	75.926	Heterocephalus_glaber_male
ENSDARG00000016443	eif3c	100	86.037	ENSHCOG00000019694	eif3c	100	86.037	Hippocampus_comes
ENSDARG00000016443	eif3c	100	87.073	ENSIPUG00000016878	eif3c	100	88.034	Ictalurus_punctatus
ENSDARG00000016443	eif3c	98	75.843	ENSSTOG00000021278	-	99	76.035	Ictidomys_tridecemlineatus
ENSDARG00000016443	eif3c	98	75.000	ENSJJAG00000012722	Eif3c	99	74.891	Jaculus_jaculus
ENSDARG00000016443	eif3c	98	87.623	ENSKMAG00000021662	eif3c	100	85.911	Kryptolebias_marmoratus
ENSDARG00000016443	eif3c	100	85.730	ENSLBEG00000023370	eif3c	100	86.373	Labrus_bergylta
ENSDARG00000016443	eif3c	97	80.667	ENSLACG00000000770	eif3c	99	80.740	Latimeria_chalumnae
ENSDARG00000016443	eif3c	98	76.061	ENSLAFG00000027426	-	99	76.253	Loxodonta_africana
ENSDARG00000016443	eif3c	100	75.482	ENSMFAG00000041930	-	100	75.563	Macaca_fascicularis
ENSDARG00000016443	eif3c	100	75.482	ENSMMUG00000011798	-	100	75.563	Macaca_mulatta
ENSDARG00000016443	eif3c	100	75.482	ENSMNEG00000023915	-	100	75.563	Macaca_nemestrina
ENSDARG00000016443	eif3c	100	75.482	ENSMLEG00000027529	-	100	75.563	Mandrillus_leucophaeus
ENSDARG00000016443	eif3c	100	87.380	ENSMAMG00000012512	eif3c	100	87.487	Mastacembelus_armatus
ENSDARG00000016443	eif3c	85	90.224	ENSMZEG00005013685	eif3c	92	90.224	Maylandia_zebra
ENSDARG00000016443	eif3c	85	92.135	ENSMZEG00005013699	eif3c	95	91.925	Maylandia_zebra
ENSDARG00000016443	eif3c	98	75.190	ENSMAUG00000010621	Eif3c	99	75.326	Mesocricetus_auratus
ENSDARG00000016443	eif3c	98	76.279	ENSMICG00000036748	-	99	76.471	Microcebus_murinus
ENSDARG00000016443	eif3c	98	73.799	ENSMOCG00000004204	Eif3c	99	73.799	Microtus_ochrogaster
ENSDARG00000016443	eif3c	100	79.806	ENSMMOG00000001572	eif3c	100	80.906	Mola_mola
ENSDARG00000016443	eif3c	100	75.294	ENSMODG00000015579	-	100	75.725	Monodelphis_domestica
ENSDARG00000016443	eif3c	92	89.375	ENSMALG00000008907	eif3c	93	92.982	Monopterus_albus
ENSDARG00000016443	eif3c	98	74.646	MGP_CAROLIEiJ_G0030451	Eif3c	99	74.563	Mus_caroli
ENSDARG00000016443	eif3c	98	74.646	ENSMUSG00000030738	Eif3c	99	74.563	Mus_musculus
ENSDARG00000016443	eif3c	98	74.292	MGP_PahariEiJ_G0013661	Eif3c	99	74.345	Mus_pahari
ENSDARG00000016443	eif3c	98	74.646	MGP_SPRETEiJ_G0031565	Eif3c	99	74.563	Mus_spretus
ENSDARG00000016443	eif3c	95	76.637	ENSMPUG00000012732	-	99	76.723	Mustela_putorius_furo
ENSDARG00000016443	eif3c	98	75.408	ENSMLUG00000015558	-	99	76.061	Myotis_lucifugus
ENSDARG00000016443	eif3c	83	64.927	ENSNGAG00000010901	-	89	65.203	Nannospalax_galili
ENSDARG00000016443	eif3c	98	75.517	ENSNGAG00000007177	-	99	75.764	Nannospalax_galili
ENSDARG00000016443	eif3c	98	67.417	ENSNLEG00000001425	-	99	66.988	Nomascus_leucogenys
ENSDARG00000016443	eif3c	89	53.049	ENSMEUG00000005317	-	95	63.478	Notamacropus_eugenii
ENSDARG00000016443	eif3c	99	63.913	ENSMEUG00000009939	-	100	63.459	Notamacropus_eugenii
ENSDARG00000016443	eif3c	98	75.952	ENSOPRG00000000931	-	99	76.092	Ochotona_princeps
ENSDARG00000016443	eif3c	98	75.843	ENSODEG00000013508	-	99	76.035	Octodon_degus
ENSDARG00000016443	eif3c	67	71.176	ENSONIG00000011434	eif3c	100	71.176	Oreochromis_niloticus
ENSDARG00000016443	eif3c	100	72.399	ENSOANG00000011410	-	100	72.708	Ornithorhynchus_anatinus
ENSDARG00000016443	eif3c	98	76.061	ENSOCUG00000022489	-	99	76.253	Oryctolagus_cuniculus
ENSDARG00000016443	eif3c	97	85.889	ENSORLG00000006318	eif3c	97	85.699	Oryzias_latipes
ENSDARG00000016443	eif3c	90	95.447	ENSORLG00020015713	eif3c	100	84.648	Oryzias_latipes_hni
ENSDARG00000016443	eif3c	97	85.667	ENSORLG00015013772	eif3c	100	85.150	Oryzias_latipes_hsok
ENSDARG00000016443	eif3c	100	86.803	ENSOMEG00000020450	eif3c	100	86.910	Oryzias_melastigma
ENSDARG00000016443	eif3c	98	75.843	ENSOGAG00000012737	-	99	76.035	Otolemur_garnettii
ENSDARG00000016443	eif3c	98	75.926	ENSOARG00000002892	-	99	76.528	Ovis_aries
ENSDARG00000016443	eif3c	98	76.170	ENSPPRG00000012336	-	99	76.144	Panthera_pardus
ENSDARG00000016443	eif3c	98	76.170	ENSPTIG00000011712	-	99	76.144	Panthera_tigris_altaica
ENSDARG00000016443	eif3c	100	75.482	ENSPANG00000021151	-	100	75.563	Papio_anubis
ENSDARG00000016443	eif3c	100	88.317	ENSPKIG00000002049	eif3c	100	87.863	Paramormyrops_kingsleyae
ENSDARG00000016443	eif3c	90	94.309	ENSPMGG00000005409	eif3c	100	82.632	Periophthalmus_magnuspinnatus
ENSDARG00000016443	eif3c	98	74.864	ENSPEMG00000010899	Eif3c	99	74.891	Peromyscus_maniculatus_bairdii
ENSDARG00000016443	eif3c	100	75.080	ENSPCIG00000025206	-	100	75.510	Phascolarctos_cinereus
ENSDARG00000016443	eif3c	100	87.701	ENSPFOG00000004476	eif3c	100	87.380	Poecilia_formosa
ENSDARG00000016443	eif3c	93	90.361	ENSPLAG00000017480	eif3c	100	87.052	Poecilia_latipinna
ENSDARG00000016443	eif3c	100	87.580	ENSPMEG00000019512	eif3c	94	93.974	Poecilia_mexicana
ENSDARG00000016443	eif3c	100	81.210	ENSPREG00000023139	eif3c	100	85.735	Poecilia_reticulata
ENSDARG00000016443	eif3c	98	74.211	ENSPPYG00000007227	-	99	74.401	Pongo_abelii
ENSDARG00000016443	eif3c	65	84.027	ENSPCAG00000012710	-	99	84.027	Procavia_capensis
ENSDARG00000016443	eif3c	98	76.279	ENSPCOG00000019289	-	99	76.471	Propithecus_coquereli
ENSDARG00000016443	eif3c	98	76.061	ENSPVAG00000005804	-	99	76.253	Pteropus_vampyrus
ENSDARG00000016443	eif3c	66	77.019	ENSPNYG00000016530	eif3c	83	93.413	Pundamilia_nyererei
ENSDARG00000016443	eif3c	100	88.793	ENSPNAG00000024040	eif3c	100	89.763	Pygocentrus_nattereri
ENSDARG00000016443	eif3c	98	74.728	ENSRNOG00000018761	Eif3c	99	74.563	Rattus_norvegicus
ENSDARG00000016443	eif3c	97	75.332	ENSRBIG00000044009	-	98	75.415	Rhinopithecus_bieti
ENSDARG00000016443	eif3c	100	75.482	ENSRROG00000043626	-	100	75.563	Rhinopithecus_roxellana
ENSDARG00000016443	eif3c	74	31.047	YMR309C	-	83	31.541	Saccharomyces_cerevisiae
ENSDARG00000016443	eif3c	98	76.279	ENSSBOG00000032155	-	99	76.419	Saimiri_boliviensis_boliviensis
ENSDARG00000016443	eif3c	96	75.885	ENSSHAG00000011808	-	100	76.333	Sarcophilus_harrisii
ENSDARG00000016443	eif3c	100	86.868	ENSSFOG00015021823	eif3c	100	86.961	Scleropages_formosus
ENSDARG00000016443	eif3c	96	87.780	ENSSMAG00000016638	eif3c	97	87.668	Scophthalmus_maximus
ENSDARG00000016443	eif3c	100	88.330	ENSSDUG00000023117	eif3c	100	90.216	Seriola_dumerili
ENSDARG00000016443	eif3c	100	88.330	ENSSLDG00000009706	eif3c	100	88.651	Seriola_lalandi_dorsalis
ENSDARG00000016443	eif3c	100	75.699	ENSSPUG00000016470	-	100	76.022	Sphenodon_punctatus
ENSDARG00000016443	eif3c	100	88.021	ENSSPAG00000000426	eif3c	100	88.449	Stegastes_partitus
ENSDARG00000016443	eif3c	98	75.843	ENSSSCG00000034927	-	99	76.035	Sus_scrofa
ENSDARG00000016443	eif3c	99	84.624	ENSTRUG00000008951	eif3c	99	86.359	Takifugu_rubripes
ENSDARG00000016443	eif3c	100	82.958	ENSTNIG00000015210	eif3c	100	84.188	Tetraodon_nigroviridis
ENSDARG00000016443	eif3c	98	75.952	ENSTTRG00000005880	-	99	76.092	Tursiops_truncatus
ENSDARG00000016443	eif3c	66	84.452	ENSUAMG00000001127	-	91	92.994	Ursus_americanus
ENSDARG00000016443	eif3c	98	76.061	ENSUMAG00000010927	-	99	76.253	Ursus_maritimus
ENSDARG00000016443	eif3c	98	74.837	ENSVVUG00000025970	-	99	75.054	Vulpes_vulpes
ENSDARG00000016443	eif3c	100	76.439	ENSXETG00000002941	eif3c	100	76.175	Xenopus_tropicalis
ENSDARG00000016443	eif3c	100	87.007	ENSXMAG00000013796	eif3c	100	86.461	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001732	formation of cytoplasmic translation initiation complex	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0003743	translation initiation factor activity	21873635.	IBA	Function
GO:0003743	translation initiation factor activity	-	IEA	Function
GO:0003743	translation initiation factor activity	-	ISS	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005852	eukaryotic translation initiation factor 3 complex	21873635.	IBA	Component
GO:0005852	eukaryotic translation initiation factor 3 complex	-	IEA	Component
GO:0005852	eukaryotic translation initiation factor 3 complex	-	ISS	Component
GO:0006412	translation	-	IEA	Process
GO:0006413	translational initiation	21873635.	IBA	Process
GO:0006413	translational initiation	-	IEA	Process
GO:0006413	translational initiation	-	ISS	Process
GO:0016282	eukaryotic 43S preinitiation complex	-	IEA	Component
GO:0031369	translation initiation factor binding	21873635.	IBA	Function
GO:0031369	translation initiation factor binding	-	IEA	Function
GO:0033290	eukaryotic 48S preinitiation complex	-	IEA	Component