EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000016447 (Gene tree)
Gene ID: 327606
Gene Symbol: ythdf1
Alias: fb49c02|wu:fb49c02|wu:fi19h06|wu:fj87f09|wu:fp06c11|zgc:55657
Full Name: YTH N(6)-methyladenosine RNA binding protein 1
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 85535 bases
Position: chr8:23034718-23120252
Accession: ZDB-GENE-040426-2786
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000005746	YTH	PF04146.15	1.8e-40	1	1
ENSDARP00000153154	YTH	PF04146.15	1.8e-40	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000145684	-	557	-	-	- (aa)	-	-
ENSDART00000025171	-	4168	XM_005167004	ENSDARP00000005746	614 (aa)	XP_005167061	Q802Z0
ENSDART00000184512	-	2323	-	ENSDARP00000153154	614 (aa)	-	Q802Z0

Gene Model

Click here to download ENSDARG00000016447's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000016447's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000016447	ythdf1	95	73.070	ENSG00000149658	YTHDF1	100	70.195	Homo_sapiens
ENSDARG00000016447	ythdf1	100	80.534	ENSAPOG00000010796	YTHDF1	100	81.965	Acanthochromis_polyacanthus
ENSDARG00000016447	ythdf1	99	83.199	ENSAPOG00000004358	ythdf1	99	83.304	Acanthochromis_polyacanthus
ENSDARG00000016447	ythdf1	94	79.522	ENSACIG00000020083	YTHDF1	100	77.170	Amphilophus_citrinellus
ENSDARG00000016447	ythdf1	99	83.226	ENSAOCG00000022251	ythdf1	99	82.450	Amphiprion_ocellaris
ENSDARG00000016447	ythdf1	100	81.517	ENSAOCG00000012567	YTHDF1	100	81.643	Amphiprion_ocellaris
ENSDARG00000016447	ythdf1	99	83.226	ENSAPEG00000021878	ythdf1	99	82.391	Amphiprion_percula
ENSDARG00000016447	ythdf1	100	81.675	ENSAPEG00000008750	YTHDF1	100	81.804	Amphiprion_percula
ENSDARG00000016447	ythdf1	99	83.548	ENSATEG00000023840	ythdf1	99	82.229	Anabas_testudineus
ENSDARG00000016447	ythdf1	100	81.994	ENSATEG00000005996	YTHDF1	100	77.346	Anabas_testudineus
ENSDARG00000016447	ythdf1	95	73.980	ENSACAG00000005560	YTHDF1	100	71.567	Anolis_carolinensis
ENSDARG00000016447	ythdf1	95	72.355	ENSANAG00000034786	-	100	68.794	Aotus_nancymaae
ENSDARG00000016447	ythdf1	100	82.051	ENSACLG00000025518	YTHDF1	100	80.645	Astatotilapia_calliptera
ENSDARG00000016447	ythdf1	94	72.539	ENSBTAG00000010383	YTHDF1	100	68.650	Bos_taurus
ENSDARG00000016447	ythdf1	95	72.355	ENSCJAG00000010056	YTHDF1	100	68.650	Callithrix_jacchus
ENSDARG00000016447	ythdf1	94	71.848	ENSCHIG00000026494	YTHDF1	100	68.167	Capra_hircus
ENSDARG00000016447	ythdf1	92	72.134	ENSTSYG00000033436	YTHDF1	98	70.067	Carlito_syrichta
ENSDARG00000016447	ythdf1	95	73.038	ENSCATG00000033272	YTHDF1	100	70.684	Cercocebus_atys
ENSDARG00000016447	ythdf1	95	73.242	ENSCLAG00000005989	YTHDF1	100	70.033	Chinchilla_lanigera
ENSDARG00000016447	ythdf1	95	72.867	ENSCSAG00000016266	YTHDF1	100	70.521	Chlorocebus_sabaeus
ENSDARG00000016447	ythdf1	95	74.276	ENSCPBG00000027183	YTHDF1	100	71.683	Chrysemys_picta_bellii
ENSDARG00000016447	ythdf1	94	72.837	ENSCANG00000029082	YTHDF1	98	70.462	Colobus_angolensis_palliatus
ENSDARG00000016447	ythdf1	97	73.534	ENSCGRG00001016568	Ythdf1	100	71.173	Cricetulus_griseus_chok1gshd
ENSDARG00000016447	ythdf1	93	73.438	ENSCGRG00000009207	Ythdf1	99	71.192	Cricetulus_griseus_crigri
ENSDARG00000016447	ythdf1	94	79.346	ENSCSEG00000020623	YTHDF1	99	78.246	Cynoglossus_semilaevis
ENSDARG00000016447	ythdf1	100	81.021	ENSCVAG00000014378	YTHDF1	100	80.707	Cyprinodon_variegatus
ENSDARG00000016447	ythdf1	99	79.871	ENSCVAG00000017940	ythdf1	99	79.612	Cyprinodon_variegatus
ENSDARG00000016447	ythdf1	80	55.233	ENSETEG00000017860	-	99	56.548	Echinops_telfairi
ENSDARG00000016447	ythdf1	97	70.687	ENSEASG00005023186	YTHDF1	100	71.010	Equus_asinus_asinus
ENSDARG00000016447	ythdf1	96	70.847	ENSECAG00000019475	YTHDF1	100	70.390	Equus_caballus
ENSDARG00000016447	ythdf1	88	71.795	ENSEEUG00000007461	YTHDF1	100	70.261	Erinaceus_europaeus
ENSDARG00000016447	ythdf1	99	76.852	ENSELUG00000001906	YTHDF1	99	75.773	Esox_lucius
ENSDARG00000016447	ythdf1	99	86.538	ENSELUG00000022768	ythdf1	99	83.974	Esox_lucius
ENSDARG00000016447	ythdf1	95	73.891	ENSFALG00000010463	YTHDF1	100	71.683	Ficedula_albicollis
ENSDARG00000016447	ythdf1	100	82.006	ENSFHEG00000002540	YTHDF1	99	78.798	Fundulus_heteroclitus
ENSDARG00000016447	ythdf1	99	80.583	ENSFHEG00000023218	ythdf1	99	80.583	Fundulus_heteroclitus
ENSDARG00000016447	ythdf1	100	80.848	ENSGAFG00000021100	YTHDF1	97	90.842	Gambusia_affinis
ENSDARG00000016447	ythdf1	99	81.553	ENSGACG00000012014	ythdf1	99	82.362	Gasterosteus_aculeatus
ENSDARG00000016447	ythdf1	100	79.266	ENSGACG00000002613	YTHDF1	100	77.331	Gasterosteus_aculeatus
ENSDARG00000016447	ythdf1	95	74.446	ENSGAGG00000003007	YTHDF1	100	71.845	Gopherus_agassizii
ENSDARG00000016447	ythdf1	95	73.585	ENSGGOG00000008340	YTHDF1	100	70.358	Gorilla_gorilla
ENSDARG00000016447	ythdf1	99	82.276	ENSHBUG00000011284	ythdf1	99	81.924	Haplochromis_burtoni
ENSDARG00000016447	ythdf1	100	82.212	ENSHBUG00000004875	YTHDF1	100	80.806	Haplochromis_burtoni
ENSDARG00000016447	ythdf1	95	71.698	ENSHGLG00000006585	YTHDF1	100	70.033	Heterocephalus_glaber_female
ENSDARG00000016447	ythdf1	95	71.698	ENSHGLG00100004683	YTHDF1	100	70.033	Heterocephalus_glaber_male
ENSDARG00000016447	ythdf1	100	78.707	ENSHCOG00000011303	YTHDF1	100	79.645	Hippocampus_comes
ENSDARG00000016447	ythdf1	97	82.090	ENSHCOG00000008866	ythdf1	99	81.758	Hippocampus_comes
ENSDARG00000016447	ythdf1	100	86.538	ENSIPUG00000000425	Ythdf1	100	85.737	Ictalurus_punctatus
ENSDARG00000016447	ythdf1	93	73.310	ENSJJAG00000013589	Ythdf1	99	71.026	Jaculus_jaculus
ENSDARG00000016447	ythdf1	100	82.665	ENSKMAG00000017472	YTHDF1	100	80.159	Kryptolebias_marmoratus
ENSDARG00000016447	ythdf1	99	81.159	ENSKMAG00000005595	ythdf1	99	80.421	Kryptolebias_marmoratus
ENSDARG00000016447	ythdf1	99	82.524	ENSLBEG00000014105	ythdf1	99	82.362	Labrus_bergylta
ENSDARG00000016447	ythdf1	100	80.411	ENSLBEG00000012068	YTHDF1	100	80.323	Labrus_bergylta
ENSDARG00000016447	ythdf1	100	78.339	ENSLOCG00000005020	ythdf1	100	78.029	Lepisosteus_oculatus
ENSDARG00000016447	ythdf1	95	72.867	ENSMFAG00000042868	YTHDF1	100	70.521	Macaca_fascicularis
ENSDARG00000016447	ythdf1	95	72.867	ENSMMUG00000009227	YTHDF1	100	70.521	Macaca_mulatta
ENSDARG00000016447	ythdf1	95	72.867	ENSMNEG00000030851	YTHDF1	100	70.521	Macaca_nemestrina
ENSDARG00000016447	ythdf1	95	73.379	ENSMLEG00000009252	YTHDF1	99	70.695	Mandrillus_leucophaeus
ENSDARG00000016447	ythdf1	100	80.945	ENSMAMG00000011072	YTHDF1	100	81.029	Mastacembelus_armatus
ENSDARG00000016447	ythdf1	99	81.099	ENSMAMG00000024255	ythdf1	99	79.968	Mastacembelus_armatus
ENSDARG00000016447	ythdf1	100	82.212	ENSMZEG00005023596	YTHDF1	100	80.806	Maylandia_zebra
ENSDARG00000016447	ythdf1	99	82.468	ENSMZEG00005026397	ythdf1	99	83.442	Maylandia_zebra
ENSDARG00000016447	ythdf1	95	73.208	ENSMAUG00000017660	Ythdf1	100	71.010	Mesocricetus_auratus
ENSDARG00000016447	ythdf1	95	72.260	ENSMICG00000032266	YTHDF1	100	70.358	Microcebus_murinus
ENSDARG00000016447	ythdf1	95	73.208	ENSMOCG00000013573	Ythdf1	100	71.010	Microtus_ochrogaster
ENSDARG00000016447	ythdf1	94	80.546	ENSMMOG00000017500	ythdf1	97	81.469	Mola_mola
ENSDARG00000016447	ythdf1	87	73.546	ENSMODG00000016842	YTHDF1	100	71.277	Monodelphis_domestica
ENSDARG00000016447	ythdf1	99	80.614	ENSMALG00000015672	ythdf1	99	80.421	Monopterus_albus
ENSDARG00000016447	ythdf1	100	79.278	ENSMALG00000022209	YTHDF1	100	79.299	Monopterus_albus
ENSDARG00000016447	ythdf1	95	72.867	MGP_CAROLIEiJ_G0024790	Ythdf1	100	70.684	Mus_caroli
ENSDARG00000016447	ythdf1	95	72.867	ENSMUSG00000038848	Ythdf1	100	70.684	Mus_musculus
ENSDARG00000016447	ythdf1	95	72.867	MGP_PahariEiJ_G0026237	Ythdf1	100	70.684	Mus_pahari
ENSDARG00000016447	ythdf1	95	72.867	MGP_SPRETEiJ_G0025715	Ythdf1	100	70.684	Mus_spretus
ENSDARG00000016447	ythdf1	95	74.232	ENSNGAG00000000334	Ythdf1	100	71.173	Nannospalax_galili
ENSDARG00000016447	ythdf1	94	81.324	ENSNBRG00000015321	YTHDF1	99	78.974	Neolamprologus_brichardi
ENSDARG00000016447	ythdf1	94	83.163	ENSNBRG00000008213	ythdf1	98	83.500	Neolamprologus_brichardi
ENSDARG00000016447	ythdf1	93	66.200	ENSOPRG00000001758	-	99	64.522	Ochotona_princeps
ENSDARG00000016447	ythdf1	96	68.143	ENSODEG00000004380	-	100	69.870	Octodon_degus
ENSDARG00000016447	ythdf1	94	56.186	ENSODEG00000000074	-	100	54.886	Octodon_degus
ENSDARG00000016447	ythdf1	94	81.709	ENSONIG00000016799	ythdf1	98	83.627	Oreochromis_niloticus
ENSDARG00000016447	ythdf1	99	80.129	ENSORLG00000014665	YTHDF1	99	78.606	Oryzias_latipes
ENSDARG00000016447	ythdf1	100	80.937	ENSORLG00000009739	YTHDF1	100	80.096	Oryzias_latipes
ENSDARG00000016447	ythdf1	100	81.463	ENSORLG00020001332	YTHDF1	100	80.192	Oryzias_latipes_hni
ENSDARG00000016447	ythdf1	99	80.744	ENSORLG00020000307	ythdf1	99	79.221	Oryzias_latipes_hni
ENSDARG00000016447	ythdf1	100	80.614	ENSORLG00015018321	YTHDF1	100	79.777	Oryzias_latipes_hsok
ENSDARG00000016447	ythdf1	99	80.583	ENSORLG00015006302	ythdf1	99	79.058	Oryzias_latipes_hsok
ENSDARG00000016447	ythdf1	99	81.199	ENSOMEG00000002941	YTHDF1	99	79.200	Oryzias_melastigma
ENSDARG00000016447	ythdf1	100	81.240	ENSOMEG00000011843	YTHDF1	100	79.777	Oryzias_melastigma
ENSDARG00000016447	ythdf1	95	73.585	ENSPPAG00000023277	YTHDF1	100	70.462	Pan_paniscus
ENSDARG00000016447	ythdf1	77	81.696	ENSPTIG00000017355	YTHDF1	96	77.559	Panthera_tigris_altaica
ENSDARG00000016447	ythdf1	95	73.585	ENSPTRG00000013730	YTHDF1	100	70.358	Pan_troglodytes
ENSDARG00000016447	ythdf1	95	72.867	ENSPANG00000021472	YTHDF1	100	70.521	Papio_anubis
ENSDARG00000016447	ythdf1	96	74.281	ENSPKIG00000005026	YTHDF1	98	71.597	Paramormyrops_kingsleyae
ENSDARG00000016447	ythdf1	92	80.308	ENSPMGG00000009101	YTHDF1	99	79.264	Periophthalmus_magnuspinnatus
ENSDARG00000016447	ythdf1	92	80.911	ENSPMGG00000015328	ythdf1	97	79.066	Periophthalmus_magnuspinnatus
ENSDARG00000016447	ythdf1	94	73.702	ENSPEMG00000020199	Ythdf1	99	72.696	Peromyscus_maniculatus_bairdii
ENSDARG00000016447	ythdf1	97	74.916	ENSPCIG00000017170	YTHDF1	100	70.702	Phascolarctos_cinereus
ENSDARG00000016447	ythdf1	99	80.713	ENSPFOG00000005405	ythdf1	99	80.195	Poecilia_formosa
ENSDARG00000016447	ythdf1	100	79.875	ENSPLAG00000006298	YTHDF1	100	80.806	Poecilia_latipinna
ENSDARG00000016447	ythdf1	99	80.713	ENSPLAG00000006653	ythdf1	99	80.405	Poecilia_latipinna
ENSDARG00000016447	ythdf1	100	79.875	ENSPMEG00000020969	-	99	88.621	Poecilia_mexicana
ENSDARG00000016447	ythdf1	99	79.903	ENSPMEG00000023753	ythdf1	99	80.565	Poecilia_mexicana
ENSDARG00000016447	ythdf1	99	80.844	ENSPREG00000002173	ythdf1	99	81.032	Poecilia_reticulata
ENSDARG00000016447	ythdf1	97	79.487	ENSPREG00000017662	YTHDF1	98	81.592	Poecilia_reticulata
ENSDARG00000016447	ythdf1	78	86.802	ENSPPYG00000011226	YTHDF1	99	85.514	Pongo_abelii
ENSDARG00000016447	ythdf1	87	70.205	ENSPCAG00000002452	YTHDF1	100	69.161	Procavia_capensis
ENSDARG00000016447	ythdf1	95	72.556	ENSPCOG00000025969	YTHDF1	100	70.684	Propithecus_coquereli
ENSDARG00000016447	ythdf1	96	68.930	ENSPVAG00000017568	YTHDF1	99	68.251	Pteropus_vampyrus
ENSDARG00000016447	ythdf1	100	82.212	ENSPNYG00000002266	YTHDF1	100	80.806	Pundamilia_nyererei
ENSDARG00000016447	ythdf1	99	82.276	ENSPNYG00000014007	ythdf1	99	83.277	Pundamilia_nyererei
ENSDARG00000016447	ythdf1	100	95.114	ENSPNAG00000012447	ythdf1	100	95.114	Pygocentrus_nattereri
ENSDARG00000016447	ythdf1	95	72.696	ENSRNOG00000027015	Ythdf1	100	70.847	Rattus_norvegicus
ENSDARG00000016447	ythdf1	95	72.355	ENSRBIG00000044959	YTHDF1	100	70.033	Rhinopithecus_bieti
ENSDARG00000016447	ythdf1	95	72.355	ENSRROG00000033014	YTHDF1	100	70.033	Rhinopithecus_roxellana
ENSDARG00000016447	ythdf1	92	71.353	ENSSBOG00000027278	YTHDF1	100	66.434	Saimiri_boliviensis_boliviensis
ENSDARG00000016447	ythdf1	100	79.708	ENSSFOG00015000284	ythdf1	100	78.226	Scleropages_formosus
ENSDARG00000016447	ythdf1	68	93.631	ENSSMAG00000013715	ythdf1	95	83.333	Scophthalmus_maximus
ENSDARG00000016447	ythdf1	99	81.046	ENSSMAG00000007635	YTHDF1	98	79.344	Scophthalmus_maximus
ENSDARG00000016447	ythdf1	99	83.414	ENSSDUG00000000435	ythdf1	99	83.819	Seriola_dumerili
ENSDARG00000016447	ythdf1	93	80.522	ENSSDUG00000015823	YTHDF1	50	89.964	Seriola_dumerili
ENSDARG00000016447	ythdf1	100	78.053	ENSSLDG00000001054	YTHDF1	93	90.094	Seriola_lalandi_dorsalis
ENSDARG00000016447	ythdf1	99	83.819	ENSSLDG00000024948	ythdf1	99	83.902	Seriola_lalandi_dorsalis
ENSDARG00000016447	ythdf1	100	81.201	ENSSPAG00000003666	YTHDF1	100	80.868	Stegastes_partitus
ENSDARG00000016447	ythdf1	99	82.343	ENSSPAG00000014989	ythdf1	99	81.190	Stegastes_partitus
ENSDARG00000016447	ythdf1	94	80.301	ENSTRUG00000005049	YTHDF1	99	79.470	Takifugu_rubripes
ENSDARG00000016447	ythdf1	94	82.823	ENSTRUG00000004288	ythdf1	99	81.229	Takifugu_rubripes
ENSDARG00000016447	ythdf1	94	76.752	ENSTNIG00000012490	ythdf1	99	76.500	Tetraodon_nigroviridis
ENSDARG00000016447	ythdf1	94	78.045	ENSTNIG00000003975	YTHDF1	51	84.589	Tetraodon_nigroviridis
ENSDARG00000016447	ythdf1	97	80.161	ENSXCOG00000008115	YTHDF1	99	80.265	Xiphophorus_couchianus
ENSDARG00000016447	ythdf1	94	80.656	ENSXCOG00000002490	ythdf1	94	81.043	Xiphophorus_couchianus
ENSDARG00000016447	ythdf1	99	79.675	ENSXMAG00000008525	ythdf1	99	79.823	Xiphophorus_maculatus
ENSDARG00000016447	ythdf1	100	80.691	ENSXMAG00000015644	YTHDF1	100	80.806	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process