EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000016484 (Gene tree)
Gene ID: 613144
Gene Symbol: dkc1
Alias: fc87a02|fi24a05|fv62a07|wu:fa28f10|wu:fc87a02|wu:fi24a05|wu:fv62a07|zgc:110395
Full Name: dyskeratosis congenita 1%2C dyskerin
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 14462 bases
Position: chr21:43702010-43716471
Accession: ZDB-GENE-031118-120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000007628	TruB_N	PF01509.18	1.8e-19	1	1
ENSDARP00000007628	PUA	PF01472.20	3.8e-17	1	1
ENSDARP00000007628	DKCLD	PF08068.12	4.1e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000017176	-	1906	-	ENSDARP00000007628	506 (aa)	-	F1Q749
ENSDART00000126190	-	850	-	ENSDARP00000105779	56 (aa)	-	E7F423

Gene Model

Click here to download ENSDARG00000016484's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000016484's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000016484	dkc1	79	86.181	ENSG00000130826	DKC1	99	87.317	Homo_sapiens
ENSDARG00000016484	dkc1	99	83.465	ENSAPOG00000007799	dkc1	85	89.862	Acanthochromis_polyacanthus
ENSDARG00000016484	dkc1	90	78.808	ENSAMEG00000002776	DKC1	80	84.767	Ailuropoda_melanoleuca
ENSDARG00000016484	dkc1	93	83.227	ENSACIG00000022614	dkc1	83	93.216	Amphilophus_citrinellus
ENSDARG00000016484	dkc1	99	82.840	ENSAOCG00000013159	dkc1	84	91.041	Amphiprion_ocellaris
ENSDARG00000016484	dkc1	99	82.840	ENSAPEG00000002284	dkc1	84	91.484	Amphiprion_percula
ENSDARG00000016484	dkc1	84	86.775	ENSATEG00000013682	dkc1	83	87.234	Anabas_testudineus
ENSDARG00000016484	dkc1	87	81.514	ENSACAG00000015600	DKC1	70	87.407	Anolis_carolinensis
ENSDARG00000016484	dkc1	87	80.317	ENSANAG00000022732	DKC1	83	82.284	Aotus_nancymaae
ENSDARG00000016484	dkc1	79	92.481	ENSACLG00000015605	dkc1	81	92.714	Astatotilapia_calliptera
ENSDARG00000016484	dkc1	89	91.228	ENSAMXG00000017108	dkc1	82	93.269	Astyanax_mexicanus
ENSDARG00000016484	dkc1	85	80.769	ENSBTAG00000013045	DKC1	80	85.149	Bos_taurus
ENSDARG00000016484	dkc1	81	64.548	WBGene00010478	K01G5.5	91	65.261	Caenorhabditis_elegans
ENSDARG00000016484	dkc1	84	81.422	ENSCJAG00000004210	DKC1	83	81.818	Callithrix_jacchus
ENSDARG00000016484	dkc1	78	76.515	ENSCAFG00000009311	-	78	76.515	Canis_familiaris
ENSDARG00000016484	dkc1	90	77.412	ENSCAFG00000019620	-	80	83.575	Canis_familiaris
ENSDARG00000016484	dkc1	83	71.462	ENSCAFG00020009379	-	75	75.505	Canis_lupus_dingo
ENSDARG00000016484	dkc1	90	77.412	ENSCAFG00020008918	-	80	83.575	Canis_lupus_dingo
ENSDARG00000016484	dkc1	85	80.995	ENSCHIG00000017392	DKC1	80	85.396	Capra_hircus
ENSDARG00000016484	dkc1	91	77.706	ENSTSYG00000007681	DKC1	79	84.466	Carlito_syrichta
ENSDARG00000016484	dkc1	74	86.327	ENSCAPG00000003342	DKC1	84	86.992	Cavia_aperea
ENSDARG00000016484	dkc1	85	80.726	ENSCPOG00000008825	DKC1	78	86.466	Cavia_porcellus
ENSDARG00000016484	dkc1	87	70.748	ENSCCAG00000027418	DKC1	76	75.312	Cebus_capucinus
ENSDARG00000016484	dkc1	85	80.045	ENSCATG00000033602	DKC1	79	85.185	Cercocebus_atys
ENSDARG00000016484	dkc1	84	81.591	ENSCLAG00000000720	DKC1	80	85.432	Chinchilla_lanigera
ENSDARG00000016484	dkc1	85	80.045	ENSCSAG00000006706	DKC1	79	85.185	Chlorocebus_sabaeus
ENSDARG00000016484	dkc1	87	81.027	ENSCPBG00000005858	DKC1	88	85.888	Chrysemys_picta_bellii
ENSDARG00000016484	dkc1	78	81.772	ENSCING00000004599	-	77	81.203	Ciona_intestinalis
ENSDARG00000016484	dkc1	87	73.696	ENSCSAVG00000010047	-	92	78.780	Ciona_savignyi
ENSDARG00000016484	dkc1	85	80.045	ENSCANG00000027987	DKC1	79	85.185	Colobus_angolensis_palliatus
ENSDARG00000016484	dkc1	89	78.795	ENSCGRG00001014574	-	78	85.965	Cricetulus_griseus_chok1gshd
ENSDARG00000016484	dkc1	75	66.931	ENSCGRG00001016789	-	79	67.751	Cricetulus_griseus_chok1gshd
ENSDARG00000016484	dkc1	89	78.795	ENSCGRG00000016075	-	78	85.965	Cricetulus_griseus_crigri
ENSDARG00000016484	dkc1	75	66.931	ENSCGRG00000014809	-	77	67.751	Cricetulus_griseus_crigri
ENSDARG00000016484	dkc1	93	81.356	ENSCSEG00000012633	dkc1	87	87.981	Cynoglossus_semilaevis
ENSDARG00000016484	dkc1	84	89.671	ENSCVAG00000010155	dkc1	81	90.865	Cyprinodon_variegatus
ENSDARG00000016484	dkc1	85	81.633	ENSDNOG00000004218	DKC1	78	86.534	Dasypus_novemcinctus
ENSDARG00000016484	dkc1	55	71.685	ENSDORG00000013566	-	92	71.685	Dipodomys_ordii
ENSDARG00000016484	dkc1	88	68.421	FBgn0259937	Nop60B	88	69.500	Drosophila_melanogaster
ENSDARG00000016484	dkc1	79	85.176	ENSETEG00000016095	DKC1	81	85.176	Echinops_telfairi
ENSDARG00000016484	dkc1	65	79.635	ENSEBUG00000015962	dkc1	98	82.818	Eptatretus_burgeri
ENSDARG00000016484	dkc1	81	84.019	ENSEASG00005007484	DKC1	77	85.965	Equus_asinus_asinus
ENSDARG00000016484	dkc1	88	78.492	ENSECAG00000023524	DKC1	77	85.965	Equus_caballus
ENSDARG00000016484	dkc1	80	82.578	ENSEEUG00000003323	DKC1	99	83.055	Erinaceus_europaeus
ENSDARG00000016484	dkc1	90	88.403	ENSELUG00000014538	dkc1	82	92.548	Esox_lucius
ENSDARG00000016484	dkc1	82	83.810	ENSFCAG00000006577	DKC1	79	85.536	Felis_catus
ENSDARG00000016484	dkc1	84	82.540	ENSFALG00000011496	DKC1	82	83.295	Ficedula_albicollis
ENSDARG00000016484	dkc1	85	81.524	ENSFDAG00000002516	DKC1	80	85.930	Fukomys_damarensis
ENSDARG00000016484	dkc1	87	87.982	ENSFHEG00000004627	dkc1	86	88.889	Fundulus_heteroclitus
ENSDARG00000016484	dkc1	77	90.026	ENSGMOG00000017277	dkc1	100	90.026	Gadus_morhua
ENSDARG00000016484	dkc1	84	83.871	ENSGALG00000005054	DKC1	82	84.235	Gallus_gallus
ENSDARG00000016484	dkc1	87	88.435	ENSGAFG00000011486	dkc1	74	89.352	Gambusia_affinis
ENSDARG00000016484	dkc1	79	93.216	ENSGACG00000004373	dkc1	96	93.921	Gasterosteus_aculeatus
ENSDARG00000016484	dkc1	87	81.960	ENSGAGG00000011330	DKC1	82	84.397	Gopherus_agassizii
ENSDARG00000016484	dkc1	85	80.045	ENSGGOG00000001045	DKC1	79	85.185	Gorilla_gorilla
ENSDARG00000016484	dkc1	97	84.146	ENSHBUG00000012436	dkc1	87	88.710	Haplochromis_burtoni
ENSDARG00000016484	dkc1	79	85.714	ENSHGLG00000000649	DKC1	77	85.714	Heterocephalus_glaber_female
ENSDARG00000016484	dkc1	79	85.714	ENSHGLG00100001153	DKC1	78	85.714	Heterocephalus_glaber_male
ENSDARG00000016484	dkc1	92	81.663	ENSHCOG00000021099	dkc1	83	88.702	Hippocampus_comes
ENSDARG00000016484	dkc1	88	89.648	ENSIPUG00000010309	dkc1	82	92.000	Ictalurus_punctatus
ENSDARG00000016484	dkc1	85	74.134	ENSSTOG00000020149	-	83	75.179	Ictidomys_tridecemlineatus
ENSDARG00000016484	dkc1	80	74.010	ENSSTOG00000011904	-	74	74.010	Ictidomys_tridecemlineatus
ENSDARG00000016484	dkc1	85	79.730	ENSSTOG00000001074	-	82	85.536	Ictidomys_tridecemlineatus
ENSDARG00000016484	dkc1	55	72.563	ENSJJAG00000010086	-	92	72.563	Jaculus_jaculus
ENSDARG00000016484	dkc1	87	85.227	ENSKMAG00000008010	dkc1	87	85.648	Kryptolebias_marmoratus
ENSDARG00000016484	dkc1	83	89.362	ENSLBEG00000019122	dkc1	89	88.710	Labrus_bergylta
ENSDARG00000016484	dkc1	79	87.940	ENSLACG00000014025	DKC1	91	87.940	Latimeria_chalumnae
ENSDARG00000016484	dkc1	89	86.093	ENSLOCG00000013713	dkc1	85	90.887	Lepisosteus_oculatus
ENSDARG00000016484	dkc1	79	85.714	ENSLAFG00000000221	DKC1	79	85.185	Loxodonta_africana
ENSDARG00000016484	dkc1	85	80.045	ENSMFAG00000032398	DKC1	68	85.185	Macaca_fascicularis
ENSDARG00000016484	dkc1	85	80.045	ENSMMUG00000005768	DKC1	79	85.185	Macaca_mulatta
ENSDARG00000016484	dkc1	85	80.045	ENSMNEG00000034503	DKC1	79	85.185	Macaca_nemestrina
ENSDARG00000016484	dkc1	85	80.045	ENSMLEG00000034422	DKC1	79	85.185	Mandrillus_leucophaeus
ENSDARG00000016484	dkc1	80	93.596	ENSMAMG00000005427	dkc1	90	93.766	Mastacembelus_armatus
ENSDARG00000016484	dkc1	97	84.350	ENSMZEG00005014503	dkc1	87	88.940	Maylandia_zebra
ENSDARG00000016484	dkc1	76	84.810	ENSMGAG00000009238	DKC1	84	85.090	Meleagris_gallopavo
ENSDARG00000016484	dkc1	55	70.968	ENSMAUG00000016454	-	92	70.968	Mesocricetus_auratus
ENSDARG00000016484	dkc1	79	85.464	ENSMICG00000038751	-	80	85.037	Microcebus_murinus
ENSDARG00000016484	dkc1	72	78.904	ENSMICG00000002818	-	99	76.374	Microcebus_murinus
ENSDARG00000016484	dkc1	55	68.100	ENSMOCG00000001169	-	92	68.100	Microtus_ochrogaster
ENSDARG00000016484	dkc1	81	91.220	ENSMMOG00000020348	dkc1	89	91.443	Mola_mola
ENSDARG00000016484	dkc1	92	84.549	ENSMALG00000009454	dkc1	82	91.127	Monopterus_albus
ENSDARG00000016484	dkc1	78	74.752	MGP_CAROLIEiJ_G0033191	Dkc1	85	84.000	Mus_caroli
ENSDARG00000016484	dkc1	85	79.638	ENSMUSG00000031403	Dkc1	78	85.965	Mus_musculus
ENSDARG00000016484	dkc1	79	85.464	MGP_PahariEiJ_G0031735	Dkc1	78	85.464	Mus_pahari
ENSDARG00000016484	dkc1	85	79.638	MGP_SPRETEiJ_G0034351	Dkc1	78	85.965	Mus_spretus
ENSDARG00000016484	dkc1	89	78.509	ENSMPUG00000016136	DKC1	76	83.738	Mustela_putorius_furo
ENSDARG00000016484	dkc1	79	82.707	ENSMLUG00000011918	DKC1	76	82.707	Myotis_lucifugus
ENSDARG00000016484	dkc1	55	71.685	ENSNGAG00000015724	-	92	71.685	Nannospalax_galili
ENSDARG00000016484	dkc1	85	86.697	ENSNBRG00000005638	dkc1	83	90.976	Neolamprologus_brichardi
ENSDARG00000016484	dkc1	85	80.272	ENSNLEG00000014323	DKC1	83	81.818	Nomascus_leucogenys
ENSDARG00000016484	dkc1	80	81.235	ENSMEUG00000001066	DKC1	94	77.209	Notamacropus_eugenii
ENSDARG00000016484	dkc1	69	79.143	ENSOPRG00000005248	DKC1	70	79.143	Ochotona_princeps
ENSDARG00000016484	dkc1	55	71.685	ENSODEG00000000549	-	92	71.685	Octodon_degus
ENSDARG00000016484	dkc1	79	86.967	ENSODEG00000011816	-	79	86.139	Octodon_degus
ENSDARG00000016484	dkc1	97	82.688	ENSONIG00000013889	dkc1	87	89.401	Oreochromis_niloticus
ENSDARG00000016484	dkc1	55	61.667	ENSOANG00000022295	-	62	75.446	Ornithorhynchus_anatinus
ENSDARG00000016484	dkc1	82	83.568	ENSOANG00000008713	-	81	89.059	Ornithorhynchus_anatinus
ENSDARG00000016484	dkc1	91	77.124	ENSOCUG00000012646	DKC1	78	85.930	Oryctolagus_cuniculus
ENSDARG00000016484	dkc1	83	87.354	ENSORLG00000018748	dkc1	78	91.139	Oryzias_latipes
ENSDARG00000016484	dkc1	87	86.425	ENSOMEG00000005786	dkc1	83	88.382	Oryzias_melastigma
ENSDARG00000016484	dkc1	79	86.717	ENSOGAG00000003399	DKC1	77	85.679	Otolemur_garnettii
ENSDARG00000016484	dkc1	85	81.222	ENSOARG00000003047	DKC1	80	85.644	Ovis_aries
ENSDARG00000016484	dkc1	79	86.216	ENSPPAG00000023820	DKC1	79	85.185	Pan_paniscus
ENSDARG00000016484	dkc1	82	83.810	ENSPPRG00000009104	DKC1	79	85.536	Panthera_pardus
ENSDARG00000016484	dkc1	79	85.965	ENSPTIG00000017469	DKC1	81	85.965	Panthera_tigris_altaica
ENSDARG00000016484	dkc1	85	80.045	ENSPTRG00000022449	DKC1	79	85.185	Pan_troglodytes
ENSDARG00000016484	dkc1	94	74.538	ENSPTRG00000043416	-	69	85.185	Pan_troglodytes
ENSDARG00000016484	dkc1	85	80.045	ENSPANG00000011978	DKC1	79	85.185	Papio_anubis
ENSDARG00000016484	dkc1	84	89.720	ENSPKIG00000008443	dkc1	84	94.177	Paramormyrops_kingsleyae
ENSDARG00000016484	dkc1	71	88.827	ENSPSIG00000013765	DKC1	86	88.827	Pelodiscus_sinensis
ENSDARG00000016484	dkc1	78	88.131	ENSPMGG00000004097	dkc1	73	87.940	Periophthalmus_magnuspinnatus
ENSDARG00000016484	dkc1	72	84.530	ENSPEMG00000013348	Dkc1	74	84.932	Peromyscus_maniculatus_bairdii
ENSDARG00000016484	dkc1	80	85.185	ENSPCIG00000016706	DKC1	68	85.185	Phascolarctos_cinereus
ENSDARG00000016484	dkc1	87	88.662	ENSPFOG00000018653	dkc1	86	89.815	Poecilia_formosa
ENSDARG00000016484	dkc1	87	88.662	ENSPLAG00000003272	dkc1	78	89.815	Poecilia_latipinna
ENSDARG00000016484	dkc1	87	88.662	ENSPMEG00000010413	dkc1	86	89.815	Poecilia_mexicana
ENSDARG00000016484	dkc1	87	88.662	ENSPREG00000004100	dkc1	79	90.640	Poecilia_reticulata
ENSDARG00000016484	dkc1	85	80.045	ENSPPYG00000020892	DKC1	79	85.396	Pongo_abelii
ENSDARG00000016484	dkc1	72	87.328	ENSPCAG00000015034	DKC1	71	87.328	Procavia_capensis
ENSDARG00000016484	dkc1	79	85.714	ENSPCOG00000026874	DKC1	78	85.714	Propithecus_coquereli
ENSDARG00000016484	dkc1	84	81.352	ENSPVAG00000009222	DKC1	80	85.464	Pteropus_vampyrus
ENSDARG00000016484	dkc1	87	86.105	ENSPNYG00000020063	dkc1	79	92.714	Pundamilia_nyererei
ENSDARG00000016484	dkc1	86	89.294	ENSPNAG00000005780	dkc1	80	93.300	Pygocentrus_nattereri
ENSDARG00000016484	dkc1	84	77.169	ENSRNOG00000055562	Dkc1	84	78.140	Rattus_norvegicus
ENSDARG00000016484	dkc1	85	80.045	ENSRBIG00000028457	DKC1	68	85.185	Rhinopithecus_bieti
ENSDARG00000016484	dkc1	85	80.045	ENSRROG00000044780	DKC1	79	85.185	Rhinopithecus_roxellana
ENSDARG00000016484	dkc1	76	72.063	YLR175W	-	79	72.063	Saccharomyces_cerevisiae
ENSDARG00000016484	dkc1	87	80.045	ENSSBOG00000033746	DKC1	77	86.216	Saimiri_boliviensis_boliviensis
ENSDARG00000016484	dkc1	84	82.028	ENSSHAG00000002463	DKC1	85	85.432	Sarcophilus_harrisii
ENSDARG00000016484	dkc1	89	87.609	ENSSFOG00015009585	dkc1	83	90.780	Scleropages_formosus
ENSDARG00000016484	dkc1	87	89.165	ENSSMAG00000002552	dkc1	85	89.838	Scophthalmus_maximus
ENSDARG00000016484	dkc1	95	84.058	ENSSDUG00000009963	dkc1	86	89.631	Seriola_dumerili
ENSDARG00000016484	dkc1	92	83.974	ENSSLDG00000019342	dkc1	83	92.965	Seriola_lalandi_dorsalis
ENSDARG00000016484	dkc1	79	81.955	ENSSARG00000001822	DKC1	82	80.000	Sorex_araneus
ENSDARG00000016484	dkc1	83	82.816	ENSSPUG00000018907	DKC1	77	85.049	Sphenodon_punctatus
ENSDARG00000016484	dkc1	83	89.786	ENSSPAG00000002585	dkc1	78	90.557	Stegastes_partitus
ENSDARG00000016484	dkc1	97	74.490	ENSSSCG00000012823	DKC1	85	84.466	Sus_scrofa
ENSDARG00000016484	dkc1	80	83.251	ENSTGUG00000006781	DKC1	87	86.005	Taeniopygia_guttata
ENSDARG00000016484	dkc1	91	85.000	ENSTRUG00000004413	dkc1	83	91.019	Takifugu_rubripes
ENSDARG00000016484	dkc1	84	71.461	ENSTNIG00000002582	dkc1	83	72.365	Tetraodon_nigroviridis
ENSDARG00000016484	dkc1	53	86.296	ENSTBEG00000011262	DKC1	83	80.333	Tupaia_belangeri
ENSDARG00000016484	dkc1	55	87.004	ENSTTRG00000008089	DKC1	55	87.004	Tursiops_truncatus
ENSDARG00000016484	dkc1	89	78.571	ENSUAMG00000022721	DKC1	87	83.738	Ursus_americanus
ENSDARG00000016484	dkc1	89	78.125	ENSUMAG00000016899	DKC1	92	87.566	Ursus_maritimus
ENSDARG00000016484	dkc1	90	76.242	ENSVVUG00000020734	-	73	82.185	Vulpes_vulpes
ENSDARG00000016484	dkc1	83	66.897	ENSVVUG00000021671	-	75	70.000	Vulpes_vulpes
ENSDARG00000016484	dkc1	86	85.455	ENSXETG00000032517	DKC1	82	89.051	Xenopus_tropicalis
ENSDARG00000016484	dkc1	86	85.747	ENSXCOG00000005498	dkc1	85	91.709	Xiphophorus_couchianus
ENSDARG00000016484	dkc1	87	87.982	ENSXMAG00000004919	dkc1	87	88.889	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000495	box H/ACA snoRNA 3'-end processing	21873635.	IBA	Process
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0006364	rRNA processing	22299032.	IMP	Process
GO:0006396	RNA processing	-	IEA	Process
GO:0009451	RNA modification	-	IEA	Process
GO:0009982	pseudouridine synthase activity	21873635.	IBA	Function
GO:0009982	pseudouridine synthase activity	-	IEA	Function
GO:0031118	rRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0031120	snRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0031429	box H/ACA snoRNP complex	21873635.	IBA	Component
GO:0060216	definitive hemopoiesis	22299032.	IGI	Process
GO:0060216	definitive hemopoiesis	22299032.	IMP	Process
GO:1990481	mRNA pseudouridine synthesis	21873635.	IBA	Process