EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000016516 (Gene tree)
Gene ID: 503767
Gene Symbol: rbm8a
Alias: fb34f03|wu:fb34f03|zgc:110525
Full Name: RNA binding motif protein 8A
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 7903 bases
Position: chr16:45922175-45930077
Accession: ZDB-GENE-050306-51
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000026575	RRM_1	PF00076.22	1.3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000018253	-	937	-	ENSDARP00000026575	174 (aa)	-	Q5D018

Gene Model

Click here to download ENSDARG00000016516's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG
dre03015	mRNA surveillance pathway	KEGG
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000016516's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000016516	rbm8a	61	32.432	ENSDARG00000040732	elavl2	68	33.784
ENSDARG00000016516	rbm8a	77	31.395	ENSDARG00000101744	elavl1b	74	31.250
ENSDARG00000016516	rbm8a	53	30.120	ENSDARG00000038695	elavl1a	52	30.120

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000016516	rbm8a	87	93.377	ENSG00000265241	RBM8A	89	93.548	Homo_sapiens
ENSDARG00000016516	rbm8a	91	95.570	ENSAPOG00000009727	rbm8a	89	96.129	Acanthochromis_polyacanthus
ENSDARG00000016516	rbm8a	87	91.558	ENSAMEG00000017623	RBM8A	89	91.772	Ailuropoda_melanoleuca
ENSDARG00000016516	rbm8a	92	96.250	ENSACIG00000017678	rbm8a	100	96.250	Amphilophus_citrinellus
ENSDARG00000016516	rbm8a	91	95.570	ENSAOCG00000023887	rbm8a	75	96.129	Amphiprion_ocellaris
ENSDARG00000016516	rbm8a	91	95.570	ENSAPEG00000022847	rbm8a	75	96.129	Amphiprion_percula
ENSDARG00000016516	rbm8a	91	95.570	ENSATEG00000005630	rbm8a	89	96.129	Anabas_testudineus
ENSDARG00000016516	rbm8a	87	93.377	ENSANAG00000004525	RBM8A	89	93.548	Aotus_nancymaae
ENSDARG00000016516	rbm8a	91	95.570	ENSACLG00000009627	rbm8a	89	96.129	Astatotilapia_calliptera
ENSDARG00000016516	rbm8a	100	96.552	ENSAMXG00000040754	rbm8a	100	96.552	Astyanax_mexicanus
ENSDARG00000016516	rbm8a	81	53.846	WBGene00004387	rnp-4	83	60.331	Caenorhabditis_elegans
ENSDARG00000016516	rbm8a	87	93.377	ENSCJAG00000046869	RBM8A	89	93.548	Callithrix_jacchus
ENSDARG00000016516	rbm8a	87	93.377	ENSCAFG00000023172	RBM8A	89	93.548	Canis_familiaris
ENSDARG00000016516	rbm8a	87	93.377	ENSCAFG00020019945	RBM8A	89	93.548	Canis_lupus_dingo
ENSDARG00000016516	rbm8a	87	93.377	ENSCHIG00000012114	RBM8A	89	93.548	Capra_hircus
ENSDARG00000016516	rbm8a	87	93.377	ENSTSYG00000028809	RBM8A	89	93.548	Carlito_syrichta
ENSDARG00000016516	rbm8a	64	91.964	ENSCAPG00000014086	RBM8A	86	93.396	Cavia_aperea
ENSDARG00000016516	rbm8a	91	93.038	ENSCPOG00000022453	RBM8A	92	93.548	Cavia_porcellus
ENSDARG00000016516	rbm8a	87	92.715	ENSCCAG00000022460	-	89	92.903	Cebus_capucinus
ENSDARG00000016516	rbm8a	87	93.377	ENSCCAG00000028589	-	89	93.548	Cebus_capucinus
ENSDARG00000016516	rbm8a	87	93.377	ENSCATG00000021691	RBM8A	89	93.548	Cercocebus_atys
ENSDARG00000016516	rbm8a	87	93.377	ENSCLAG00000000547	RBM8A	89	93.548	Chinchilla_lanigera
ENSDARG00000016516	rbm8a	87	93.377	ENSCSAG00000001779	RBM8A	89	93.548	Chlorocebus_sabaeus
ENSDARG00000016516	rbm8a	87	94.040	ENSCPBG00000007941	RBM8A	71	94.194	Chrysemys_picta_bellii
ENSDARG00000016516	rbm8a	91	63.522	ENSCING00000004877	-	91	64.516	Ciona_intestinalis
ENSDARG00000016516	rbm8a	89	63.871	ENSCSAVG00000005685	-	92	63.871	Ciona_savignyi
ENSDARG00000016516	rbm8a	87	93.377	ENSCANG00000042182	RBM8A	89	93.548	Colobus_angolensis_palliatus
ENSDARG00000016516	rbm8a	87	93.377	ENSCGRG00001002681	-	89	93.548	Cricetulus_griseus_chok1gshd
ENSDARG00000016516	rbm8a	99	78.613	ENSCGRG00001003032	-	89	78.710	Cricetulus_griseus_chok1gshd
ENSDARG00000016516	rbm8a	87	93.377	ENSCGRG00000006832	-	89	93.548	Cricetulus_griseus_crigri
ENSDARG00000016516	rbm8a	91	94.937	ENSCSEG00000011865	rbm8a	89	95.484	Cynoglossus_semilaevis
ENSDARG00000016516	rbm8a	91	93.038	ENSCVAG00000020734	rbm8a	88	93.548	Cyprinodon_variegatus
ENSDARG00000016516	rbm8a	52	85.714	ENSDNOG00000025265	-	100	85.714	Dasypus_novemcinctus
ENSDARG00000016516	rbm8a	87	93.377	ENSDORG00000027340	-	97	86.747	Dipodomys_ordii
ENSDARG00000016516	rbm8a	95	62.500	FBgn0033378	tsu	94	63.924	Drosophila_melanogaster
ENSDARG00000016516	rbm8a	89	78.065	ENSETEG00000017932	-	89	78.065	Echinops_telfairi
ENSDARG00000016516	rbm8a	82	87.413	ENSETEG00000008411	-	81	87.413	Echinops_telfairi
ENSDARG00000016516	rbm8a	90	81.410	ENSEBUG00000010386	rbm8a	89	81.290	Eptatretus_burgeri
ENSDARG00000016516	rbm8a	87	93.377	ENSEASG00005007455	RBM8A	89	93.548	Equus_asinus_asinus
ENSDARG00000016516	rbm8a	87	93.377	ENSECAG00000022024	RBM8A	89	93.548	Equus_caballus
ENSDARG00000016516	rbm8a	87	64.901	ENSEEUG00000008823	RBM8A	89	65.806	Erinaceus_europaeus
ENSDARG00000016516	rbm8a	89	95.484	ENSELUG00000012464	rbm8a	89	95.484	Esox_lucius
ENSDARG00000016516	rbm8a	87	92.715	ENSFCAG00000033936	RBM8A	89	92.903	Felis_catus
ENSDARG00000016516	rbm8a	87	93.377	ENSFDAG00000020821	RBM8A	89	93.548	Fukomys_damarensis
ENSDARG00000016516	rbm8a	91	92.405	ENSFHEG00000013538	rbm8a	88	92.903	Fundulus_heteroclitus
ENSDARG00000016516	rbm8a	82	91.549	ENSGMOG00000007353	rbm8a	87	92.086	Gadus_morhua
ENSDARG00000016516	rbm8a	87	80.795	ENSGALG00000036283	RBM8A	88	81.290	Gallus_gallus
ENSDARG00000016516	rbm8a	91	93.038	ENSGAFG00000021698	rbm8a	89	93.548	Gambusia_affinis
ENSDARG00000016516	rbm8a	82	92.254	ENSGACG00000013157	rbm8a	87	93.382	Gasterosteus_aculeatus
ENSDARG00000016516	rbm8a	87	94.040	ENSGAGG00000023769	RBM8A	89	94.194	Gopherus_agassizii
ENSDARG00000016516	rbm8a	87	93.377	ENSGGOG00000037248	RBM8A	89	93.548	Gorilla_gorilla
ENSDARG00000016516	rbm8a	92	95.625	ENSHBUG00000008827	rbm8a	97	96.129	Haplochromis_burtoni
ENSDARG00000016516	rbm8a	87	93.377	ENSHGLG00000007303	RBM8A	89	93.548	Heterocephalus_glaber_female
ENSDARG00000016516	rbm8a	87	93.377	ENSHGLG00100012468	RBM8A	89	93.548	Heterocephalus_glaber_male
ENSDARG00000016516	rbm8a	90	92.949	ENSHCOG00000010122	rbm8a	88	92.903	Hippocampus_comes
ENSDARG00000016516	rbm8a	89	95.484	ENSIPUG00000006525	rbm8a	80	95.484	Ictalurus_punctatus
ENSDARG00000016516	rbm8a	87	92.715	ENSSTOG00000013917	RBM8A	89	92.903	Ictidomys_tridecemlineatus
ENSDARG00000016516	rbm8a	87	93.377	ENSJJAG00000009488	-	89	93.548	Jaculus_jaculus
ENSDARG00000016516	rbm8a	91	94.304	ENSKMAG00000014454	rbm8a	89	94.839	Kryptolebias_marmoratus
ENSDARG00000016516	rbm8a	91	94.937	ENSLBEG00000015720	rbm8a	89	95.484	Labrus_bergylta
ENSDARG00000016516	rbm8a	89	93.631	ENSLACG00000014365	RBM8A	89	93.631	Latimeria_chalumnae
ENSDARG00000016516	rbm8a	100	97.701	ENSLOCG00000009082	rbm8a	100	97.701	Lepisosteus_oculatus
ENSDARG00000016516	rbm8a	99	65.537	ENSLAFG00000011031	-	88	62.658	Loxodonta_africana
ENSDARG00000016516	rbm8a	89	93.548	ENSLAFG00000021886	-	89	93.548	Loxodonta_africana
ENSDARG00000016516	rbm8a	87	93.377	ENSMFAG00000045376	RBM8A	89	93.548	Macaca_fascicularis
ENSDARG00000016516	rbm8a	92	88.623	ENSMMUG00000016051	RBM8A	97	88.889	Macaca_mulatta
ENSDARG00000016516	rbm8a	87	93.377	ENSMNEG00000040422	RBM8A	89	93.548	Macaca_nemestrina
ENSDARG00000016516	rbm8a	87	93.377	ENSMLEG00000039155	RBM8A	89	93.548	Mandrillus_leucophaeus
ENSDARG00000016516	rbm8a	91	93.671	ENSMAMG00000010565	rbm8a	89	94.194	Mastacembelus_armatus
ENSDARG00000016516	rbm8a	91	95.570	ENSMZEG00005016453	rbm8a	89	96.129	Maylandia_zebra
ENSDARG00000016516	rbm8a	87	93.377	ENSMAUG00000016783	-	97	87.273	Mesocricetus_auratus
ENSDARG00000016516	rbm8a	87	93.377	ENSMICG00000031698	-	89	93.548	Microcebus_murinus
ENSDARG00000016516	rbm8a	92	75.000	ENSMICG00000037163	-	94	77.124	Microcebus_murinus
ENSDARG00000016516	rbm8a	87	93.377	ENSMOCG00000017782	-	89	93.548	Microtus_ochrogaster
ENSDARG00000016516	rbm8a	92	81.875	ENSMMOG00000017179	rbm8a	91	81.935	Mola_mola
ENSDARG00000016516	rbm8a	87	92.715	ENSMODG00000018752	RBM8A	89	92.903	Monodelphis_domestica
ENSDARG00000016516	rbm8a	91	93.671	ENSMALG00000010145	rbm8a	89	94.194	Monopterus_albus
ENSDARG00000016516	rbm8a	87	90.066	MGP_CAROLIEiJ_G0014951	Rbm8a2	89	90.323	Mus_caroli
ENSDARG00000016516	rbm8a	87	93.377	MGP_CAROLIEiJ_G0025383	Rbm8a	97	86.747	Mus_caroli
ENSDARG00000016516	rbm8a	87	90.728	ENSMUSG00000078184	Rbm8a2	89	90.968	Mus_musculus
ENSDARG00000016516	rbm8a	87	93.377	ENSMUSG00000038374	Rbm8a	97	86.747	Mus_musculus
ENSDARG00000016516	rbm8a	87	93.377	MGP_PahariEiJ_G0026828	-	97	86.747	Mus_pahari
ENSDARG00000016516	rbm8a	87	93.377	MGP_SPRETEiJ_G0026330	Rbm8a	97	86.747	Mus_spretus
ENSDARG00000016516	rbm8a	87	93.377	ENSMPUG00000000775	RBM8A	89	93.548	Mustela_putorius_furo
ENSDARG00000016516	rbm8a	87	84.768	ENSMLUG00000022711	-	89	85.161	Myotis_lucifugus
ENSDARG00000016516	rbm8a	87	93.377	ENSMLUG00000017436	-	89	93.548	Myotis_lucifugus
ENSDARG00000016516	rbm8a	89	93.548	ENSNGAG00000016038	-	89	93.548	Nannospalax_galili
ENSDARG00000016516	rbm8a	91	95.570	ENSNBRG00000004541	rbm8a	89	96.129	Neolamprologus_brichardi
ENSDARG00000016516	rbm8a	87	93.377	ENSNLEG00000029632	RBM8A	89	93.548	Nomascus_leucogenys
ENSDARG00000016516	rbm8a	62	90.741	ENSMEUG00000016058	RBM8A	85	91.071	Notamacropus_eugenii
ENSDARG00000016516	rbm8a	66	92.982	ENSOPRG00000013316	RBM8A	100	92.982	Ochotona_princeps
ENSDARG00000016516	rbm8a	87	79.470	ENSODEG00000002094	-	88	80.000	Octodon_degus
ENSDARG00000016516	rbm8a	87	79.470	ENSODEG00000008563	-	89	80.000	Octodon_degus
ENSDARG00000016516	rbm8a	87	93.377	ENSODEG00000000114	-	89	93.548	Octodon_degus
ENSDARG00000016516	rbm8a	91	95.570	ENSONIG00000008608	rbm8a	89	96.129	Oreochromis_niloticus
ENSDARG00000016516	rbm8a	87	91.558	ENSOCUG00000025693	RBM8A	89	91.772	Oryctolagus_cuniculus
ENSDARG00000016516	rbm8a	91	92.405	ENSORLG00000016263	rbm8a	89	92.903	Oryzias_latipes
ENSDARG00000016516	rbm8a	92	92.500	ENSORLG00020012904	rbm8a	82	92.903	Oryzias_latipes_hni
ENSDARG00000016516	rbm8a	91	92.405	ENSORLG00015018824	rbm8a	89	92.903	Oryzias_latipes_hsok
ENSDARG00000016516	rbm8a	91	93.038	ENSOMEG00000021533	rbm8a	69	93.548	Oryzias_melastigma
ENSDARG00000016516	rbm8a	87	91.558	ENSOGAG00000000202	RBM8A	89	91.772	Otolemur_garnettii
ENSDARG00000016516	rbm8a	87	92.715	ENSOARG00000020634	RBM8A	89	92.903	Ovis_aries
ENSDARG00000016516	rbm8a	87	93.377	ENSPPAG00000029116	RBM8A	89	93.548	Pan_paniscus
ENSDARG00000016516	rbm8a	87	92.715	ENSPPRG00000008243	RBM8A	89	92.903	Panthera_pardus
ENSDARG00000016516	rbm8a	87	93.377	ENSPTIG00000009472	RBM8A	89	93.548	Panthera_tigris_altaica
ENSDARG00000016516	rbm8a	87	93.377	ENSPTRG00000001201	RBM8A	89	93.548	Pan_troglodytes
ENSDARG00000016516	rbm8a	87	93.377	ENSPANG00000020584	RBM8A	89	93.548	Papio_anubis
ENSDARG00000016516	rbm8a	89	94.194	ENSPKIG00000020558	rbm8a	89	94.194	Paramormyrops_kingsleyae
ENSDARG00000016516	rbm8a	90	94.268	ENSPKIG00000009551	rbm8a	66	94.839	Paramormyrops_kingsleyae
ENSDARG00000016516	rbm8a	100	96.000	ENSPMGG00000010122	rbm8a	100	96.000	Periophthalmus_magnuspinnatus
ENSDARG00000016516	rbm8a	87	93.377	ENSPEMG00000018117	-	89	93.548	Peromyscus_maniculatus_bairdii
ENSDARG00000016516	rbm8a	87	92.715	ENSPCIG00000011931	RBM8A	89	92.903	Phascolarctos_cinereus
ENSDARG00000016516	rbm8a	91	93.671	ENSPFOG00000010695	rbm8a	89	94.194	Poecilia_formosa
ENSDARG00000016516	rbm8a	91	93.671	ENSPLAG00000009183	rbm8a	89	94.194	Poecilia_latipinna
ENSDARG00000016516	rbm8a	91	93.671	ENSPMEG00000013950	rbm8a	89	94.194	Poecilia_mexicana
ENSDARG00000016516	rbm8a	92	93.125	ENSPREG00000017572	rbm8a	97	93.548	Poecilia_reticulata
ENSDARG00000016516	rbm8a	87	93.377	ENSPPYG00000000929	RBM8A	89	93.548	Pongo_abelii
ENSDARG00000016516	rbm8a	89	94.194	ENSPCAG00000002146	-	89	94.194	Procavia_capensis
ENSDARG00000016516	rbm8a	87	93.377	ENSPCOG00000022886	RBM8A	89	93.548	Propithecus_coquereli
ENSDARG00000016516	rbm8a	87	93.377	ENSPVAG00000014471	RBM8A	89	93.548	Pteropus_vampyrus
ENSDARG00000016516	rbm8a	91	95.570	ENSPNYG00000013564	rbm8a	89	96.129	Pundamilia_nyererei
ENSDARG00000016516	rbm8a	100	98.276	ENSPNAG00000028502	rbm8a	100	98.276	Pygocentrus_nattereri
ENSDARG00000016516	rbm8a	87	93.377	ENSRNOG00000021215	Rbm8a	89	93.548	Rattus_norvegicus
ENSDARG00000016516	rbm8a	87	92.715	ENSRBIG00000039233	RBM8A	89	92.903	Rhinopithecus_bieti
ENSDARG00000016516	rbm8a	87	93.377	ENSRROG00000040324	-	89	93.548	Rhinopithecus_roxellana
ENSDARG00000016516	rbm8a	87	87.417	ENSRROG00000033023	-	89	87.097	Rhinopithecus_roxellana
ENSDARG00000016516	rbm8a	87	93.377	ENSSBOG00000031316	RBM8A	89	93.548	Saimiri_boliviensis_boliviensis
ENSDARG00000016516	rbm8a	87	92.715	ENSSHAG00000018629	RBM8A	89	92.903	Sarcophilus_harrisii
ENSDARG00000016516	rbm8a	100	97.701	ENSSFOG00015009007	rbm8a	100	97.701	Scleropages_formosus
ENSDARG00000016516	rbm8a	89	93.548	ENSSFOG00015024171	rbm8a	89	93.548	Scleropages_formosus
ENSDARG00000016516	rbm8a	91	94.304	ENSSMAG00000012998	rbm8a	89	94.839	Scophthalmus_maximus
ENSDARG00000016516	rbm8a	91	95.570	ENSSDUG00000005911	rbm8a	89	96.129	Seriola_dumerili
ENSDARG00000016516	rbm8a	91	95.570	ENSSLDG00000011664	rbm8a	89	96.129	Seriola_lalandi_dorsalis
ENSDARG00000016516	rbm8a	87	93.377	ENSSARG00000013289	RBM8A	89	93.548	Sorex_araneus
ENSDARG00000016516	rbm8a	87	94.702	ENSSPUG00000001576	RBM8A	89	94.839	Sphenodon_punctatus
ENSDARG00000016516	rbm8a	91	95.570	ENSSPAG00000012181	rbm8a	89	96.129	Stegastes_partitus
ENSDARG00000016516	rbm8a	87	93.377	ENSSSCG00000028509	RBM8A	89	93.548	Sus_scrofa
ENSDARG00000016516	rbm8a	87	94.040	ENSTGUG00000004447	RBM8A	89	94.194	Taeniopygia_guttata
ENSDARG00000016516	rbm8a	91	93.038	ENSTRUG00000013173	rbm8a	88	93.548	Takifugu_rubripes
ENSDARG00000016516	rbm8a	91	92.405	ENSTNIG00000006869	rbm8a	89	92.903	Tetraodon_nigroviridis
ENSDARG00000016516	rbm8a	66	92.982	ENSTBEG00000014947	RBM8A	100	92.982	Tupaia_belangeri
ENSDARG00000016516	rbm8a	74	92.969	ENSTTRG00000009081	RBM8A	87	93.182	Tursiops_truncatus
ENSDARG00000016516	rbm8a	87	93.377	ENSUAMG00000021929	RBM8A	89	93.548	Ursus_americanus
ENSDARG00000016516	rbm8a	87	93.377	ENSUMAG00000010298	RBM8A	89	93.548	Ursus_maritimus
ENSDARG00000016516	rbm8a	87	93.377	ENSVVUG00000007486	RBM8A	89	93.548	Vulpes_vulpes
ENSDARG00000016516	rbm8a	91	93.038	ENSXCOG00000004369	rbm8a	89	93.548	Xiphophorus_couchianus
ENSDARG00000016516	rbm8a	91	93.038	ENSXMAG00000013463	rbm8a	97	92.258	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	21873635.	IBA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISS	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0006417	regulation of translation	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0035145	exon-exon junction complex	21873635.	IBA	Component
GO:0051028	mRNA transport	-	IEA	Process
GO:0071006	U2-type catalytic step 1 spliceosome	-	ISS	Component