EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000016783 (Gene tree)
Gene ID: 494133
Gene Symbol: srsf6b
Alias: sfrs6|sfrs6b|wu:faa54g02|wu:fc17h09|zgc:103497
Full Name: serine/arginine-rich splicing factor 6b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 8739 bases
Position: chr11:1522127-1530865
Accession: ZDB-GENE-041219-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000022089	RRM_1	PF00076.22	2.8e-31	1	2
ENSDARP00000022089	RRM_1	PF00076.22	2.8e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000139079	-	808	-	-	- (aa)	-	-
ENSDART00000002318	-	2496	XM_021479605	ENSDARP00000022089	355 (aa)	XP_021335280	A8DZG2
ENSDART00000143814	-	1084	-	ENSDARP00000139854	95 (aa)	-	A0A0R4ISU1
ENSDART00000147311	-	713	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000016783's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG
dre05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000016783's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000016783	srsf6b	79	46.154	ENSDARG00000025397	srsf3a	54	46.575
ENSDARG00000016783	srsf6b	72	72.059	ENSDARG00000029818	srsf5a	92	62.698
ENSDARG00000016783	srsf6b	77	42.105	ENSDARG00000035325	srsf7a	78	42.466
ENSDARG00000016783	srsf6b	79	46.154	ENSDARG00000100815	srsf3a	54	46.575
ENSDARG00000016783	srsf6b	69	46.479	ENSDARG00000017843	srsf1b	66	43.503
ENSDARG00000016783	srsf6b	74	45.333	ENSDARG00000057691	srsf1a	89	46.328
ENSDARG00000016783	srsf6b	73	66.667	ENSDARG00000027734	srsf5b	87	55.556
ENSDARG00000016783	srsf6b	74	42.667	ENSDARG00000008097	srsf9	78	37.915
ENSDARG00000016783	srsf6b	80	45.570	ENSDARG00000059360	srsf3b	59	46.575
ENSDARG00000016783	srsf6b	80	76.316	ENSDARG00000105293	srsf4	68	76.389

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000016783	srsf6b	87	89.157	ENSG00000124193	SRSF6	55	90.541	Homo_sapiens
ENSDARG00000016783	srsf6b	82	93.590	ENSAPOG00000016635	-	84	85.294	Acanthochromis_polyacanthus
ENSDARG00000016783	srsf6b	69	56.716	ENSAMEG00000003710	SRSF6	53	68.085	Ailuropoda_melanoleuca
ENSDARG00000016783	srsf6b	75	95.775	ENSACIG00000023658	-	56	88.043	Amphilophus_citrinellus
ENSDARG00000016783	srsf6b	92	88.506	ENSACIG00000020091	-	95	81.679	Amphilophus_citrinellus
ENSDARG00000016783	srsf6b	94	83.146	ENSAOCG00000004309	-	57	82.353	Amphiprion_ocellaris
ENSDARG00000016783	srsf6b	82	93.590	ENSAOCG00000019438	-	68	93.506	Amphiprion_ocellaris
ENSDARG00000016783	srsf6b	95	83.333	ENSAPEG00000020746	-	65	82.353	Amphiprion_percula
ENSDARG00000016783	srsf6b	82	93.590	ENSAPEG00000013086	-	53	88.770	Amphiprion_percula
ENSDARG00000016783	srsf6b	98	80.645	ENSATEG00000007255	-	71	79.570	Anabas_testudineus
ENSDARG00000016783	srsf6b	82	88.462	ENSACAG00000002061	SRSF6	52	82.353	Anolis_carolinensis
ENSDARG00000016783	srsf6b	87	89.157	ENSANAG00000024080	SRSF6	55	90.541	Aotus_nancymaae
ENSDARG00000016783	srsf6b	77	91.781	ENSACLG00000024373	-	77	91.781	Astatotilapia_calliptera
ENSDARG00000016783	srsf6b	85	93.827	ENSAMXG00000042692	-	96	87.407	Astyanax_mexicanus
ENSDARG00000016783	srsf6b	87	90.361	ENSBTAG00000008527	SRSF6	55	91.892	Bos_taurus
ENSDARG00000016783	srsf6b	87	89.157	ENSCJAG00000048403	SRSF6	68	83.957	Callithrix_jacchus
ENSDARG00000016783	srsf6b	87	90.361	ENSCAFG00000009289	SRSF6	55	91.892	Canis_familiaris
ENSDARG00000016783	srsf6b	87	90.361	ENSCAFG00020013559	SRSF6	55	91.892	Canis_lupus_dingo
ENSDARG00000016783	srsf6b	82	89.744	ENSCHIG00000009148	-	53	82.888	Capra_hircus
ENSDARG00000016783	srsf6b	87	90.361	ENSCHIG00000015890	-	55	91.892	Capra_hircus
ENSDARG00000016783	srsf6b	87	89.157	ENSCPOG00000011761	SRSF6	55	90.541	Cavia_porcellus
ENSDARG00000016783	srsf6b	87	89.157	ENSCCAG00000026018	-	55	90.541	Cebus_capucinus
ENSDARG00000016783	srsf6b	97	67.021	ENSCCAG00000018540	-	60	72.872	Cebus_capucinus
ENSDARG00000016783	srsf6b	87	89.157	ENSCATG00000030794	SRSF6	55	90.541	Cercocebus_atys
ENSDARG00000016783	srsf6b	87	89.157	ENSCLAG00000010247	SRSF6	55	90.541	Chinchilla_lanigera
ENSDARG00000016783	srsf6b	82	91.026	ENSCSAG00000014022	SRSF6	53	83.957	Chlorocebus_sabaeus
ENSDARG00000016783	srsf6b	82	91.026	ENSCPBG00000018200	SRSF6	54	84.492	Chrysemys_picta_bellii
ENSDARG00000016783	srsf6b	82	91.026	ENSCANG00000037774	-	53	82.888	Colobus_angolensis_palliatus
ENSDARG00000016783	srsf6b	87	89.157	ENSCGRG00001022339	Srsf6	55	90.541	Cricetulus_griseus_chok1gshd
ENSDARG00000016783	srsf6b	82	96.154	ENSCSEG00000019778	SRSF6	90	76.336	Cynoglossus_semilaevis
ENSDARG00000016783	srsf6b	82	93.590	ENSCVAG00000001863	SRSF6	95	83.206	Cyprinodon_variegatus
ENSDARG00000016783	srsf6b	82	91.026	ENSDNOG00000008410	SRSF6	53	83.957	Dasypus_novemcinctus
ENSDARG00000016783	srsf6b	87	89.157	ENSDORG00000028378	Srsf6	55	90.541	Dipodomys_ordii
ENSDARG00000016783	srsf6b	82	85.897	ENSETEG00000006221	SRSF6	53	81.283	Echinops_telfairi
ENSDARG00000016783	srsf6b	82	92.308	ENSEASG00005023429	SRSF6	53	83.957	Equus_asinus_asinus
ENSDARG00000016783	srsf6b	82	92.308	ENSECAG00000023932	SRSF6	56	83.957	Equus_caballus
ENSDARG00000016783	srsf6b	96	88.043	ENSELUG00000013506	SRSF6	69	93.506	Esox_lucius
ENSDARG00000016783	srsf6b	100	83.158	ENSELUG00000024182	SRSF6	90	82.258	Esox_lucius
ENSDARG00000016783	srsf6b	82	92.308	ENSFCAG00000032814	SRSF6	53	83.957	Felis_catus
ENSDARG00000016783	srsf6b	82	93.590	ENSFHEG00000023065	srsf6a	54	87.701	Fundulus_heteroclitus
ENSDARG00000016783	srsf6b	80	90.789	ENSGMOG00000014458	srsf6a	51	83.158	Gadus_morhua
ENSDARG00000016783	srsf6b	99	75.532	ENSGMOG00000006105	srsf6a	62	72.131	Gadus_morhua
ENSDARG00000016783	srsf6b	85	90.123	ENSGALG00000000990	SRSF6	55	90.541	Gallus_gallus
ENSDARG00000016783	srsf6b	83	93.671	ENSGAFG00000019088	-	72	85.714	Gambusia_affinis
ENSDARG00000016783	srsf6b	91	91.860	ENSGACG00000006084	srsf6a	53	87.166	Gasterosteus_aculeatus
ENSDARG00000016783	srsf6b	82	91.026	ENSGAGG00000003238	SRSF6	54	84.492	Gopherus_agassizii
ENSDARG00000016783	srsf6b	87	89.157	ENSGGOG00000009808	SRSF6	55	90.541	Gorilla_gorilla
ENSDARG00000016783	srsf6b	80	92.105	ENSHBUG00000006386	-	57	82.888	Haplochromis_burtoni
ENSDARG00000016783	srsf6b	87	89.157	ENSHGLG00000007348	SRSF6	55	90.541	Heterocephalus_glaber_female
ENSDARG00000016783	srsf6b	98	60.825	ENSHGLG00000007701	-	57	65.775	Heterocephalus_glaber_female
ENSDARG00000016783	srsf6b	82	89.744	ENSHCOG00000002740	srsf6a	57	81.818	Hippocampus_comes
ENSDARG00000016783	srsf6b	82	93.590	ENSIPUG00000004776	-	70	84.390	Ictalurus_punctatus
ENSDARG00000016783	srsf6b	87	89.157	ENSSTOG00000010866	SRSF6	55	90.541	Ictidomys_tridecemlineatus
ENSDARG00000016783	srsf6b	77	94.521	ENSKMAG00000011934	srsf6a	61	82.474	Kryptolebias_marmoratus
ENSDARG00000016783	srsf6b	82	94.872	ENSLBEG00000007356	srsf6a	51	86.022	Labrus_bergylta
ENSDARG00000016783	srsf6b	98	81.633	ENSLACG00000005466	SRSF6	54	82.888	Latimeria_chalumnae
ENSDARG00000016783	srsf6b	87	89.157	ENSMFAG00000036925	SRSF6	55	90.541	Macaca_fascicularis
ENSDARG00000016783	srsf6b	87	89.157	ENSMMUG00000006742	SRSF6	55	90.541	Macaca_mulatta
ENSDARG00000016783	srsf6b	82	91.026	ENSMNEG00000038270	-	53	83.957	Macaca_nemestrina
ENSDARG00000016783	srsf6b	87	89.157	ENSMNEG00000027392	-	55	90.541	Macaca_nemestrina
ENSDARG00000016783	srsf6b	82	96.154	ENSMAMG00000017161	srsf6a	53	89.305	Mastacembelus_armatus
ENSDARG00000016783	srsf6b	86	91.463	ENSMAMG00000023477	-	78	93.151	Mastacembelus_armatus
ENSDARG00000016783	srsf6b	80	92.105	ENSMZEG00005008032	-	57	82.888	Maylandia_zebra
ENSDARG00000016783	srsf6b	82	92.308	ENSMZEG00005020658	-	60	82.162	Maylandia_zebra
ENSDARG00000016783	srsf6b	87	89.157	ENSMAUG00000019086	-	55	90.541	Mesocricetus_auratus
ENSDARG00000016783	srsf6b	87	89.157	ENSMICG00000008537	SRSF6	55	90.541	Microcebus_murinus
ENSDARG00000016783	srsf6b	82	94.872	ENSMMOG00000015241	-	72	94.805	Mola_mola
ENSDARG00000016783	srsf6b	82	91.026	ENSMODG00000003107	SRSF6	54	83.957	Monodelphis_domestica
ENSDARG00000016783	srsf6b	87	89.157	MGP_CAROLIEiJ_G0024606	Srsf6	55	90.541	Mus_caroli
ENSDARG00000016783	srsf6b	87	89.157	ENSMUSG00000016921	Srsf6	55	90.541	Mus_musculus
ENSDARG00000016783	srsf6b	87	89.157	MGP_PahariEiJ_G0026050	Srsf6	55	90.541	Mus_pahari
ENSDARG00000016783	srsf6b	87	89.157	MGP_SPRETEiJ_G0025528	Srsf6	55	90.541	Mus_spretus
ENSDARG00000016783	srsf6b	82	92.308	ENSMPUG00000017692	SRSF6	64	83.957	Mustela_putorius_furo
ENSDARG00000016783	srsf6b	53	58.140	ENSMLUG00000016618	SRSF6	53	56.808	Myotis_lucifugus
ENSDARG00000016783	srsf6b	87	89.157	ENSNGAG00000017560	Srsf6	55	90.541	Nannospalax_galili
ENSDARG00000016783	srsf6b	82	96.154	ENSNBRG00000001846	-	52	88.235	Neolamprologus_brichardi
ENSDARG00000016783	srsf6b	80	92.105	ENSNBRG00000014709	-	57	82.888	Neolamprologus_brichardi
ENSDARG00000016783	srsf6b	87	89.157	ENSNLEG00000006524	SRSF6	55	90.541	Nomascus_leucogenys
ENSDARG00000016783	srsf6b	82	91.026	ENSMEUG00000014615	SRSF6	61	83.957	Notamacropus_eugenii
ENSDARG00000016783	srsf6b	87	89.157	ENSODEG00000016510	-	55	90.541	Octodon_degus
ENSDARG00000016783	srsf6b	85	90.123	ENSONIG00000020247	-	53	83.422	Oreochromis_niloticus
ENSDARG00000016783	srsf6b	82	96.154	ENSONIG00000001925	-	52	89.305	Oreochromis_niloticus
ENSDARG00000016783	srsf6b	63	66.234	ENSOCUG00000009785	-	63	67.526	Oryctolagus_cuniculus
ENSDARG00000016783	srsf6b	51	54.167	ENSOCUG00000023999	-	70	47.027	Oryctolagus_cuniculus
ENSDARG00000016783	srsf6b	82	92.308	ENSORLG00020017506	srsf6a	91	66.460	Oryzias_latipes_hni
ENSDARG00000016783	srsf6b	82	91.026	ENSOGAG00000014468	SRSF6	53	83.422	Otolemur_garnettii
ENSDARG00000016783	srsf6b	79	86.667	ENSOARG00000003117	SRSF6	53	80.749	Ovis_aries
ENSDARG00000016783	srsf6b	82	83.333	ENSPPAG00000043131	-	57	67.914	Pan_paniscus
ENSDARG00000016783	srsf6b	82	89.744	ENSPPAG00000034327	-	53	83.422	Pan_paniscus
ENSDARG00000016783	srsf6b	82	92.308	ENSPPRG00000008917	SRSF6	53	83.957	Panthera_pardus
ENSDARG00000016783	srsf6b	82	83.333	ENSPTRG00000046274	-	57	67.914	Pan_troglodytes
ENSDARG00000016783	srsf6b	87	89.157	ENSPTRG00000044686	-	55	90.541	Pan_troglodytes
ENSDARG00000016783	srsf6b	87	89.157	ENSPANG00000035224	SRSF6	55	90.541	Papio_anubis
ENSDARG00000016783	srsf6b	82	94.872	ENSPKIG00000015603	-	88	85.496	Paramormyrops_kingsleyae
ENSDARG00000016783	srsf6b	100	86.316	ENSPKIG00000018463	-	76	93.506	Paramormyrops_kingsleyae
ENSDARG00000016783	srsf6b	88	71.429	ENSPKIG00000015703	-	95	57.516	Paramormyrops_kingsleyae
ENSDARG00000016783	srsf6b	82	96.154	ENSPMGG00000014963	srsf6a	55	88.770	Periophthalmus_magnuspinnatus
ENSDARG00000016783	srsf6b	87	89.157	ENSPCIG00000003820	SRSF6	55	90.541	Phascolarctos_cinereus
ENSDARG00000016783	srsf6b	82	94.872	ENSPFOG00000006437	srsf6a	50	89.947	Poecilia_formosa
ENSDARG00000016783	srsf6b	83	93.671	ENSPLAG00000009243	srsf6a	80	85.938	Poecilia_latipinna
ENSDARG00000016783	srsf6b	83	93.671	ENSPMEG00000006042	SRSF6	53	88.235	Poecilia_mexicana
ENSDARG00000016783	srsf6b	83	93.671	ENSPREG00000001040	srsf6a	87	87.023	Poecilia_reticulata
ENSDARG00000016783	srsf6b	82	91.026	ENSPPYG00000011019	SRSF6	53	83.957	Pongo_abelii
ENSDARG00000016783	srsf6b	82	89.744	ENSPCAG00000010954	SRSF6	55	82.353	Procavia_capensis
ENSDARG00000016783	srsf6b	87	89.157	ENSPCOG00000026364	SRSF6	55	90.541	Propithecus_coquereli
ENSDARG00000016783	srsf6b	82	92.308	ENSPVAG00000015232	SRSF6	53	83.871	Pteropus_vampyrus
ENSDARG00000016783	srsf6b	80	92.105	ENSPNYG00000004944	-	57	82.888	Pundamilia_nyererei
ENSDARG00000016783	srsf6b	82	96.154	ENSPNYG00000011272	-	51	88.235	Pundamilia_nyererei
ENSDARG00000016783	srsf6b	89	91.765	ENSPNAG00000023179	-	94	82.443	Pygocentrus_nattereri
ENSDARG00000016783	srsf6b	82	91.026	ENSRNOG00000006380	Srsf6	54	83.957	Rattus_norvegicus
ENSDARG00000016783	srsf6b	84	91.250	ENSRBIG00000041414	SRSF6	57	90.541	Rhinopithecus_bieti
ENSDARG00000016783	srsf6b	87	89.157	ENSRROG00000029989	SRSF6	55	90.541	Rhinopithecus_roxellana
ENSDARG00000016783	srsf6b	87	89.157	ENSSBOG00000033708	-	55	90.541	Saimiri_boliviensis_boliviensis
ENSDARG00000016783	srsf6b	94	70.787	ENSSBOG00000034078	-	54	62.755	Saimiri_boliviensis_boliviensis
ENSDARG00000016783	srsf6b	82	91.026	ENSSHAG00000012805	SRSF6	54	83.957	Sarcophilus_harrisii
ENSDARG00000016783	srsf6b	81	94.805	ENSSFOG00015015169	SRSF6	59	89.305	Scleropages_formosus
ENSDARG00000016783	srsf6b	80	96.053	ENSSFOG00015019681	-	53	88.601	Scleropages_formosus
ENSDARG00000016783	srsf6b	84	92.500	ENSSMAG00000014861	-	54	94.521	Scophthalmus_maximus
ENSDARG00000016783	srsf6b	80	90.789	ENSSMAG00000017447	-	55	77.957	Scophthalmus_maximus
ENSDARG00000016783	srsf6b	82	96.154	ENSSDUG00000016097	srsf6a	53	89.305	Seriola_dumerili
ENSDARG00000016783	srsf6b	86	91.463	ENSSDUG00000011036	-	79	93.151	Seriola_dumerili
ENSDARG00000016783	srsf6b	82	96.154	ENSSLDG00000022841	srsf6a	53	89.305	Seriola_lalandi_dorsalis
ENSDARG00000016783	srsf6b	86	91.463	ENSSLDG00000014858	-	79	93.151	Seriola_lalandi_dorsalis
ENSDARG00000016783	srsf6b	85	90.123	ENSSPUG00000004967	SRSF6	55	90.541	Sphenodon_punctatus
ENSDARG00000016783	srsf6b	86	89.024	ENSSPAG00000021913	-	76	91.781	Stegastes_partitus
ENSDARG00000016783	srsf6b	82	96.154	ENSSPAG00000002362	srsf6a	66	93.085	Stegastes_partitus
ENSDARG00000016783	srsf6b	82	92.308	ENSSSCG00000007362	SRSF6	61	83.957	Sus_scrofa
ENSDARG00000016783	srsf6b	82	91.026	ENSTGUG00000003455	SRSF6	53	83.957	Taeniopygia_guttata
ENSDARG00000016783	srsf6b	92	86.957	ENSTRUG00000021397	-	79	95.890	Takifugu_rubripes
ENSDARG00000016783	srsf6b	82	96.154	ENSTNIG00000001692	srsf6a	56	88.235	Tetraodon_nigroviridis
ENSDARG00000016783	srsf6b	87	90.361	ENSUAMG00000003559	SRSF6	55	91.892	Ursus_americanus
ENSDARG00000016783	srsf6b	82	94.872	ENSXMAG00000021849	srsf6a	55	87.166	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0036002	pre-mRNA binding	21873635.	IBA	Function
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process