EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000016855 (Gene tree)
Gene ID: 436751
Gene Symbol: sf3b5
Alias: Splicing factor 3B subunit 10|si:ch211-8a9.5|zgc:92874
Full Name: splicing factor 3b%2C subunit 5
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 3758 bases
Position: chr13:23897975-23901732
Accession: ZDB-GENE-040718-181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000016634	SF3b10	PF07189.11	2.1e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000002244	-	564	-	ENSDARP00000016634	86 (aa)	-	Q6ZM78

Gene Model

Click here to download ENSDARG00000016855's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000016855's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000016855	sf3b5	99	95.294	ENSG00000169976	SF3B5	99	95.294	Homo_sapiens
ENSDARG00000016855	sf3b5	100	96.512	ENSAPOG00000001721	sf3b5	100	96.512	Acanthochromis_polyacanthus
ENSDARG00000016855	sf3b5	100	96.512	ENSACIG00000008106	sf3b5	100	96.512	Amphilophus_citrinellus
ENSDARG00000016855	sf3b5	100	96.512	ENSAOCG00000023367	sf3b5	100	96.512	Amphiprion_ocellaris
ENSDARG00000016855	sf3b5	100	96.512	ENSAPEG00000004605	sf3b5	100	96.512	Amphiprion_percula
ENSDARG00000016855	sf3b5	100	95.349	ENSATEG00000009720	sf3b5	100	95.349	Anabas_testudineus
ENSDARG00000016855	sf3b5	100	91.860	ENSACAG00000007948	SF3B5	100	91.860	Anolis_carolinensis
ENSDARG00000016855	sf3b5	99	95.294	ENSANAG00000019999	SF3B5	99	95.294	Aotus_nancymaae
ENSDARG00000016855	sf3b5	100	96.512	ENSACLG00000022410	sf3b5	100	96.512	Astatotilapia_calliptera
ENSDARG00000016855	sf3b5	99	95.294	ENSBTAG00000009795	SF3B5	99	95.294	Bos_taurus
ENSDARG00000016855	sf3b5	99	95.294	ENSCJAG00000046566	SF3B5	99	95.294	Callithrix_jacchus
ENSDARG00000016855	sf3b5	99	95.294	ENSCAFG00000032495	SF3B5	99	95.294	Canis_familiaris
ENSDARG00000016855	sf3b5	99	95.294	ENSCAFG00020000873	SF3B5	99	95.294	Canis_lupus_dingo
ENSDARG00000016855	sf3b5	99	95.294	ENSCHIG00000007987	SF3B5	99	95.294	Capra_hircus
ENSDARG00000016855	sf3b5	99	95.294	ENSTSYG00000012236	SF3B5	99	95.294	Carlito_syrichta
ENSDARG00000016855	sf3b5	99	95.294	ENSCPOG00000012435	SF3B5	99	95.294	Cavia_porcellus
ENSDARG00000016855	sf3b5	99	95.294	ENSCCAG00000006528	SF3B5	99	95.294	Cebus_capucinus
ENSDARG00000016855	sf3b5	99	95.294	ENSCATG00000010192	SF3B5	99	95.294	Cercocebus_atys
ENSDARG00000016855	sf3b5	99	95.294	ENSCLAG00000017802	SF3B5	99	95.294	Chinchilla_lanigera
ENSDARG00000016855	sf3b5	99	95.294	ENSCSAG00000000187	SF3B5	99	95.294	Chlorocebus_sabaeus
ENSDARG00000016855	sf3b5	100	94.186	ENSCPBG00000017148	SF3B5	100	94.186	Chrysemys_picta_bellii
ENSDARG00000016855	sf3b5	97	74.699	ENSCING00000021953	-	97	74.699	Ciona_intestinalis
ENSDARG00000016855	sf3b5	99	95.294	ENSCANG00000002639	SF3B5	99	95.294	Colobus_angolensis_palliatus
ENSDARG00000016855	sf3b5	99	94.118	ENSCGRG00001007249	Sf3b5	99	94.118	Cricetulus_griseus_chok1gshd
ENSDARG00000016855	sf3b5	99	94.118	ENSCGRG00000019185	Sf3b5	99	94.118	Cricetulus_griseus_crigri
ENSDARG00000016855	sf3b5	100	94.186	ENSCSEG00000003216	sf3b5	100	94.186	Cynoglossus_semilaevis
ENSDARG00000016855	sf3b5	100	95.349	ENSCVAG00000005040	sf3b5	100	95.349	Cyprinodon_variegatus
ENSDARG00000016855	sf3b5	99	95.294	ENSDNOG00000048829	SF3B5	81	95.294	Dasypus_novemcinctus
ENSDARG00000016855	sf3b5	99	95.294	ENSDORG00000005838	Sf3b5	99	95.294	Dipodomys_ordii
ENSDARG00000016855	sf3b5	99	83.529	FBgn0040534	Sf3b5	100	83.529	Drosophila_melanogaster
ENSDARG00000016855	sf3b5	99	95.294	ENSETEG00000004047	SF3B5	99	95.294	Echinops_telfairi
ENSDARG00000016855	sf3b5	99	82.353	ENSEBUG00000002311	sf3b5	100	82.353	Eptatretus_burgeri
ENSDARG00000016855	sf3b5	99	95.294	ENSEASG00005009522	SF3B5	99	95.294	Equus_asinus_asinus
ENSDARG00000016855	sf3b5	99	95.294	ENSECAG00000005457	SF3B5	99	95.294	Equus_caballus
ENSDARG00000016855	sf3b5	100	94.186	ENSELUG00000014290	SF3B5	100	94.186	Esox_lucius
ENSDARG00000016855	sf3b5	99	95.294	ENSFCAG00000000936	SF3B5	99	95.294	Felis_catus
ENSDARG00000016855	sf3b5	100	90.698	ENSFALG00000015012	SF3B5	100	90.698	Ficedula_albicollis
ENSDARG00000016855	sf3b5	99	95.294	ENSFDAG00000003664	SF3B5	99	95.294	Fukomys_damarensis
ENSDARG00000016855	sf3b5	100	95.349	ENSFHEG00000020301	sf3b5	100	95.349	Fundulus_heteroclitus
ENSDARG00000016855	sf3b5	100	95.349	ENSGMOG00000019972	sf3b5	100	95.349	Gadus_morhua
ENSDARG00000016855	sf3b5	100	93.023	ENSGALG00000030824	SF3B5	100	93.023	Gallus_gallus
ENSDARG00000016855	sf3b5	100	95.349	ENSGAFG00000000271	sf3b5	100	95.349	Gambusia_affinis
ENSDARG00000016855	sf3b5	100	95.349	ENSGACG00000010363	sf3b5	100	95.349	Gasterosteus_aculeatus
ENSDARG00000016855	sf3b5	100	94.186	ENSGAGG00000011434	SF3B5	100	94.186	Gopherus_agassizii
ENSDARG00000016855	sf3b5	100	89.535	ENSGAGG00000000646	-	100	89.535	Gopherus_agassizii
ENSDARG00000016855	sf3b5	99	95.294	ENSGGOG00000001537	SF3B5	99	95.294	Gorilla_gorilla
ENSDARG00000016855	sf3b5	100	96.512	ENSHBUG00000008925	sf3b5	100	96.512	Haplochromis_burtoni
ENSDARG00000016855	sf3b5	99	95.294	ENSHGLG00000021406	SF3B5	99	95.294	Heterocephalus_glaber_female
ENSDARG00000016855	sf3b5	99	95.294	ENSHGLG00100020370	SF3B5	99	95.294	Heterocephalus_glaber_male
ENSDARG00000016855	sf3b5	100	94.186	ENSHCOG00000016806	sf3b5	100	94.186	Hippocampus_comes
ENSDARG00000016855	sf3b5	100	94.186	ENSHCOG00000016802	sf3b5	100	94.186	Hippocampus_comes
ENSDARG00000016855	sf3b5	100	94.186	ENSHCOG00000009115	-	100	94.186	Hippocampus_comes
ENSDARG00000016855	sf3b5	100	95.349	ENSIPUG00000015166	sf3b5	100	95.349	Ictalurus_punctatus
ENSDARG00000016855	sf3b5	99	95.294	ENSSTOG00000003347	SF3B5	99	95.294	Ictidomys_tridecemlineatus
ENSDARG00000016855	sf3b5	99	95.294	ENSJJAG00000001857	Sf3b5	99	95.294	Jaculus_jaculus
ENSDARG00000016855	sf3b5	100	95.349	ENSKMAG00000002249	sf3b5	100	95.349	Kryptolebias_marmoratus
ENSDARG00000016855	sf3b5	100	95.349	ENSLBEG00000019847	sf3b5	100	95.349	Labrus_bergylta
ENSDARG00000016855	sf3b5	100	90.698	ENSLACG00000000946	SF3B5	100	90.698	Latimeria_chalumnae
ENSDARG00000016855	sf3b5	100	94.186	ENSLOCG00000017352	sf3b5	100	94.186	Lepisosteus_oculatus
ENSDARG00000016855	sf3b5	99	95.294	ENSLAFG00000032489	SF3B5	99	95.294	Loxodonta_africana
ENSDARG00000016855	sf3b5	99	95.294	ENSMFAG00000029753	SF3B5	99	95.294	Macaca_fascicularis
ENSDARG00000016855	sf3b5	99	95.294	ENSMMUG00000047691	SF3B5	99	95.294	Macaca_mulatta
ENSDARG00000016855	sf3b5	99	95.294	ENSMNEG00000028236	SF3B5	99	95.294	Macaca_nemestrina
ENSDARG00000016855	sf3b5	99	95.294	ENSMLEG00000007622	SF3B5	99	95.294	Mandrillus_leucophaeus
ENSDARG00000016855	sf3b5	100	96.512	ENSMAMG00000021639	sf3b5	100	96.512	Mastacembelus_armatus
ENSDARG00000016855	sf3b5	100	96.512	ENSMZEG00005028115	SF3B5	100	96.512	Maylandia_zebra
ENSDARG00000016855	sf3b5	100	96.512	ENSMZEG00005027408	sf3b5	100	96.512	Maylandia_zebra
ENSDARG00000016855	sf3b5	100	86.047	ENSMZEG00005027407	sf3b5	100	86.047	Maylandia_zebra
ENSDARG00000016855	sf3b5	100	93.023	ENSMGAG00000015849	SF3B5	100	93.023	Meleagris_gallopavo
ENSDARG00000016855	sf3b5	99	94.118	ENSMAUG00000008283	Sf3b5	99	94.118	Mesocricetus_auratus
ENSDARG00000016855	sf3b5	99	95.294	ENSMICG00000014922	SF3B5	99	95.294	Microcebus_murinus
ENSDARG00000016855	sf3b5	99	94.118	ENSMOCG00000001713	Sf3b5	99	94.118	Microtus_ochrogaster
ENSDARG00000016855	sf3b5	100	96.512	ENSMMOG00000007956	sf3b5	100	96.512	Mola_mola
ENSDARG00000016855	sf3b5	99	95.294	ENSMODG00000023291	SF3B5	83	95.294	Monodelphis_domestica
ENSDARG00000016855	sf3b5	91	92.593	ENSMALG00000020357	sf3b5	99	92.593	Monopterus_albus
ENSDARG00000016855	sf3b5	99	94.118	MGP_CAROLIEiJ_G0015120	Sf3b5	99	94.118	Mus_caroli
ENSDARG00000016855	sf3b5	99	94.118	ENSMUSG00000078348	Sf3b5	99	94.118	Mus_musculus
ENSDARG00000016855	sf3b5	99	94.118	MGP_PahariEiJ_G0023739	Sf3b5	99	94.118	Mus_pahari
ENSDARG00000016855	sf3b5	99	94.118	MGP_SPRETEiJ_G0015928	Sf3b5	99	94.118	Mus_spretus
ENSDARG00000016855	sf3b5	99	95.294	ENSMPUG00000018379	SF3B5	99	95.294	Mustela_putorius_furo
ENSDARG00000016855	sf3b5	99	90.588	ENSMLUG00000010802	-	99	90.588	Myotis_lucifugus
ENSDARG00000016855	sf3b5	93	91.250	ENSMLUG00000025546	-	93	91.250	Myotis_lucifugus
ENSDARG00000016855	sf3b5	99	95.294	ENSMLUG00000028504	-	99	95.294	Myotis_lucifugus
ENSDARG00000016855	sf3b5	99	95.294	ENSNGAG00000010732	Sf3b5	99	95.294	Nannospalax_galili
ENSDARG00000016855	sf3b5	100	96.512	ENSNBRG00000014383	sf3b5	100	96.512	Neolamprologus_brichardi
ENSDARG00000016855	sf3b5	99	95.294	ENSNLEG00000019307	SF3B5	99	95.294	Nomascus_leucogenys
ENSDARG00000016855	sf3b5	99	95.294	ENSMEUG00000005445	-	99	95.294	Notamacropus_eugenii
ENSDARG00000016855	sf3b5	99	95.294	ENSMEUG00000005440	-	99	95.294	Notamacropus_eugenii
ENSDARG00000016855	sf3b5	99	94.118	ENSOPRG00000015107	SF3B5	99	94.118	Ochotona_princeps
ENSDARG00000016855	sf3b5	99	95.294	ENSODEG00000019507	SF3B5	99	95.294	Octodon_degus
ENSDARG00000016855	sf3b5	100	96.512	ENSONIG00000020725	sf3b5	100	96.512	Oreochromis_niloticus
ENSDARG00000016855	sf3b5	67	96.552	ENSOANG00000015301	SF3B5	95	96.552	Ornithorhynchus_anatinus
ENSDARG00000016855	sf3b5	99	95.294	ENSOCUG00000008752	SF3B5	99	95.294	Oryctolagus_cuniculus
ENSDARG00000016855	sf3b5	100	95.349	ENSORLG00000004925	sf3b5	100	95.349	Oryzias_latipes
ENSDARG00000016855	sf3b5	100	95.349	ENSORLG00020011625	sf3b5	100	95.349	Oryzias_latipes_hni
ENSDARG00000016855	sf3b5	100	95.349	ENSORLG00015017061	sf3b5	100	95.349	Oryzias_latipes_hsok
ENSDARG00000016855	sf3b5	100	95.349	ENSOMEG00000010620	sf3b5	100	95.349	Oryzias_melastigma
ENSDARG00000016855	sf3b5	99	95.294	ENSOGAG00000012152	SF3B5	99	95.294	Otolemur_garnettii
ENSDARG00000016855	sf3b5	99	91.765	ENSOARG00000002617	SF3B5	99	91.765	Ovis_aries
ENSDARG00000016855	sf3b5	92	94.937	ENSOARG00000019486	-	95	94.937	Ovis_aries
ENSDARG00000016855	sf3b5	99	95.294	ENSPPAG00000012940	SF3B5	99	95.294	Pan_paniscus
ENSDARG00000016855	sf3b5	99	95.294	ENSPPRG00000021262	SF3B5	99	95.294	Panthera_pardus
ENSDARG00000016855	sf3b5	99	95.294	ENSPTIG00000001952	SF3B5	99	95.294	Panthera_tigris_altaica
ENSDARG00000016855	sf3b5	99	95.294	ENSPTRG00000018676	SF3B5	99	95.294	Pan_troglodytes
ENSDARG00000016855	sf3b5	99	95.294	ENSPANG00000034242	SF3B5	99	95.294	Papio_anubis
ENSDARG00000016855	sf3b5	100	94.186	ENSPKIG00000006057	sf3b5	100	94.186	Paramormyrops_kingsleyae
ENSDARG00000016855	sf3b5	100	94.186	ENSPSIG00000001262	SF3B5	100	94.186	Pelodiscus_sinensis
ENSDARG00000016855	sf3b5	100	94.186	ENSPMGG00000014804	sf3b5	100	94.186	Periophthalmus_magnuspinnatus
ENSDARG00000016855	sf3b5	99	94.118	ENSPEMG00000012931	Sf3b5	99	94.118	Peromyscus_maniculatus_bairdii
ENSDARG00000016855	sf3b5	100	90.698	ENSPMAG00000010296	sf3b5	100	90.698	Petromyzon_marinus
ENSDARG00000016855	sf3b5	93	96.250	ENSPCIG00000011344	-	78	96.250	Phascolarctos_cinereus
ENSDARG00000016855	sf3b5	99	75.294	ENSPCIG00000025007	-	99	75.294	Phascolarctos_cinereus
ENSDARG00000016855	sf3b5	100	95.349	ENSPFOG00000019994	sf3b5	100	95.349	Poecilia_formosa
ENSDARG00000016855	sf3b5	100	95.349	ENSPLAG00000008412	sf3b5	100	95.349	Poecilia_latipinna
ENSDARG00000016855	sf3b5	100	95.349	ENSPMEG00000020050	sf3b5	100	95.349	Poecilia_mexicana
ENSDARG00000016855	sf3b5	100	95.349	ENSPREG00000009242	sf3b5	100	95.349	Poecilia_reticulata
ENSDARG00000016855	sf3b5	99	95.294	ENSPPYG00000017068	SF3B5	99	95.294	Pongo_abelii
ENSDARG00000016855	sf3b5	99	95.294	ENSPCAG00000009332	SF3B5	99	95.294	Procavia_capensis
ENSDARG00000016855	sf3b5	99	95.294	ENSPCOG00000013754	SF3B5	99	95.294	Propithecus_coquereli
ENSDARG00000016855	sf3b5	56	95.833	ENSPVAG00000002820	SF3B5	100	95.833	Pteropus_vampyrus
ENSDARG00000016855	sf3b5	100	96.512	ENSPNYG00000002075	sf3b5	100	96.512	Pundamilia_nyererei
ENSDARG00000016855	sf3b5	100	96.512	ENSPNAG00000004942	sf3b5	100	96.512	Pygocentrus_nattereri
ENSDARG00000016855	sf3b5	99	94.118	ENSRNOG00000014908	Sf3b5	99	94.118	Rattus_norvegicus
ENSDARG00000016855	sf3b5	99	95.294	ENSRBIG00000006301	SF3B5	99	95.294	Rhinopithecus_bieti
ENSDARG00000016855	sf3b5	99	95.294	ENSRROG00000037067	SF3B5	99	95.294	Rhinopithecus_roxellana
ENSDARG00000016855	sf3b5	99	95.294	ENSSBOG00000006122	SF3B5	99	95.294	Saimiri_boliviensis_boliviensis
ENSDARG00000016855	sf3b5	99	94.118	ENSSHAG00000015670	SF3B5	99	94.118	Sarcophilus_harrisii
ENSDARG00000016855	sf3b5	100	97.674	ENSSFOG00015015767	sf3b5	100	97.674	Scleropages_formosus
ENSDARG00000016855	sf3b5	100	94.186	ENSSMAG00000018852	sf3b5	100	94.186	Scophthalmus_maximus
ENSDARG00000016855	sf3b5	100	95.349	ENSSDUG00000018161	sf3b5	100	95.349	Seriola_dumerili
ENSDARG00000016855	sf3b5	100	95.349	ENSSLDG00000014547	sf3b5	100	95.349	Seriola_lalandi_dorsalis
ENSDARG00000016855	sf3b5	99	95.294	ENSSARG00000007820	SF3B5	99	95.294	Sorex_araneus
ENSDARG00000016855	sf3b5	100	96.512	ENSSPAG00000017371	-	100	96.512	Stegastes_partitus
ENSDARG00000016855	sf3b5	100	96.512	ENSSPAG00000009244	sf3b5	100	96.512	Stegastes_partitus
ENSDARG00000016855	sf3b5	99	95.294	ENSSSCG00000035578	SF3B5	99	95.294	Sus_scrofa
ENSDARG00000016855	sf3b5	100	93.023	ENSTGUG00000010810	SF3B5	100	93.023	Taeniopygia_guttata
ENSDARG00000016855	sf3b5	100	93.023	ENSTRUG00000005577	sf3b5	100	93.023	Takifugu_rubripes
ENSDARG00000016855	sf3b5	100	93.023	ENSTNIG00000001265	sf3b5	100	93.023	Tetraodon_nigroviridis
ENSDARG00000016855	sf3b5	99	96.471	ENSTBEG00000003072	SF3B5	99	96.471	Tupaia_belangeri
ENSDARG00000016855	sf3b5	99	95.294	ENSTTRG00000008817	SF3B5	99	95.294	Tursiops_truncatus
ENSDARG00000016855	sf3b5	99	95.294	ENSUAMG00000027296	SF3B5	99	95.294	Ursus_americanus
ENSDARG00000016855	sf3b5	99	95.294	ENSUMAG00000005448	SF3B5	99	95.294	Ursus_maritimus
ENSDARG00000016855	sf3b5	99	95.294	ENSVPAG00000003826	SF3B5	99	95.294	Vicugna_pacos
ENSDARG00000016855	sf3b5	99	95.294	ENSVVUG00000004703	SF3B5	99	95.294	Vulpes_vulpes
ENSDARG00000016855	sf3b5	100	93.023	ENSXETG00000021409	sf3b5	100	93.023	Xenopus_tropicalis
ENSDARG00000016855	sf3b5	100	95.349	ENSXMAG00000019971	sf3b5	100	95.349	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0071011	precatalytic spliceosome	-	IEA	Component