EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000017038 (Gene tree)
Gene ID: 557059
Gene Symbol: zgc:152670
Alias: si:ch211-265g22.3
Full Name: zgc:152670
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 14471 bases
Position: chr2:44348473-44362943
Accession: ZDB-GENE-060929-954
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000128836	2OG-FeII_Oxy	PF03171.20	2.5e-08	1	1
ENSDARP00000088918	2OG-FeII_Oxy	PF03171.20	2.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000098146	-	2890	XM_021480486	ENSDARP00000088918	490 (aa)	XP_021336161	Z4YHZ5
ENSDART00000157037	-	528	-	-	- (aa)	-	-
ENSDART00000153836	-	493	-	-	- (aa)	-	-
ENSDART00000155166	-	2377	-	ENSDARP00000128836	314 (aa)	-	X1WF32

Gene Model

Click here to download ENSDARG00000017038's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000017038's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000017038	zgc:152670	90	38.333	ENSDARG00000094609	si:ch73-68b22.2	90	38.987
ENSDARG00000017038	zgc:152670	93	54.902	ENSDARG00000071082	p4ha1b	96	40.232
ENSDARG00000017038	zgc:152670	93	54.741	ENSDARG00000033537	p4ha1a	91	54.741
ENSDARG00000017038	zgc:152670	99	49.057	ENSDARG00000010085	p4ha2	99	39.665

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000017038	zgc:152670	95	47.973	ENSG00000122884	P4HA1	97	39.923	Homo_sapiens
ENSDARG00000017038	zgc:152670	93	51.282	ENSAPOG00000005170	p4ha1b	96	38.403	Acanthochromis_polyacanthus
ENSDARG00000017038	zgc:152670	95	53.846	ENSAMEG00000017009	P4HA1	97	39.539	Ailuropoda_melanoleuca
ENSDARG00000017038	zgc:152670	98	52.564	ENSACIG00000007255	p4ha1b	99	38.168	Amphilophus_citrinellus
ENSDARG00000017038	zgc:152670	93	51.282	ENSAOCG00000001647	p4ha1b	95	38.740	Amphiprion_ocellaris
ENSDARG00000017038	zgc:152670	93	52.863	ENSAPEG00000010402	-	96	39.258	Amphiprion_percula
ENSDARG00000017038	zgc:152670	93	51.282	ENSAPEG00000005243	p4ha1b	95	38.740	Amphiprion_percula
ENSDARG00000017038	zgc:152670	93	52.991	ENSATEG00000009272	p4ha1b	99	37.500	Anabas_testudineus
ENSDARG00000017038	zgc:152670	93	54.274	ENSAPLG00000009284	P4HA1	99	39.417	Anas_platyrhynchos
ENSDARG00000017038	zgc:152670	93	53.846	ENSACAG00000000564	P4HA1	96	39.114	Anolis_carolinensis
ENSDARG00000017038	zgc:152670	95	47.635	ENSANAG00000024545	P4HA1	84	54.472	Aotus_nancymaae
ENSDARG00000017038	zgc:152670	93	52.564	ENSACLG00000021556	p4ha1b	84	52.564	Astatotilapia_calliptera
ENSDARG00000017038	zgc:152670	93	54.701	ENSAMXG00000011123	p4ha1b	96	38.140	Astyanax_mexicanus
ENSDARG00000017038	zgc:152670	95	54.274	ENSBTAG00000032996	P4HA1	97	39.731	Bos_taurus
ENSDARG00000017038	zgc:152670	95	54.274	ENSCJAG00000007429	P4HA1	92	54.274	Callithrix_jacchus
ENSDARG00000017038	zgc:152670	95	54.274	ENSCAFG00000014573	P4HA1	97	39.923	Canis_familiaris
ENSDARG00000017038	zgc:152670	94	54.274	ENSCAFG00020023993	P4HA1	98	40.039	Canis_lupus_dingo
ENSDARG00000017038	zgc:152670	95	54.274	ENSCHIG00000013957	P4HA1	97	39.731	Capra_hircus
ENSDARG00000017038	zgc:152670	95	47.973	ENSTSYG00000004004	P4HA1	97	54.274	Carlito_syrichta
ENSDARG00000017038	zgc:152670	93	54.274	ENSCPOG00000015701	P4HA1	83	54.472	Cavia_porcellus
ENSDARG00000017038	zgc:152670	95	47.973	ENSCATG00000029618	P4HA1	93	50.000	Cercocebus_atys
ENSDARG00000017038	zgc:152670	93	47.973	ENSCLAG00000017260	P4HA1	91	50.000	Chinchilla_lanigera
ENSDARG00000017038	zgc:152670	95	47.973	ENSCSAG00000008626	P4HA1	97	39.923	Chlorocebus_sabaeus
ENSDARG00000017038	zgc:152670	100	54.274	ENSCPBG00000007933	P4HA1	100	38.519	Chrysemys_picta_bellii
ENSDARG00000017038	zgc:152670	95	47.973	ENSCANG00000033147	P4HA1	93	50.000	Colobus_angolensis_palliatus
ENSDARG00000017038	zgc:152670	93	54.274	ENSCGRG00001007006	P4ha1	83	54.472	Cricetulus_griseus_chok1gshd
ENSDARG00000017038	zgc:152670	93	54.274	ENSCGRG00000009371	P4ha1	83	54.472	Cricetulus_griseus_crigri
ENSDARG00000017038	zgc:152670	93	46.565	ENSCSEG00000004939	p4ha1b	96	37.739	Cynoglossus_semilaevis
ENSDARG00000017038	zgc:152670	98	51.709	ENSCVAG00000016433	p4ha1b	95	47.388	Cyprinodon_variegatus
ENSDARG00000017038	zgc:152670	97	53.017	ENSDNOG00000013665	P4HA1	93	38.941	Dasypus_novemcinctus
ENSDARG00000017038	zgc:152670	95	47.619	ENSDORG00000003405	P4ha1	84	54.472	Dipodomys_ordii
ENSDARG00000017038	zgc:152670	99	52.564	ENSEBUG00000005379	p4ha1b	99	39.163	Eptatretus_burgeri
ENSDARG00000017038	zgc:152670	98	50.000	ENSEASG00005016606	P4HA1	95	50.000	Equus_asinus_asinus
ENSDARG00000017038	zgc:152670	92	48.249	ENSECAG00000012496	P4HA1	99	39.882	Equus_caballus
ENSDARG00000017038	zgc:152670	98	45.726	ENSEEUG00000005542	P4HA1	73	46.341	Erinaceus_europaeus
ENSDARG00000017038	zgc:152670	93	50.193	ENSELUG00000005913	p4ha1b	99	38.953	Esox_lucius
ENSDARG00000017038	zgc:152670	95	54.274	ENSFCAG00000018673	P4HA1	97	39.731	Felis_catus
ENSDARG00000017038	zgc:152670	100	54.274	ENSFALG00000012773	P4HA1	100	38.619	Ficedula_albicollis
ENSDARG00000017038	zgc:152670	96	38.728	ENSFDAG00000007094	P4HA1	96	39.181	Fukomys_damarensis
ENSDARG00000017038	zgc:152670	93	53.419	ENSFHEG00000022856	p4ha1b	95	38.023	Fundulus_heteroclitus
ENSDARG00000017038	zgc:152670	94	37.476	ENSGMOG00000018948	p4ha1b	99	37.476	Gadus_morhua
ENSDARG00000017038	zgc:152670	95	54.274	ENSGALG00000004325	P4HA1	98	39.382	Gallus_gallus
ENSDARG00000017038	zgc:152670	93	53.419	ENSGAFG00000019818	p4ha1b	95	38.506	Gambusia_affinis
ENSDARG00000017038	zgc:152670	93	48.669	ENSGACG00000010233	p4ha1b	99	38.519	Gasterosteus_aculeatus
ENSDARG00000017038	zgc:152670	95	47.973	ENSGGOG00000015551	P4HA1	93	50.000	Gorilla_gorilla
ENSDARG00000017038	zgc:152670	93	52.137	ENSHBUG00000015524	p4ha1b	95	37.595	Haplochromis_burtoni
ENSDARG00000017038	zgc:152670	93	54.274	ENSHGLG00000011764	P4HA1	83	54.472	Heterocephalus_glaber_female
ENSDARG00000017038	zgc:152670	94	38.058	ENSHCOG00000017152	p4ha1b	99	38.058	Hippocampus_comes
ENSDARG00000017038	zgc:152670	93	54.274	ENSIPUG00000015157	P4HA1	96	39.731	Ictalurus_punctatus
ENSDARG00000017038	zgc:152670	95	47.635	ENSSTOG00000027062	P4HA1	84	54.472	Ictidomys_tridecemlineatus
ENSDARG00000017038	zgc:152670	94	53.879	ENSJJAG00000004232	P4ha1	84	54.098	Jaculus_jaculus
ENSDARG00000017038	zgc:152670	93	52.564	ENSKMAG00000001588	p4ha1b	96	38.023	Kryptolebias_marmoratus
ENSDARG00000017038	zgc:152670	93	51.293	ENSLBEG00000018911	p4ha1b	95	51.293	Labrus_bergylta
ENSDARG00000017038	zgc:152670	92	53.478	ENSLACG00000010202	P4HA1	99	38.868	Latimeria_chalumnae
ENSDARG00000017038	zgc:152670	93	54.310	ENSLOCG00000008546	p4ha1b	94	40.310	Lepisosteus_oculatus
ENSDARG00000017038	zgc:152670	95	51.362	ENSLAFG00000002652	P4HA1	97	39.923	Loxodonta_africana
ENSDARG00000017038	zgc:152670	95	47.973	ENSMFAG00000030507	P4HA1	93	50.000	Macaca_fascicularis
ENSDARG00000017038	zgc:152670	95	47.973	ENSMMUG00000011274	P4HA1	93	50.000	Macaca_mulatta
ENSDARG00000017038	zgc:152670	95	45.085	ENSMNEG00000011433	P4HA1	95	38.353	Macaca_nemestrina
ENSDARG00000017038	zgc:152670	78	45.788	ENSMLEG00000043338	P4HA1	99	54.321	Mandrillus_leucophaeus
ENSDARG00000017038	zgc:152670	93	53.419	ENSMAMG00000015854	p4ha1b	96	38.772	Mastacembelus_armatus
ENSDARG00000017038	zgc:152670	93	52.137	ENSMZEG00005027421	p4ha1b	95	37.595	Maylandia_zebra
ENSDARG00000017038	zgc:152670	95	53.846	ENSMGAG00000005554	P4HA1	99	39.571	Meleagris_gallopavo
ENSDARG00000017038	zgc:152670	85	39.686	ENSMAUG00000011056	P4ha1	87	39.686	Mesocricetus_auratus
ENSDARG00000017038	zgc:152670	95	47.973	ENSMICG00000031365	P4HA1	93	50.000	Microcebus_murinus
ENSDARG00000017038	zgc:152670	93	54.274	ENSMOCG00000017531	P4ha1	83	54.472	Microtus_ochrogaster
ENSDARG00000017038	zgc:152670	93	52.155	ENSMMOG00000008022	p4ha1b	96	38.580	Mola_mola
ENSDARG00000017038	zgc:152670	95	54.274	ENSMODG00000000121	P4HA1	97	39.504	Monodelphis_domestica
ENSDARG00000017038	zgc:152670	93	52.991	ENSMALG00000019674	p4ha1b	99	37.385	Monopterus_albus
ENSDARG00000017038	zgc:152670	95	54.701	MGP_CAROLIEiJ_G0015342	P4ha1	84	54.878	Mus_caroli
ENSDARG00000017038	zgc:152670	95	54.274	ENSMUSG00000019916	P4ha1	84	54.472	Mus_musculus
ENSDARG00000017038	zgc:152670	95	54.274	MGP_PahariEiJ_G0030758	P4ha1	84	54.274	Mus_pahari
ENSDARG00000017038	zgc:152670	95	54.274	MGP_SPRETEiJ_G0016153	P4ha1	84	54.472	Mus_spretus
ENSDARG00000017038	zgc:152670	95	47.973	ENSMPUG00000003940	P4HA1	97	39.731	Mustela_putorius_furo
ENSDARG00000017038	zgc:152670	95	47.973	ENSMLUG00000006548	P4HA1	97	39.731	Myotis_lucifugus
ENSDARG00000017038	zgc:152670	93	54.274	ENSNGAG00000014487	P4ha1	83	54.472	Nannospalax_galili
ENSDARG00000017038	zgc:152670	93	53.419	ENSNBRG00000014791	p4ha1b	96	39.293	Neolamprologus_brichardi
ENSDARG00000017038	zgc:152670	95	47.973	ENSNLEG00000035416	P4HA1	99	53.527	Nomascus_leucogenys
ENSDARG00000017038	zgc:152670	62	51.185	ENSMEUG00000010326	P4HA1	70	40.166	Notamacropus_eugenii
ENSDARG00000017038	zgc:152670	87	39.112	ENSOPRG00000000990	P4HA1	87	39.440	Ochotona_princeps
ENSDARG00000017038	zgc:152670	93	47.973	ENSODEG00000015164	P4HA1	91	50.000	Octodon_degus
ENSDARG00000017038	zgc:152670	93	52.564	ENSONIG00000000737	p4ha1b	85	37.643	Oreochromis_niloticus
ENSDARG00000017038	zgc:152670	86	46.405	ENSOANG00000001125	-	97	42.105	Ornithorhynchus_anatinus
ENSDARG00000017038	zgc:152670	95	47.973	ENSOCUG00000009739	P4HA1	97	39.731	Oryctolagus_cuniculus
ENSDARG00000017038	zgc:152670	93	52.991	ENSORLG00000005147	p4ha1b	100	38.566	Oryzias_latipes
ENSDARG00000017038	zgc:152670	93	53.846	ENSORLG00020010911	p4ha1b	95	39.272	Oryzias_latipes_hni
ENSDARG00000017038	zgc:152670	91	39.122	ENSORLG00015016175	p4ha1b	95	41.612	Oryzias_latipes_hsok
ENSDARG00000017038	zgc:152670	93	52.564	ENSOMEG00000009962	p4ha1b	96	39.771	Oryzias_melastigma
ENSDARG00000017038	zgc:152670	95	47.635	ENSOGAG00000003483	P4HA1	97	39.847	Otolemur_garnettii
ENSDARG00000017038	zgc:152670	95	54.274	ENSOARG00000007348	P4HA1	97	39.731	Ovis_aries
ENSDARG00000017038	zgc:152670	95	47.973	ENSPPAG00000030135	P4HA1	99	54.321	Pan_paniscus
ENSDARG00000017038	zgc:152670	95	48.311	ENSPPRG00000002655	P4HA1	97	39.731	Panthera_pardus
ENSDARG00000017038	zgc:152670	95	48.311	ENSPTIG00000007711	P4HA1	97	39.731	Panthera_tigris_altaica
ENSDARG00000017038	zgc:152670	95	46.897	ENSPTRG00000002619	P4HA1	93	48.881	Pan_troglodytes
ENSDARG00000017038	zgc:152670	95	47.973	ENSPANG00000022355	P4HA1	93	50.000	Papio_anubis
ENSDARG00000017038	zgc:152670	96	52.991	ENSPKIG00000000438	p4ha1b	98	38.983	Paramormyrops_kingsleyae
ENSDARG00000017038	zgc:152670	95	53.846	ENSPSIG00000016298	P4HA1	100	38.519	Pelodiscus_sinensis
ENSDARG00000017038	zgc:152670	93	49.035	ENSPMGG00000007593	p4ha1b	99	36.430	Periophthalmus_magnuspinnatus
ENSDARG00000017038	zgc:152670	93	54.701	ENSPEMG00000006561	P4ha1	83	54.701	Peromyscus_maniculatus_bairdii
ENSDARG00000017038	zgc:152670	95	54.701	ENSPCIG00000018768	P4HA1	98	39.504	Phascolarctos_cinereus
ENSDARG00000017038	zgc:152670	93	52.564	ENSPFOG00000018574	p4ha1b	95	38.241	Poecilia_formosa
ENSDARG00000017038	zgc:152670	93	52.991	ENSPLAG00000012628	p4ha1b	84	52.991	Poecilia_latipinna
ENSDARG00000017038	zgc:152670	93	52.991	ENSPMEG00000024082	p4ha1b	95	38.432	Poecilia_mexicana
ENSDARG00000017038	zgc:152670	93	53.419	ENSPREG00000010003	p4ha1b	95	38.623	Poecilia_reticulata
ENSDARG00000017038	zgc:152670	95	47.973	ENSPPYG00000002348	P4HA1	97	39.923	Pongo_abelii
ENSDARG00000017038	zgc:152670	69	53.846	ENSPCOG00000017553	P4HA1	99	53.909	Propithecus_coquereli
ENSDARG00000017038	zgc:152670	97	36.084	ENSPVAG00000012989	P4HA1	98	35.893	Pteropus_vampyrus
ENSDARG00000017038	zgc:152670	93	52.564	ENSPNYG00000002443	p4ha1b	95	37.786	Pundamilia_nyererei
ENSDARG00000017038	zgc:152670	93	55.128	ENSPNAG00000023149	p4ha1b	96	39.089	Pygocentrus_nattereri
ENSDARG00000017038	zgc:152670	93	54.274	ENSRNOG00000050655	P4ha1	96	40.194	Rattus_norvegicus
ENSDARG00000017038	zgc:152670	80	53.333	ENSRBIG00000035304	P4HA1	97	34.940	Rhinopithecus_bieti
ENSDARG00000017038	zgc:152670	95	47.973	ENSRROG00000044078	P4HA1	93	50.000	Rhinopithecus_roxellana
ENSDARG00000017038	zgc:152670	69	53.846	ENSSHAG00000008056	P4HA1	100	41.860	Sarcophilus_harrisii
ENSDARG00000017038	zgc:152670	95	54.274	ENSSFOG00015009176	p4ha1b	100	39.535	Scleropages_formosus
ENSDARG00000017038	zgc:152670	93	52.586	ENSSMAG00000019199	p4ha1b	96	38.077	Scophthalmus_maximus
ENSDARG00000017038	zgc:152670	93	51.282	ENSSDUG00000016587	p4ha1b	95	38.123	Seriola_dumerili
ENSDARG00000017038	zgc:152670	93	51.709	ENSSLDG00000016261	p4ha1b	95	37.548	Seriola_lalandi_dorsalis
ENSDARG00000017038	zgc:152670	95	50.000	ENSSARG00000003275	P4HA1	97	37.885	Sorex_araneus
ENSDARG00000017038	zgc:152670	95	54.274	ENSSPUG00000002624	P4HA1	99	38.910	Sphenodon_punctatus
ENSDARG00000017038	zgc:152670	83	39.316	ENSSPAG00000011193	p4ha1b	99	39.316	Stegastes_partitus
ENSDARG00000017038	zgc:152670	95	49.270	ENSSSCG00000010292	P4HA1	97	39.539	Sus_scrofa
ENSDARG00000017038	zgc:152670	95	53.846	ENSTGUG00000004364	-	97	39.189	Taeniopygia_guttata
ENSDARG00000017038	zgc:152670	93	53.419	ENSTRUG00000004081	p4ha1b	96	39.048	Takifugu_rubripes
ENSDARG00000017038	zgc:152670	93	53.419	ENSTNIG00000017021	p4ha1b	96	40.194	Tetraodon_nigroviridis
ENSDARG00000017038	zgc:152670	95	48.311	ENSTTRG00000009782	P4HA1	97	39.038	Tursiops_truncatus
ENSDARG00000017038	zgc:152670	69	54.274	ENSUAMG00000011694	-	99	54.321	Ursus_americanus
ENSDARG00000017038	zgc:152670	95	47.973	ENSUMAG00000009024	P4HA1	97	39.731	Ursus_maritimus
ENSDARG00000017038	zgc:152670	95	50.000	ENSVPAG00000007253	P4HA1	86	46.462	Vicugna_pacos
ENSDARG00000017038	zgc:152670	95	54.274	ENSVVUG00000022660	P4HA1	97	39.923	Vulpes_vulpes
ENSDARG00000017038	zgc:152670	96	52.083	ENSXETG00000006154	p4ha1	97	39.006	Xenopus_tropicalis
ENSDARG00000017038	zgc:152670	93	53.846	ENSXCOG00000010262	p4ha1b	98	39.106	Xiphophorus_couchianus
ENSDARG00000017038	zgc:152670	93	53.419	ENSXMAG00000003889	p4ha1b	95	39.423	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004656	procollagen-proline 4-dioxygenase activity	21873635.	IBA	Function
GO:0004656	procollagen-proline 4-dioxygenase activity	-	IEA	Function
GO:0005506	iron ion binding	-	IEA	Function
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	-	IEA	Function
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	-	IEA	Function
GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	21873635.	IBA	Process
GO:0031418	L-ascorbic acid binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0055114	oxidation-reduction process	-	IEA	Process