EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000017244 (Gene tree)
Gene ID: 570753
Gene Symbol: chd6
Alias: si:dkey-6e2.3|zmp:0000000556
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 90816 bases
Position: chr6:51575924-51666739
Accession: ZDB-GENE-130530-559
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000032370	ResIII	PF04851.15	6.8e-07	1	1
ENSDARP00000128062	ResIII	PF04851.15	6.9e-07	1	1
ENSDARP00000128062	BRK	PF07533.16	2.8e-18	1	1
ENSDARP00000032370	BRK	PF07533.16	2.9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000028607	-	8853	XM_021477302	ENSDARP00000032370	2951 (aa)	XP_021332977	F1QYR7
ENSDART00000155549	-	14177	XM_009302700	ENSDARP00000128062	2935 (aa)	XP_009300975	X1WCW5

Gene Model

Click here to download ENSDARG00000017244's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000017244's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000017244	chd6	71	66.253	ENSDARG00000075211	chd7	85	66.391
ENSDARG00000017244	chd6	72	64.369	ENSDARG00000074498	chd9	81	64.232
ENSDARG00000017244	chd6	53	58.969	ENSDARG00000075543	chd8	68	59.328

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000017244	chd6	79	73.678	ENSG00000124177	CHD6	99	84.496	Homo_sapiens
ENSDARG00000017244	chd6	92	69.832	ENSAPOG00000013736	chd6	86	70.729	Acanthochromis_polyacanthus
ENSDARG00000017244	chd6	81	72.482	ENSAMEG00000009496	CHD6	84	72.482	Ailuropoda_melanoleuca
ENSDARG00000017244	chd6	95	66.376	ENSATEG00000005608	chd6	84	70.069	Anabas_testudineus
ENSDARG00000017244	chd6	81	72.695	ENSAPLG00000015592	CHD6	84	73.461	Anas_platyrhynchos
ENSDARG00000017244	chd6	74	73.741	ENSACAG00000006842	CHD6	78	71.702	Anolis_carolinensis
ENSDARG00000017244	chd6	79	73.678	ENSANAG00000037548	CHD6	91	88.956	Aotus_nancymaae
ENSDARG00000017244	chd6	98	74.683	ENSAMXG00000009576	chd6	98	75.060	Astyanax_mexicanus
ENSDARG00000017244	chd6	80	73.286	ENSBTAG00000005733	CHD6	85	73.286	Bos_taurus
ENSDARG00000017244	chd6	79	73.738	ENSCJAG00000017920	CHD6	91	88.956	Callithrix_jacchus
ENSDARG00000017244	chd6	80	72.770	ENSCAFG00000009236	CHD6	84	72.770	Canis_familiaris
ENSDARG00000017244	chd6	80	72.625	ENSCAFG00020012906	CHD6	91	88.866	Canis_lupus_dingo
ENSDARG00000017244	chd6	80	73.210	ENSCHIG00000017606	CHD6	85	73.210	Capra_hircus
ENSDARG00000017244	chd6	64	79.622	ENSTSYG00000014635	CHD6	79	79.622	Carlito_syrichta
ENSDARG00000017244	chd6	79	72.983	ENSCPOG00000015641	CHD6	82	73.393	Cavia_porcellus
ENSDARG00000017244	chd6	79	73.678	ENSCCAG00000036828	CHD6	91	88.956	Cebus_capucinus
ENSDARG00000017244	chd6	79	73.482	ENSCATG00000039248	CHD6	91	88.956	Cercocebus_atys
ENSDARG00000017244	chd6	79	73.377	ENSCLAG00000013743	CHD6	82	73.377	Chinchilla_lanigera
ENSDARG00000017244	chd6	79	73.738	ENSCSAG00000013997	CHD6	82	73.738	Chlorocebus_sabaeus
ENSDARG00000017244	chd6	68	67.675	ENSCHOG00000012647	CHD6	74	68.267	Choloepus_hoffmanni
ENSDARG00000017244	chd6	74	78.898	ENSCPBG00000019382	CHD6	80	76.789	Chrysemys_picta_bellii
ENSDARG00000017244	chd6	79	73.678	ENSCANG00000043435	CHD6	91	88.956	Colobus_angolensis_palliatus
ENSDARG00000017244	chd6	79	73.137	ENSCGRG00001002694	Chd6	82	72.716	Cricetulus_griseus_chok1gshd
ENSDARG00000017244	chd6	76	76.478	ENSDNOG00000004176	CHD6	78	76.779	Dasypus_novemcinctus
ENSDARG00000017244	chd6	70	83.392	ENSEASG00005023433	CHD6	94	88.086	Equus_asinus_asinus
ENSDARG00000017244	chd6	79	73.461	ENSECAG00000011761	CHD6	82	73.461	Equus_caballus
ENSDARG00000017244	chd6	71	83.123	ENSELUG00000012309	chd6	96	83.123	Esox_lucius
ENSDARG00000017244	chd6	79	73.887	ENSFCAG00000003572	CHD6	82	73.887	Felis_catus
ENSDARG00000017244	chd6	75	77.543	ENSFALG00000012563	CHD6	82	73.542	Ficedula_albicollis
ENSDARG00000017244	chd6	79	73.458	ENSFDAG00000013791	CHD6	82	73.567	Fukomys_damarensis
ENSDARG00000017244	chd6	73	75.018	ENSGMOG00000011715	chd6	87	75.575	Gadus_morhua
ENSDARG00000017244	chd6	79	74.098	ENSGACG00000000037	chd6	89	73.755	Gasterosteus_aculeatus
ENSDARG00000017244	chd6	79	73.722	ENSGGOG00000013123	CHD6	91	88.956	Gorilla_gorilla
ENSDARG00000017244	chd6	90	70.895	ENSHBUG00000014701	chd6	84	70.258	Haplochromis_burtoni
ENSDARG00000017244	chd6	79	73.406	ENSHGLG00000004548	CHD6	82	73.406	Heterocephalus_glaber_female
ENSDARG00000017244	chd6	79	73.406	ENSHGLG00100006401	CHD6	82	73.406	Heterocephalus_glaber_male
ENSDARG00000017244	chd6	95	77.199	ENSIPUG00000003692	chd6	98	78.097	Ictalurus_punctatus
ENSDARG00000017244	chd6	79	73.482	ENSSTOG00000013382	CHD6	82	73.589	Ictidomys_tridecemlineatus
ENSDARG00000017244	chd6	79	73.488	ENSLACG00000010881	CHD6	87	68.587	Latimeria_chalumnae
ENSDARG00000017244	chd6	71	85.225	ENSLOCG00000007386	chd6	85	80.813	Lepisosteus_oculatus
ENSDARG00000017244	chd6	79	73.361	ENSLAFG00000012144	CHD6	83	73.643	Loxodonta_africana
ENSDARG00000017244	chd6	79	73.738	ENSMFAG00000032830	CHD6	91	88.956	Macaca_fascicularis
ENSDARG00000017244	chd6	79	73.738	ENSMMUG00000020458	CHD6	91	88.956	Macaca_mulatta
ENSDARG00000017244	chd6	79	73.738	ENSMNEG00000040847	CHD6	91	88.956	Macaca_nemestrina
ENSDARG00000017244	chd6	79	73.745	ENSMLEG00000031965	CHD6	91	88.956	Mandrillus_leucophaeus
ENSDARG00000017244	chd6	92	70.113	ENSMAMG00000013111	chd6	84	70.092	Mastacembelus_armatus
ENSDARG00000017244	chd6	75	75.376	ENSMGAG00000001121	CHD6	81	74.361	Meleagris_gallopavo
ENSDARG00000017244	chd6	79	73.668	ENSMICG00000016641	CHD6	91	88.956	Microcebus_murinus
ENSDARG00000017244	chd6	70	80.857	ENSMODG00000000720	-	79	80.913	Monodelphis_domestica
ENSDARG00000017244	chd6	79	72.902	MGP_CAROLIEiJ_G0024604	Chd6	99	77.341	Mus_caroli
ENSDARG00000017244	chd6	79	72.962	ENSMUSG00000057133	Chd6	99	77.425	Mus_musculus
ENSDARG00000017244	chd6	79	72.918	MGP_PahariEiJ_G0026048	Chd6	99	77.174	Mus_pahari
ENSDARG00000017244	chd6	79	72.962	MGP_SPRETEiJ_G0025526	Chd6	99	77.425	Mus_spretus
ENSDARG00000017244	chd6	81	72.482	ENSMPUG00000017695	CHD6	84	72.482	Mustela_putorius_furo
ENSDARG00000017244	chd6	80	73.397	ENSMLUG00000016247	CHD6	82	73.397	Myotis_lucifugus
ENSDARG00000017244	chd6	91	73.692	ENSNBRG00000013839	chd6	98	73.257	Neolamprologus_brichardi
ENSDARG00000017244	chd6	79	72.755	ENSNLEG00000006496	CHD6	82	72.595	Nomascus_leucogenys
ENSDARG00000017244	chd6	79	71.592	ENSOPRG00000013376	-	82	71.592	Ochotona_princeps
ENSDARG00000017244	chd6	76	80.880	ENSONIG00000000393	chd6	82	81.290	Oreochromis_niloticus
ENSDARG00000017244	chd6	77	69.283	ENSOANG00000014347	CHD6	75	69.339	Ornithorhynchus_anatinus
ENSDARG00000017244	chd6	79	73.329	ENSOCUG00000012394	CHD6	82	73.361	Oryctolagus_cuniculus
ENSDARG00000017244	chd6	92	67.302	ENSORLG00020021891	chd6	95	89.178	Oryzias_latipes_hni
ENSDARG00000017244	chd6	75	76.873	ENSOGAG00000002427	CHD6	82	73.691	Otolemur_garnettii
ENSDARG00000017244	chd6	80	72.575	ENSOARG00000002597	CHD6	85	72.575	Ovis_aries
ENSDARG00000017244	chd6	79	73.947	ENSPPRG00000014756	CHD6	82	73.947	Panthera_pardus
ENSDARG00000017244	chd6	79	73.767	ENSPTIG00000011094	CHD6	82	73.767	Panthera_tigris_altaica
ENSDARG00000017244	chd6	79	73.678	ENSPTRG00000013504	CHD6	91	88.956	Pan_troglodytes
ENSDARG00000017244	chd6	79	73.842	ENSPANG00000025554	CHD6	91	88.956	Papio_anubis
ENSDARG00000017244	chd6	92	74.613	ENSPKIG00000005578	chd6	99	64.389	Paramormyrops_kingsleyae
ENSDARG00000017244	chd6	76	78.958	ENSPMGG00000014877	chd6	89	78.958	Periophthalmus_magnuspinnatus
ENSDARG00000017244	chd6	80	74.036	ENSPCIG00000028037	CHD6	82	74.337	Phascolarctos_cinereus
ENSDARG00000017244	chd6	89	70.000	ENSPLAG00000003128	chd6	88	70.258	Poecilia_latipinna
ENSDARG00000017244	chd6	86	73.840	ENSPREG00000022653	chd6	99	88.645	Poecilia_reticulata
ENSDARG00000017244	chd6	79	73.678	ENSPPYG00000011016	CHD6	82	73.678	Pongo_abelii
ENSDARG00000017244	chd6	79	73.466	ENSPCOG00000001089	CHD6	91	88.755	Propithecus_coquereli
ENSDARG00000017244	chd6	91	75.610	ENSPNYG00000022516	chd6	97	75.050	Pundamilia_nyererei
ENSDARG00000017244	chd6	99	75.043	ENSPNAG00000012825	chd6	99	75.723	Pygocentrus_nattereri
ENSDARG00000017244	chd6	79	72.924	ENSRNOG00000016744	Chd6	82	72.924	Rattus_norvegicus
ENSDARG00000017244	chd6	79	73.742	ENSSBOG00000022089	CHD6	91	88.956	Saimiri_boliviensis_boliviensis
ENSDARG00000017244	chd6	75	78.065	ENSSHAG00000017072	CHD6	82	74.244	Sarcophilus_harrisii
ENSDARG00000017244	chd6	94	76.581	ENSSFOG00015012920	chd6	97	76.935	Scleropages_formosus
ENSDARG00000017244	chd6	52	94.737	ENSSARG00000002615	-	56	94.737	Sorex_araneus
ENSDARG00000017244	chd6	80	73.908	ENSSSCG00000007360	CHD6	82	73.908	Sus_scrofa
ENSDARG00000017244	chd6	75	77.536	ENSTGUG00000003179	CHD6	82	76.312	Taeniopygia_guttata
ENSDARG00000017244	chd6	84	77.335	ENSTNIG00000017487	chd6	100	77.799	Tetraodon_nigroviridis
ENSDARG00000017244	chd6	78	74.157	ENSTTRG00000013438	CHD6	80	74.157	Tursiops_truncatus
ENSDARG00000017244	chd6	80	71.150	ENSUAMG00000024036	CHD6	91	88.866	Ursus_americanus
ENSDARG00000017244	chd6	80	72.609	ENSUMAG00000002017	CHD6	91	88.866	Ursus_maritimus
ENSDARG00000017244	chd6	73	74.576	ENSVPAG00000007941	CHD6	76	74.576	Vicugna_pacos
ENSDARG00000017244	chd6	80	72.770	ENSVVUG00000029164	CHD6	84	72.770	Vulpes_vulpes
ENSDARG00000017244	chd6	73	71.516	ENSXETG00000021445	chd6	78	69.909	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0016817	hydrolase activity, acting on acid anhydrides	-	IEA	Function