EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000017605 (Gene tree)
Gene ID: 415238
Gene Symbol: rpp40
Alias: Rpp40|rpp40l|zgc:86704
Full Name: ribonuclease P/MRP 40 subunit
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 7184 bases
Position: chr2:23613040-23620223
Accession: ZDB-GENE-040625-161
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000017777	Ribonuc_P_40	PF08584.11	4.6e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000146839	-	1377	-	-	- (aa)	-	-
ENSDART00000026694	-	1352	-	ENSDARP00000017777	361 (aa)	-	Q6IQM3

Gene Model

Click here to download ENSDARG00000017605's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG
dre03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000017605's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000017605	rpp40	99	50.000	ENSG00000124787	RPP40	99	49.502	Homo_sapiens
ENSDARG00000017605	rpp40	94	39.706	ENSAPOG00000008660	rpp40	98	39.706	Acanthochromis_polyacanthus
ENSDARG00000017605	rpp40	99	49.441	ENSAMEG00000012938	RPP40	98	49.441	Ailuropoda_melanoleuca
ENSDARG00000017605	rpp40	99	47.486	ENSACIG00000003617	rpp40	99	47.486	Amphilophus_citrinellus
ENSDARG00000017605	rpp40	100	48.753	ENSAOCG00000011846	rpp40	100	48.753	Amphiprion_ocellaris
ENSDARG00000017605	rpp40	100	48.753	ENSAPEG00000001322	rpp40	100	48.753	Amphiprion_percula
ENSDARG00000017605	rpp40	100	48.485	ENSATEG00000006584	rpp40	100	48.485	Anabas_testudineus
ENSDARG00000017605	rpp40	84	50.987	ENSAPLG00000005691	RPP40	100	50.987	Anas_platyrhynchos
ENSDARG00000017605	rpp40	99	48.179	ENSACAG00000006550	RPP40	87	48.179	Anolis_carolinensis
ENSDARG00000017605	rpp40	99	48.468	ENSANAG00000029246	RPP40	99	48.468	Aotus_nancymaae
ENSDARG00000017605	rpp40	98	48.451	ENSACLG00000015883	rpp40	96	48.451	Astatotilapia_calliptera
ENSDARG00000017605	rpp40	100	63.712	ENSAMXG00000001755	rpp40	100	63.712	Astyanax_mexicanus
ENSDARG00000017605	rpp40	99	50.975	ENSBTAG00000003332	RPP40	99	50.975	Bos_taurus
ENSDARG00000017605	rpp40	99	49.304	ENSCJAG00000021373	RPP40	99	49.304	Callithrix_jacchus
ENSDARG00000017605	rpp40	99	49.582	ENSCAFG00000009435	RPP40	99	49.582	Canis_familiaris
ENSDARG00000017605	rpp40	99	49.582	ENSCAFG00020013380	RPP40	99	49.582	Canis_lupus_dingo
ENSDARG00000017605	rpp40	99	50.139	ENSCHIG00000016849	RPP40	99	50.139	Capra_hircus
ENSDARG00000017605	rpp40	99	49.441	ENSTSYG00000032857	RPP40	99	49.169	Carlito_syrichta
ENSDARG00000017605	rpp40	90	44.308	ENSCAPG00000004957	RPP40	97	44.308	Cavia_aperea
ENSDARG00000017605	rpp40	99	50.000	ENSCPOG00000005855	RPP40	98	50.000	Cavia_porcellus
ENSDARG00000017605	rpp40	99	49.861	ENSCCAG00000019809	RPP40	99	49.861	Cebus_capucinus
ENSDARG00000017605	rpp40	99	50.000	ENSCATG00000038787	RPP40	98	50.000	Cercocebus_atys
ENSDARG00000017605	rpp40	99	50.000	ENSCLAG00000003235	RPP40	98	50.000	Chinchilla_lanigera
ENSDARG00000017605	rpp40	99	50.000	ENSCSAG00000007307	RPP40	98	50.000	Chlorocebus_sabaeus
ENSDARG00000017605	rpp40	69	42.400	ENSCHOG00000005856	-	100	42.400	Choloepus_hoffmanni
ENSDARG00000017605	rpp40	99	51.811	ENSCPBG00000009003	RPP40	98	51.811	Chrysemys_picta_bellii
ENSDARG00000017605	rpp40	99	49.721	ENSCANG00000033965	RPP40	98	49.721	Colobus_angolensis_palliatus
ENSDARG00000017605	rpp40	98	50.423	ENSCGRG00001018328	Rpp40	98	50.423	Cricetulus_griseus_chok1gshd
ENSDARG00000017605	rpp40	98	50.423	ENSCGRG00000011344	Rpp40	98	50.423	Cricetulus_griseus_crigri
ENSDARG00000017605	rpp40	100	41.713	ENSCSEG00000015006	-	100	41.989	Cynoglossus_semilaevis
ENSDARG00000017605	rpp40	75	42.545	ENSCVAG00000012169	rpp40	100	43.273	Cyprinodon_variegatus
ENSDARG00000017605	rpp40	81	45.392	ENSDNOG00000048136	RPP40	98	45.392	Dasypus_novemcinctus
ENSDARG00000017605	rpp40	99	38.692	ENSDORG00000011196	-	99	38.692	Dipodomys_ordii
ENSDARG00000017605	rpp40	99	48.189	ENSDORG00000029944	-	99	48.189	Dipodomys_ordii
ENSDARG00000017605	rpp40	99	40.503	ENSETEG00000007458	RPP40	98	40.503	Echinops_telfairi
ENSDARG00000017605	rpp40	98	46.067	ENSEBUG00000000386	rpp40	99	46.067	Eptatretus_burgeri
ENSDARG00000017605	rpp40	99	49.582	ENSEASG00005012116	RPP40	79	49.582	Equus_asinus_asinus
ENSDARG00000017605	rpp40	99	49.582	ENSECAG00000017247	RPP40	79	49.582	Equus_caballus
ENSDARG00000017605	rpp40	80	38.194	ENSEEUG00000012087	RPP40	97	38.194	Erinaceus_europaeus
ENSDARG00000017605	rpp40	100	65.097	ENSELUG00000017004	rpp40	100	65.097	Esox_lucius
ENSDARG00000017605	rpp40	99	49.304	ENSFCAG00000009249	RPP40	99	49.304	Felis_catus
ENSDARG00000017605	rpp40	87	49.847	ENSFALG00000013166	RPP40	100	49.847	Ficedula_albicollis
ENSDARG00000017605	rpp40	81	40.068	ENSFDAG00000000265	-	99	40.068	Fukomys_damarensis
ENSDARG00000017605	rpp40	99	49.721	ENSFDAG00000013001	-	98	49.721	Fukomys_damarensis
ENSDARG00000017605	rpp40	100	48.753	ENSFHEG00000021429	rpp40	89	48.753	Fundulus_heteroclitus
ENSDARG00000017605	rpp40	89	44.720	ENSGMOG00000018653	rpp40	100	44.720	Gadus_morhua
ENSDARG00000017605	rpp40	99	49.304	ENSGALG00000036074	RPP40	98	49.304	Gallus_gallus
ENSDARG00000017605	rpp40	84	41.914	ENSGAFG00000004189	-	100	41.914	Gambusia_affinis
ENSDARG00000017605	rpp40	100	50.416	ENSGACG00000002472	rpp40	100	50.416	Gasterosteus_aculeatus
ENSDARG00000017605	rpp40	99	50.975	ENSGAGG00000012918	RPP40	98	50.975	Gopherus_agassizii
ENSDARG00000017605	rpp40	99	50.559	ENSGGOG00000013764	RPP40	98	50.559	Gorilla_gorilla
ENSDARG00000017605	rpp40	91	46.988	ENSHBUG00000009378	rpp40	95	46.988	Haplochromis_burtoni
ENSDARG00000017605	rpp40	99	50.279	ENSHGLG00000004871	RPP40	98	50.279	Heterocephalus_glaber_female
ENSDARG00000017605	rpp40	99	50.559	ENSHGLG00100002080	RPP40	98	50.559	Heterocephalus_glaber_male
ENSDARG00000017605	rpp40	98	40.227	ENSHCOG00000013264	-	94	40.227	Hippocampus_comes
ENSDARG00000017605	rpp40	100	70.083	ENSIPUG00000008951	RPP40	100	70.083	Ictalurus_punctatus
ENSDARG00000017605	rpp40	99	49.441	ENSSTOG00000011199	RPP40	98	49.441	Ictidomys_tridecemlineatus
ENSDARG00000017605	rpp40	99	47.486	ENSJJAG00000020629	Rpp40	98	47.486	Jaculus_jaculus
ENSDARG00000017605	rpp40	100	47.645	ENSKMAG00000019358	rpp40	100	47.645	Kryptolebias_marmoratus
ENSDARG00000017605	rpp40	100	51.524	ENSLBEG00000022724	rpp40	100	51.524	Labrus_bergylta
ENSDARG00000017605	rpp40	100	51.381	ENSLACG00000014848	RPP40	100	51.381	Latimeria_chalumnae
ENSDARG00000017605	rpp40	100	58.678	ENSLOCG00000011650	rpp40	99	58.678	Lepisosteus_oculatus
ENSDARG00000017605	rpp40	83	49.502	ENSLAFG00000007530	RPP40	99	49.502	Loxodonta_africana
ENSDARG00000017605	rpp40	99	49.441	ENSMFAG00000043100	RPP40	98	49.441	Macaca_fascicularis
ENSDARG00000017605	rpp40	99	49.721	ENSMMUG00000004966	RPP40	98	49.721	Macaca_mulatta
ENSDARG00000017605	rpp40	99	49.441	ENSMNEG00000041986	RPP40	99	48.837	Macaca_nemestrina
ENSDARG00000017605	rpp40	99	44.413	ENSMLEG00000040851	RPP40	100	53.398	Mandrillus_leucophaeus
ENSDARG00000017605	rpp40	100	50.139	ENSMAMG00000019551	rpp40	99	50.139	Mastacembelus_armatus
ENSDARG00000017605	rpp40	99	48.889	ENSMZEG00005019475	rpp40	99	48.889	Maylandia_zebra
ENSDARG00000017605	rpp40	89	50.774	ENSMGAG00000004009	RPP40	89	50.774	Meleagris_gallopavo
ENSDARG00000017605	rpp40	99	50.279	ENSMAUG00000010268	Rpp40	98	50.279	Mesocricetus_auratus
ENSDARG00000017605	rpp40	99	49.861	ENSMICG00000003297	RPP40	99	45.961	Microcebus_murinus
ENSDARG00000017605	rpp40	99	50.000	ENSMOCG00000000305	Rpp40	98	50.000	Microtus_ochrogaster
ENSDARG00000017605	rpp40	100	40.443	ENSMMOG00000020591	-	100	40.443	Mola_mola
ENSDARG00000017605	rpp40	99	49.582	ENSMODG00000009826	RPP40	99	49.582	Monodelphis_domestica
ENSDARG00000017605	rpp40	100	50.693	ENSMALG00000020133	rpp40	100	50.693	Monopterus_albus
ENSDARG00000017605	rpp40	99	50.279	MGP_CAROLIEiJ_G0018429	Rpp40	98	50.279	Mus_caroli
ENSDARG00000017605	rpp40	99	50.279	ENSMUSG00000021418	Rpp40	98	50.279	Mus_musculus
ENSDARG00000017605	rpp40	99	49.721	MGP_PahariEiJ_G0019497	Rpp40	98	49.721	Mus_pahari
ENSDARG00000017605	rpp40	99	50.000	MGP_SPRETEiJ_G0019309	Rpp40	98	50.000	Mus_spretus
ENSDARG00000017605	rpp40	99	50.838	ENSMPUG00000000530	RPP40	92	50.838	Mustela_putorius_furo
ENSDARG00000017605	rpp40	99	49.721	ENSMLUG00000000501	RPP40	98	49.721	Myotis_lucifugus
ENSDARG00000017605	rpp40	94	43.402	ENSNGAG00000022529	-	98	43.402	Nannospalax_galili
ENSDARG00000017605	rpp40	99	48.883	ENSNGAG00000023955	-	98	48.883	Nannospalax_galili
ENSDARG00000017605	rpp40	88	44.892	ENSNBRG00000017465	rpp40	86	44.954	Neolamprologus_brichardi
ENSDARG00000017605	rpp40	99	50.559	ENSNLEG00000034397	RPP40	98	50.559	Nomascus_leucogenys
ENSDARG00000017605	rpp40	99	44.413	ENSMEUG00000005300	RPP40	98	44.413	Notamacropus_eugenii
ENSDARG00000017605	rpp40	99	48.189	ENSODEG00000018153	-	99	48.189	Octodon_degus
ENSDARG00000017605	rpp40	100	51.105	ENSODEG00000007255	-	99	51.105	Octodon_degus
ENSDARG00000017605	rpp40	89	46.440	ENSODEG00000006170	-	100	46.440	Octodon_degus
ENSDARG00000017605	rpp40	99	48.889	ENSONIG00000014016	rpp40	99	48.889	Oreochromis_niloticus
ENSDARG00000017605	rpp40	83	51.656	ENSOANG00000001200	RPP40	99	51.656	Ornithorhynchus_anatinus
ENSDARG00000017605	rpp40	99	47.619	ENSOCUG00000000354	RPP40	98	47.619	Oryctolagus_cuniculus
ENSDARG00000017605	rpp40	99	46.369	ENSORLG00000008242	-	99	46.369	Oryzias_latipes
ENSDARG00000017605	rpp40	99	46.648	ENSORLG00020013745	-	90	46.648	Oryzias_latipes_hni
ENSDARG00000017605	rpp40	99	46.648	ENSORLG00015000887	-	99	46.648	Oryzias_latipes_hsok
ENSDARG00000017605	rpp40	99	48.045	ENSOMEG00000002747	rpp40	99	48.045	Oryzias_melastigma
ENSDARG00000017605	rpp40	99	49.441	ENSOGAG00000006055	RPP40	98	49.441	Otolemur_garnettii
ENSDARG00000017605	rpp40	92	48.949	ENSOARG00000018783	RPP40	99	50.000	Ovis_aries
ENSDARG00000017605	rpp40	99	50.279	ENSPPAG00000023703	RPP40	98	50.279	Pan_paniscus
ENSDARG00000017605	rpp40	99	49.025	ENSPPRG00000005612	RPP40	99	49.025	Panthera_pardus
ENSDARG00000017605	rpp40	99	47.486	ENSPTIG00000018847	RPP40	99	47.486	Panthera_tigris_altaica
ENSDARG00000017605	rpp40	99	50.000	ENSPTRG00000017690	RPP40	98	50.000	Pan_troglodytes
ENSDARG00000017605	rpp40	99	49.304	ENSPANG00000017865	RPP40	99	49.304	Papio_anubis
ENSDARG00000017605	rpp40	100	60.388	ENSPKIG00000006311	rpp40	100	60.388	Paramormyrops_kingsleyae
ENSDARG00000017605	rpp40	61	49.776	ENSPSIG00000007854	RPP40	100	49.776	Pelodiscus_sinensis
ENSDARG00000017605	rpp40	93	43.491	ENSPEMG00000020809	Rpp40	91	43.491	Peromyscus_maniculatus_bairdii
ENSDARG00000017605	rpp40	76	42.701	ENSPMAG00000008412	rpp40	99	42.701	Petromyzon_marinus
ENSDARG00000017605	rpp40	99	50.000	ENSPCIG00000010682	RPP40	98	50.000	Phascolarctos_cinereus
ENSDARG00000017605	rpp40	100	44.077	ENSPFOG00000011460	rpp40	99	44.077	Poecilia_formosa
ENSDARG00000017605	rpp40	100	44.044	ENSPLAG00000001334	rpp40	100	44.044	Poecilia_latipinna
ENSDARG00000017605	rpp40	100	44.875	ENSPMEG00000007721	rpp40	100	44.875	Poecilia_mexicana
ENSDARG00000017605	rpp40	100	45.429	ENSPREG00000009215	rpp40	100	45.429	Poecilia_reticulata
ENSDARG00000017605	rpp40	99	50.000	ENSPPYG00000016194	RPP40	98	50.000	Pongo_abelii
ENSDARG00000017605	rpp40	99	48.747	ENSPCOG00000003907	RPP40	99	48.747	Propithecus_coquereli
ENSDARG00000017605	rpp40	99	49.582	ENSPVAG00000011325	RPP40	99	49.582	Pteropus_vampyrus
ENSDARG00000017605	rpp40	84	45.545	ENSPNYG00000004432	rpp40	100	45.545	Pundamilia_nyererei
ENSDARG00000017605	rpp40	100	64.820	ENSPNAG00000019125	rpp40	100	64.820	Pygocentrus_nattereri
ENSDARG00000017605	rpp40	99	49.025	ENSRNOG00000016226	Rpp40	99	49.025	Rattus_norvegicus
ENSDARG00000017605	rpp40	99	49.861	ENSRBIG00000035800	RPP40	99	49.502	Rhinopithecus_bieti
ENSDARG00000017605	rpp40	99	49.861	ENSRROG00000039116	RPP40	98	50.000	Rhinopithecus_roxellana
ENSDARG00000017605	rpp40	99	49.304	ENSSBOG00000020297	RPP40	99	49.304	Saimiri_boliviensis_boliviensis
ENSDARG00000017605	rpp40	76	48.727	ENSSHAG00000002102	RPP40	99	48.727	Sarcophilus_harrisii
ENSDARG00000017605	rpp40	100	60.388	ENSSFOG00015001142	rpp40	81	60.388	Scleropages_formosus
ENSDARG00000017605	rpp40	100	50.970	ENSSDUG00000007202	rpp40	100	50.970	Seriola_dumerili
ENSDARG00000017605	rpp40	100	50.693	ENSSLDG00000017563	rpp40	100	50.693	Seriola_lalandi_dorsalis
ENSDARG00000017605	rpp40	82	46.644	ENSSPUG00000018950	-	100	46.644	Sphenodon_punctatus
ENSDARG00000017605	rpp40	99	47.911	ENSSPUG00000017487	-	98	47.911	Sphenodon_punctatus
ENSDARG00000017605	rpp40	100	50.416	ENSSPAG00000022716	rpp40	100	50.416	Stegastes_partitus
ENSDARG00000017605	rpp40	99	49.861	ENSSSCG00000000998	RPP40	99	49.861	Sus_scrofa
ENSDARG00000017605	rpp40	99	50.139	ENSTGUG00000002258	-	100	50.139	Taeniopygia_guttata
ENSDARG00000017605	rpp40	99	47.619	ENSTRUG00000003755	rpp40	99	47.619	Takifugu_rubripes
ENSDARG00000017605	rpp40	100	47.922	ENSTNIG00000003077	rpp40	100	47.922	Tetraodon_nigroviridis
ENSDARG00000017605	rpp40	69	34.263	ENSTBEG00000014467	-	73	34.263	Tupaia_belangeri
ENSDARG00000017605	rpp40	100	44.199	ENSTTRG00000007319	RPP40	99	44.199	Tursiops_truncatus
ENSDARG00000017605	rpp40	99	49.441	ENSUAMG00000002159	RPP40	99	49.169	Ursus_americanus
ENSDARG00000017605	rpp40	99	49.441	ENSUMAG00000018639	RPP40	92	49.441	Ursus_maritimus
ENSDARG00000017605	rpp40	71	35.798	ENSVPAG00000004652	-	89	35.798	Vicugna_pacos
ENSDARG00000017605	rpp40	99	49.304	ENSVVUG00000005451	RPP40	99	49.304	Vulpes_vulpes
ENSDARG00000017605	rpp40	99	46.111	ENSXETG00000017617	rpp40	99	46.111	Xenopus_tropicalis
ENSDARG00000017605	rpp40	52	51.923	ENSXCOG00000019991	-	58	51.429	Xiphophorus_couchianus
ENSDARG00000017605	rpp40	100	35.734	ENSXMAG00000024940	rpp40	99	35.734	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process