EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000017762 (Gene tree)
Gene ID: 192311
Gene Symbol: srrt
Alias: CHUNP6881|ars2|zgc:92060
Full Name: serrate RNA effector molecule homolog (Arabidopsis)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 43531 bases
Position: chr5:4253929-4297459
Accession: ZDB-GENE-020419-13
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000005886	ARS2	PF04959.13	6.1e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000018895	-	3030	XM_005165014	ENSDARP00000005886	896 (aa)	XP_005165071	Q66I22

Gene Model

Click here to download ENSDARG00000017762's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000017762's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000017762	srrt	51	78.431	ENSG00000087087	SRRT	98	85.484	Homo_sapiens
ENSDARG00000017762	srrt	81	83.190	ENSAPOG00000002304	srrt	96	78.363	Acanthochromis_polyacanthus
ENSDARG00000017762	srrt	96	66.967	ENSAMEG00000014506	SRRT	51	77.851	Ailuropoda_melanoleuca
ENSDARG00000017762	srrt	81	86.374	ENSACIG00000015795	srrt	95	85.590	Amphilophus_citrinellus
ENSDARG00000017762	srrt	92	57.008	ENSAOCG00000009189	-	95	57.029	Amphiprion_ocellaris
ENSDARG00000017762	srrt	95	78.026	ENSAOCG00000009693	srrt	89	85.590	Amphiprion_ocellaris
ENSDARG00000017762	srrt	95	77.791	ENSAPEG00000003646	srrt	91	85.371	Amphiprion_percula
ENSDARG00000017762	srrt	92	57.008	ENSAPEG00000020016	-	95	57.029	Amphiprion_percula
ENSDARG00000017762	srrt	95	76.941	ENSATEG00000014425	srrt	96	76.408	Anabas_testudineus
ENSDARG00000017762	srrt	52	65.496	ENSATEG00000003652	-	86	66.525	Anabas_testudineus
ENSDARG00000017762	srrt	52	77.302	ENSACAG00000001014	SRRT	96	68.140	Anolis_carolinensis
ENSDARG00000017762	srrt	51	77.253	ENSANAG00000031718	SRRT	53	75.751	Aotus_nancymaae
ENSDARG00000017762	srrt	52	65.199	ENSACLG00000009423	-	94	56.694	Astatotilapia_calliptera
ENSDARG00000017762	srrt	95	76.498	ENSACLG00000013156	srrt	92	77.257	Astatotilapia_calliptera
ENSDARG00000017762	srrt	95	83.039	ENSAMXG00000016671	srrt	92	82.921	Astyanax_mexicanus
ENSDARG00000017762	srrt	51	77.039	ENSBTAG00000001134	SRRT	53	75.536	Bos_taurus
ENSDARG00000017762	srrt	73	42.478	WBGene00017085	E01A2.2	85	41.649	Caenorhabditis_elegans
ENSDARG00000017762	srrt	51	77.253	ENSCJAG00000014917	SRRT	53	75.751	Callithrix_jacchus
ENSDARG00000017762	srrt	51	77.039	ENSCAFG00000023538	SRRT	53	75.536	Canis_familiaris
ENSDARG00000017762	srrt	51	79.470	ENSCAFG00020013358	SRRT	52	78.808	Canis_lupus_dingo
ENSDARG00000017762	srrt	84	77.322	ENSCHIG00000010495	SRRT	88	76.458	Capra_hircus
ENSDARG00000017762	srrt	95	65.557	ENSTSYG00000036426	SRRT	56	76.674	Carlito_syrichta
ENSDARG00000017762	srrt	51	78.509	ENSCAPG00000013586	SRRT	89	71.550	Cavia_aperea
ENSDARG00000017762	srrt	96	65.982	ENSCPOG00000001739	SRRT	53	75.803	Cavia_porcellus
ENSDARG00000017762	srrt	51	77.253	ENSCCAG00000015877	SRRT	53	75.751	Cebus_capucinus
ENSDARG00000017762	srrt	51	77.538	ENSCATG00000036306	SRRT	53	76.674	Cercocebus_atys
ENSDARG00000017762	srrt	96	64.886	ENSCLAG00000007568	SRRT	89	72.163	Chinchilla_lanigera
ENSDARG00000017762	srrt	51	77.253	ENSCSAG00000017996	SRRT	53	75.751	Chlorocebus_sabaeus
ENSDARG00000017762	srrt	53	71.704	ENSCHOG00000007815	SRRT	68	72.204	Choloepus_hoffmanni
ENSDARG00000017762	srrt	72	70.943	ENSCPBG00000011553	SRRT	84	69.643	Chrysemys_picta_bellii
ENSDARG00000017762	srrt	100	42.935	ENSCSAVG00000008394	-	81	56.571	Ciona_savignyi
ENSDARG00000017762	srrt	51	77.538	ENSCANG00000034556	SRRT	53	76.674	Colobus_angolensis_palliatus
ENSDARG00000017762	srrt	96	65.604	ENSCGRG00001001594	Srrt	95	65.711	Cricetulus_griseus_chok1gshd
ENSDARG00000017762	srrt	89	78.481	ENSCGRG00000007292	Srrt	95	80.667	Cricetulus_griseus_crigri
ENSDARG00000017762	srrt	52	64.211	ENSCSEG00000005233	-	55	62.343	Cynoglossus_semilaevis
ENSDARG00000017762	srrt	98	69.413	ENSCSEG00000017878	srrt	95	68.910	Cynoglossus_semilaevis
ENSDARG00000017762	srrt	90	54.310	ENSCVAG00000017344	-	94	52.778	Cyprinodon_variegatus
ENSDARG00000017762	srrt	95	77.556	ENSCVAG00000019848	srrt	96	76.905	Cyprinodon_variegatus
ENSDARG00000017762	srrt	51	77.253	ENSDNOG00000003851	SRRT	95	65.906	Dasypus_novemcinctus
ENSDARG00000017762	srrt	96	66.590	ENSDORG00000005584	Srrt	89	73.491	Dipodomys_ordii
ENSDARG00000017762	srrt	85	50.499	FBgn0033062	Ars2	69	50.851	Drosophila_melanogaster
ENSDARG00000017762	srrt	73	75.053	ENSETEG00000016175	SRRT	71	74.194	Echinops_telfairi
ENSDARG00000017762	srrt	61	61.458	ENSEBUG00000008517	-	77	60.669	Eptatretus_burgeri
ENSDARG00000017762	srrt	51	77.253	ENSEASG00005016956	SRRT	53	75.751	Equus_asinus_asinus
ENSDARG00000017762	srrt	51	77.253	ENSECAG00000012292	SRRT	53	75.751	Equus_caballus
ENSDARG00000017762	srrt	80	78.947	ENSEEUG00000009117	SRRT	81	78.947	Erinaceus_europaeus
ENSDARG00000017762	srrt	92	58.480	ENSELUG00000021216	-	53	69.083	Esox_lucius
ENSDARG00000017762	srrt	95	78.809	ENSELUG00000006651	srrt	95	79.086	Esox_lucius
ENSDARG00000017762	srrt	51	77.253	ENSFCAG00000006855	SRRT	53	75.751	Felis_catus
ENSDARG00000017762	srrt	51	73.731	ENSFDAG00000021347	SRRT	88	70.419	Fukomys_damarensis
ENSDARG00000017762	srrt	52	58.811	ENSFHEG00000004105	-	94	58.947	Fundulus_heteroclitus
ENSDARG00000017762	srrt	72	85.590	ENSFHEG00000002756	srrt	87	85.714	Fundulus_heteroclitus
ENSDARG00000017762	srrt	64	66.591	ENSGMOG00000018694	-	79	67.191	Gadus_morhua
ENSDARG00000017762	srrt	95	69.708	ENSGMOG00000018619	srrt	95	70.609	Gadus_morhua
ENSDARG00000017762	srrt	95	77.374	ENSGAFG00000005423	srrt	96	77.076	Gambusia_affinis
ENSDARG00000017762	srrt	92	53.025	ENSGAFG00000020383	-	55	63.734	Gambusia_affinis
ENSDARG00000017762	srrt	92	55.662	ENSGACG00000001100	-	52	64.592	Gasterosteus_aculeatus
ENSDARG00000017762	srrt	95	77.648	ENSGACG00000020387	srrt	95	77.093	Gasterosteus_aculeatus
ENSDARG00000017762	srrt	51	77.538	ENSGGOG00000001508	SRRT	59	72.067	Gorilla_gorilla
ENSDARG00000017762	srrt	95	76.616	ENSHBUG00000002942	srrt	92	77.374	Haplochromis_burtoni
ENSDARG00000017762	srrt	96	65.529	ENSHGLG00000008344	Srrt	89	72.163	Heterocephalus_glaber_female
ENSDARG00000017762	srrt	96	66.629	ENSHGLG00100018857	Srrt	89	73.434	Heterocephalus_glaber_male
ENSDARG00000017762	srrt	92	54.633	ENSHCOG00000008904	-	90	63.774	Hippocampus_comes
ENSDARG00000017762	srrt	98	74.800	ENSHCOG00000005403	srrt	96	75.117	Hippocampus_comes
ENSDARG00000017762	srrt	92	83.836	ENSIPUG00000021150	srrt	96	82.807	Ictalurus_punctatus
ENSDARG00000017762	srrt	51	77.538	ENSSTOG00000013776	SRRT	95	67.281	Ictidomys_tridecemlineatus
ENSDARG00000017762	srrt	95	66.705	ENSJJAG00000010446	Srrt	89	72.786	Jaculus_jaculus
ENSDARG00000017762	srrt	52	63.673	ENSKMAG00000008468	-	54	63.883	Kryptolebias_marmoratus
ENSDARG00000017762	srrt	95	74.824	ENSKMAG00000013599	srrt	96	75.822	Kryptolebias_marmoratus
ENSDARG00000017762	srrt	98	73.077	ENSLBEG00000016308	srrt	58	76.744	Labrus_bergylta
ENSDARG00000017762	srrt	95	55.981	ENSLACG00000001089	SRRT	53	58.225	Latimeria_chalumnae
ENSDARG00000017762	srrt	90	67.590	ENSLOCG00000013658	srrt	86	73.077	Lepisosteus_oculatus
ENSDARG00000017762	srrt	51	77.253	ENSLAFG00000007725	SRRT	53	75.751	Loxodonta_africana
ENSDARG00000017762	srrt	51	77.538	ENSMFAG00000033745	SRRT	56	74.630	Macaca_fascicularis
ENSDARG00000017762	srrt	96	65.398	ENSMMUG00000021255	SRRT	53	75.803	Macaca_mulatta
ENSDARG00000017762	srrt	51	77.253	ENSMNEG00000041864	SRRT	53	75.751	Macaca_nemestrina
ENSDARG00000017762	srrt	51	77.538	ENSMLEG00000029479	SRRT	53	76.674	Mandrillus_leucophaeus
ENSDARG00000017762	srrt	52	67.086	ENSMAMG00000010681	-	94	58.068	Mastacembelus_armatus
ENSDARG00000017762	srrt	95	77.059	ENSMAMG00000014311	srrt	96	78.169	Mastacembelus_armatus
ENSDARG00000017762	srrt	95	76.616	ENSMZEG00005016135	srrt	92	77.374	Maylandia_zebra
ENSDARG00000017762	srrt	52	65.409	ENSMZEG00005028002	-	96	56.865	Maylandia_zebra
ENSDARG00000017762	srrt	95	66.055	ENSMAUG00000011386	Srrt	96	65.711	Mesocricetus_auratus
ENSDARG00000017762	srrt	51	77.253	ENSMICG00000009471	SRRT	98	66.135	Microcebus_murinus
ENSDARG00000017762	srrt	59	67.035	ENSMOCG00000001971	Srrt	89	72.318	Microtus_ochrogaster
ENSDARG00000017762	srrt	51	66.882	ENSMMOG00000011137	-	55	64.076	Mola_mola
ENSDARG00000017762	srrt	95	73.294	ENSMMOG00000016399	srrt	87	82.713	Mola_mola
ENSDARG00000017762	srrt	51	74.786	ENSMODG00000004862	SRRT	89	73.932	Monodelphis_domestica
ENSDARG00000017762	srrt	53	51.674	ENSMALG00000005567	-	84	50.533	Monopterus_albus
ENSDARG00000017762	srrt	87	70.935	ENSMALG00000018604	srrt	99	68.713	Monopterus_albus
ENSDARG00000017762	srrt	59	66.298	MGP_CAROLIEiJ_G0027870	Srrt	100	73.704	Mus_caroli
ENSDARG00000017762	srrt	59	67.035	ENSMUSG00000037364	Srrt	99	73.704	Mus_musculus
ENSDARG00000017762	srrt	96	67.283	MGP_PahariEiJ_G0024456	Srrt	100	73.704	Mus_pahari
ENSDARG00000017762	srrt	59	67.035	MGP_SPRETEiJ_G0028875	Srrt	100	73.704	Mus_spretus
ENSDARG00000017762	srrt	96	65.607	ENSMPUG00000015839	SRRT	53	75.751	Mustela_putorius_furo
ENSDARG00000017762	srrt	51	77.039	ENSMLUG00000009975	SRRT	53	75.536	Myotis_lucifugus
ENSDARG00000017762	srrt	96	67.426	ENSNGAG00000023715	Srrt	64	75.751	Nannospalax_galili
ENSDARG00000017762	srrt	51	84.581	ENSNBRG00000019100	srrt	95	75.469	Neolamprologus_brichardi
ENSDARG00000017762	srrt	50	67.325	ENSNLEG00000011987	SRRT	92	65.302	Nomascus_leucogenys
ENSDARG00000017762	srrt	96	54.846	ENSMEUG00000011941	SRRT	52	63.226	Notamacropus_eugenii
ENSDARG00000017762	srrt	60	75.000	ENSOPRG00000002502	-	67	78.788	Ochotona_princeps
ENSDARG00000017762	srrt	51	78.728	ENSODEG00000016856	SRRT	89	73.002	Octodon_degus
ENSDARG00000017762	srrt	95	75.939	ENSONIG00000004242	srrt	96	75.029	Oreochromis_niloticus
ENSDARG00000017762	srrt	52	66.109	ENSONIG00000016080	-	52	66.595	Oreochromis_niloticus
ENSDARG00000017762	srrt	98	74.087	ENSORLG00000008120	srrt	96	74.883	Oryzias_latipes
ENSDARG00000017762	srrt	98	74.087	ENSORLG00020003058	srrt	96	74.765	Oryzias_latipes_hni
ENSDARG00000017762	srrt	98	74.201	ENSORLG00015008062	srrt	96	74.765	Oryzias_latipes_hsok
ENSDARG00000017762	srrt	98	74.886	ENSOMEG00000003155	srrt	91	84.902	Oryzias_melastigma
ENSDARG00000017762	srrt	92	57.041	ENSOMEG00000006963	-	95	56.747	Oryzias_melastigma
ENSDARG00000017762	srrt	51	77.253	ENSOGAG00000017242	SRRT	95	66.590	Otolemur_garnettii
ENSDARG00000017762	srrt	51	77.322	ENSOARG00000015645	SRRT	53	76.458	Ovis_aries
ENSDARG00000017762	srrt	51	77.538	ENSPPAG00000041090	SRRT	53	76.674	Pan_paniscus
ENSDARG00000017762	srrt	51	77.106	ENSPPRG00000009557	SRRT	53	76.242	Panthera_pardus
ENSDARG00000017762	srrt	51	77.253	ENSPTIG00000014355	SRRT	53	75.751	Panthera_tigris_altaica
ENSDARG00000017762	srrt	51	77.538	ENSPTRG00000019511	SRRT	53	76.674	Pan_troglodytes
ENSDARG00000017762	srrt	51	76.321	ENSPANG00000020763	SRRT	54	74.630	Papio_anubis
ENSDARG00000017762	srrt	98	80.543	ENSPKIG00000005434	srrt	95	80.604	Paramormyrops_kingsleyae
ENSDARG00000017762	srrt	94	72.406	ENSPKIG00000022212	-	96	72.454	Paramormyrops_kingsleyae
ENSDARG00000017762	srrt	51	76.623	ENSPSIG00000016311	SRRT	95	67.870	Pelodiscus_sinensis
ENSDARG00000017762	srrt	83	83.585	ENSPMGG00000002841	srrt	94	81.974	Periophthalmus_magnuspinnatus
ENSDARG00000017762	srrt	96	67.202	ENSPEMG00000010834	Srrt	89	72.786	Peromyscus_maniculatus_bairdii
ENSDARG00000017762	srrt	96	53.235	ENSPMAG00000009614	-	55	61.077	Petromyzon_marinus
ENSDARG00000017762	srrt	51	75.589	ENSPCIG00000000816	SRRT	95	65.557	Phascolarctos_cinereus
ENSDARG00000017762	srrt	84	64.009	ENSPFOG00000016554	-	94	63.812	Poecilia_formosa
ENSDARG00000017762	srrt	95	77.438	ENSPFOG00000005704	srrt	96	77.257	Poecilia_formosa
ENSDARG00000017762	srrt	95	77.986	ENSPLAG00000021992	srrt	96	78.037	Poecilia_latipinna
ENSDARG00000017762	srrt	84	63.656	ENSPLAG00000004526	-	94	63.462	Poecilia_latipinna
ENSDARG00000017762	srrt	81	62.812	ENSPMEG00000001520	-	94	62.613	Poecilia_mexicana
ENSDARG00000017762	srrt	95	77.086	ENSPMEG00000001182	srrt	96	76.725	Poecilia_mexicana
ENSDARG00000017762	srrt	95	77.438	ENSPREG00000022308	srrt	96	77.140	Poecilia_reticulata
ENSDARG00000017762	srrt	51	77.538	ENSPCOG00000025751	SRRT	95	66.590	Propithecus_coquereli
ENSDARG00000017762	srrt	65	68.670	ENSPVAG00000000834	SRRT	90	67.167	Pteropus_vampyrus
ENSDARG00000017762	srrt	95	76.498	ENSPNYG00000018710	srrt	96	77.257	Pundamilia_nyererei
ENSDARG00000017762	srrt	90	93.789	ENSPNAG00000010629	srrt	95	93.789	Pygocentrus_nattereri
ENSDARG00000017762	srrt	51	67.320	ENSRNOG00000048277	AABR07035787.1	92	65.795	Rattus_norvegicus
ENSDARG00000017762	srrt	51	77.253	ENSRBIG00000035718	SRRT	63	72.571	Rhinopithecus_bieti
ENSDARG00000017762	srrt	51	77.253	ENSRROG00000030622	SRRT	63	72.571	Rhinopithecus_roxellana
ENSDARG00000017762	srrt	51	77.253	ENSSBOG00000033570	SRRT	53	76.674	Saimiri_boliviensis_boliviensis
ENSDARG00000017762	srrt	51	75.480	ENSSHAG00000007349	-	74	74.840	Sarcophilus_harrisii
ENSDARG00000017762	srrt	95	80.301	ENSSFOG00015017293	srrt	95	80.578	Scleropages_formosus
ENSDARG00000017762	srrt	51	65.591	ENSSMAG00000018195	-	57	65.525	Scophthalmus_maximus
ENSDARG00000017762	srrt	95	78.000	ENSSMAG00000015342	srrt	96	77.817	Scophthalmus_maximus
ENSDARG00000017762	srrt	95	78.941	ENSSDUG00000012049	srrt	95	77.347	Seriola_dumerili
ENSDARG00000017762	srrt	52	56.173	ENSSDUG00000002051	-	94	56.000	Seriola_dumerili
ENSDARG00000017762	srrt	81	85.996	ENSSLDG00000017477	srrt	87	85.996	Seriola_lalandi_dorsalis
ENSDARG00000017762	srrt	95	77.752	ENSSPAG00000005665	srrt	94	77.921	Stegastes_partitus
ENSDARG00000017762	srrt	51	57.667	ENSSPAG00000018943	-	94	57.725	Stegastes_partitus
ENSDARG00000017762	srrt	90	52.528	ENSTRUG00000000023	-	51	62.329	Takifugu_rubripes
ENSDARG00000017762	srrt	98	73.303	ENSTRUG00000016075	srrt	96	73.372	Takifugu_rubripes
ENSDARG00000017762	srrt	92	53.095	ENSTNIG00000003111	-	53	65.385	Tetraodon_nigroviridis
ENSDARG00000017762	srrt	74	68.189	ENSTNIG00000011779	srrt	100	68.483	Tetraodon_nigroviridis
ENSDARG00000017762	srrt	59	82.979	ENSTBEG00000005212	SRRT	57	82.979	Tupaia_belangeri
ENSDARG00000017762	srrt	51	77.253	ENSTTRG00000011104	SRRT	53	75.751	Tursiops_truncatus
ENSDARG00000017762	srrt	51	77.253	ENSUAMG00000027997	SRRT	55	75.751	Ursus_americanus
ENSDARG00000017762	srrt	51	77.253	ENSUMAG00000011295	SRRT	53	75.751	Ursus_maritimus
ENSDARG00000017762	srrt	51	77.039	ENSVVUG00000023572	SRRT	53	75.536	Vulpes_vulpes
ENSDARG00000017762	srrt	71	74.317	ENSXETG00000025124	srrt	72	78.882	Xenopus_tropicalis
ENSDARG00000017762	srrt	52	51.586	ENSXCOG00000013105	-	92	52.928	Xiphophorus_couchianus
ENSDARG00000017762	srrt	98	77.283	ENSXMAG00000007627	srrt	86	87.013	Xiphophorus_maculatus
ENSDARG00000017762	srrt	92	52.732	ENSXMAG00000002090	-	55	64.086	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISS	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008283	cell proliferation	-	ISS	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0031053	primary miRNA processing	-	ISS	Process