EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000017843 (Gene tree)
Gene ID
393565
Gene Symbol
srsf1b
Alias
sfrs1|sfrs1b|wu:fb80g05|zgc:111894|zgc:65898|zgc:76897
Full Name
serine/arginine-rich splicing factor 1b
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
10013 bases
Position
chr21:39567505-39577517
Accession
ZDB-GENE-040426-1467
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000116886RRM_1PF00076.226.2e-3312
ENSDARP00000116886RRM_1PF00076.226.2e-3322
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000143566-4032-ENSDARP00000116886245 (aa)-Q6NYA0
Gene Model
Click here to download ENSDARG00000017843's gene model file
Pathways
Pathway IDPathway NameSource
dre03040SpliceosomeKEGG
dre05168Herpes simplex virus 1 infectionKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000017843's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000017843srsf1b6643.503ENSDARG00000016783srsf6b6946.479
ENSDARG00000017843srsf1b6745.930ENSDARG00000105293srsf46252.113
ENSDARG00000017843srsf1b6742.778ENSDARG00000029818srsf5a9539.394
ENSDARG00000017843srsf1b10092.607ENSDARG00000057691srsf1a10092.746
ENSDARG00000017843srsf1b7370.950ENSDARG00000008097srsf97370.950
ENSDARG00000017843srsf1b6551.190ENSDARG00000027734srsf5b8849.206
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000017843srsf1b9996.735ENSG00000136450SRSF19996.735Homo_sapiens
ENSDARG00000017843srsf1b7990.000ENSAPOG00000008542-8088.500Acanthochromis_polyacanthus
ENSDARG00000017843srsf1b7991.710ENSAPOG00000002748-7890.155Acanthochromis_polyacanthus
ENSDARG00000017843srsf1b9993.878ENSAMEG00000002635SRSF19993.878Ailuropoda_melanoleuca
ENSDARG00000017843srsf1b7991.710ENSACIG00000008091srsf1a8389.119Amphilophus_citrinellus
ENSDARG00000017843srsf1b7990.000ENSAOCG00000000337-8188.500Amphiprion_ocellaris
ENSDARG00000017843srsf1b7992.228ENSAOCG00000010671-8390.155Amphiprion_ocellaris
ENSDARG00000017843srsf1b7992.228ENSAPEG00000009915-8390.155Amphiprion_percula
ENSDARG00000017843srsf1b7990.000ENSAPEG00000023352-7988.500Amphiprion_percula
ENSDARG00000017843srsf1b8288.177ENSATEG00000021567-8188.325Anabas_testudineus
ENSDARG00000017843srsf1b7992.228ENSATEG00000022403-7790.155Anabas_testudineus
ENSDARG00000017843srsf1b9997.551ENSACAG00000005542-9997.551Anolis_carolinensis
ENSDARG00000017843srsf1b8070.558ENSANAG00000025417-7368.557Aotus_nancymaae
ENSDARG00000017843srsf1b9896.708ENSANAG00000020583-9696.708Aotus_nancymaae
ENSDARG00000017843srsf1b9689.627ENSAMXG00000035996srsf1a8094.527Astyanax_mexicanus
ENSDARG00000017843srsf1b7488.235ENSAMXG00000024373-9487.805Astyanax_mexicanus
ENSDARG00000017843srsf1b9996.735ENSBTAG00000014766SRSF19996.735Bos_taurus
ENSDARG00000017843srsf1b7989.175ENSCJAG00000008111-8689.175Callithrix_jacchus
ENSDARG00000017843srsf1b9896.708ENSCJAG00000041713-9696.708Callithrix_jacchus
ENSDARG00000017843srsf1b9896.708ENSCAFG00000017430SRSF19696.708Canis_familiaris
ENSDARG00000017843srsf1b9896.708ENSCAFG00020025632-9696.708Canis_lupus_dingo
ENSDARG00000017843srsf1b9996.735ENSCHIG00000010787SRSF19996.735Capra_hircus
ENSDARG00000017843srsf1b9896.708ENSTSYG00000013899-9696.708Carlito_syrichta
ENSDARG00000017843srsf1b9996.735ENSCPOG00000032681-9996.735Cavia_porcellus
ENSDARG00000017843srsf1b9996.735ENSCCAG00000029484-9996.735Cebus_capucinus
ENSDARG00000017843srsf1b9896.708ENSCATG00000042294-9696.708Cercocebus_atys
ENSDARG00000017843srsf1b9996.735ENSCLAG00000014707-9996.735Chinchilla_lanigera
ENSDARG00000017843srsf1b9993.061ENSCSAG00000005642-9695.885Chlorocebus_sabaeus
ENSDARG00000017843srsf1b9996.735ENSCHOG00000001899SRSF19996.735Choloepus_hoffmanni
ENSDARG00000017843srsf1b9997.959ENSCPBG00000009851-9997.959Chrysemys_picta_bellii
ENSDARG00000017843srsf1b9896.708ENSCANG00000029726-9696.708Colobus_angolensis_palliatus
ENSDARG00000017843srsf1b9896.708ENSCGRG00001000670Srsf19696.708Cricetulus_griseus_chok1gshd
ENSDARG00000017843srsf1b9996.735ENSCGRG00000005590Srsf19996.735Cricetulus_griseus_crigri
ENSDARG00000017843srsf1b7992.857ENSCSEG00000014272-7892.857Cynoglossus_semilaevis
ENSDARG00000017843srsf1b7983.254ENSCSEG00000009973-8082.297Cynoglossus_semilaevis
ENSDARG00000017843srsf1b7992.228ENSCVAG00000018617-7890.155Cyprinodon_variegatus
ENSDARG00000017843srsf1b8089.848ENSCVAG00000005458-9289.730Cyprinodon_variegatus
ENSDARG00000017843srsf1b9896.708ENSDNOG00000011737-9696.708Dasypus_novemcinctus
ENSDARG00000017843srsf1b9996.735ENSDORG00000015082Srsf19996.735Dipodomys_ordii
ENSDARG00000017843srsf1b7495.580ENSETEG00000005349-6295.580Echinops_telfairi
ENSDARG00000017843srsf1b9896.708ENSEASG00005002922-9696.708Equus_asinus_asinus
ENSDARG00000017843srsf1b9996.735ENSECAG00000016654SRSF19996.735Equus_caballus
ENSDARG00000017843srsf1b7496.685ENSEEUG00000009255-6296.685Erinaceus_europaeus
ENSDARG00000017843srsf1b8095.918ENSELUG00000021646srsf1a7892.857Esox_lucius
ENSDARG00000017843srsf1b9896.708ENSFCAG00000002250-9696.708Felis_catus
ENSDARG00000017843srsf1b9881.070ENSFALG00000005062-9681.070Ficedula_albicollis
ENSDARG00000017843srsf1b9996.735ENSFDAG00000010646-9996.735Fukomys_damarensis
ENSDARG00000017843srsf1b7992.228ENSFHEG00000003174srsf1a8390.155Fundulus_heteroclitus
ENSDARG00000017843srsf1b9288.496ENSGMOG00000014787-8089.119Gadus_morhua
ENSDARG00000017843srsf1b9997.959ENSGALG00000005525SRSF19997.959Gallus_gallus
ENSDARG00000017843srsf1b7987.113ENSGACG00000020621srsf1b7885.567Gasterosteus_aculeatus
ENSDARG00000017843srsf1b9897.942ENSGAGG00000022965-9697.942Gopherus_agassizii
ENSDARG00000017843srsf1b9896.708ENSGGOG00000004386SRSF19696.708Gorilla_gorilla
ENSDARG00000017843srsf1b7991.710ENSHBUG00000016788srsf1a8089.119Haplochromis_burtoni
ENSDARG00000017843srsf1b8796.744ENSHGLG00000000600-10096.744Heterocephalus_glaber_female
ENSDARG00000017843srsf1b8796.744ENSHGLG00000000669-10096.744Heterocephalus_glaber_female
ENSDARG00000017843srsf1b9996.735ENSHGLG00100016906-9996.735Heterocephalus_glaber_male
ENSDARG00000017843srsf1b8084.500ENSHCOG00000018918srsf1a7885.500Hippocampus_comes
ENSDARG00000017843srsf1b7991.457ENSIPUG00000017039srsf1a7994.975Ictalurus_punctatus
ENSDARG00000017843srsf1b9999.180ENSIPUG00000008750srsf1b9999.180Ictalurus_punctatus
ENSDARG00000017843srsf1b9996.735ENSSTOG00000000243-9996.735Ictidomys_tridecemlineatus
ENSDARG00000017843srsf1b5190.323ENSJJAG00000014464-9386.400Jaculus_jaculus
ENSDARG00000017843srsf1b9996.735ENSJJAG00000000102-9996.735Jaculus_jaculus
ENSDARG00000017843srsf1b7992.228ENSKMAG00000019232srsf1a7889.119Kryptolebias_marmoratus
ENSDARG00000017843srsf1b7986.294ENSLBEG00000015294-7987.310Labrus_bergylta
ENSDARG00000017843srsf1b7993.264ENSLBEG00000020864-8391.192Labrus_bergylta
ENSDARG00000017843srsf1b8094.872ENSLACG00000014160srsf1a7394.330Latimeria_chalumnae
ENSDARG00000017843srsf1b7996.392ENSLOCG00000005994srsf1a9997.551Lepisosteus_oculatus
ENSDARG00000017843srsf1b9996.735ENSLAFG00000025743SRSF19996.735Loxodonta_africana
ENSDARG00000017843srsf1b9996.735ENSMFAG00000040003-9996.735Macaca_fascicularis
ENSDARG00000017843srsf1b9991.020ENSMMUG00000003260-9393.782Macaca_mulatta
ENSDARG00000017843srsf1b9896.708ENSMMUG00000004725SRSF19696.708Macaca_mulatta
ENSDARG00000017843srsf1b9990.612ENSMNEG00000015983-7793.299Macaca_nemestrina
ENSDARG00000017843srsf1b9896.708ENSMNEG00000027680-9696.708Macaca_nemestrina
ENSDARG00000017843srsf1b9987.347ENSMLEG00000015243-7690.206Mandrillus_leucophaeus
ENSDARG00000017843srsf1b9996.735ENSMLEG00000040509SRSF19996.735Mandrillus_leucophaeus
ENSDARG00000017843srsf1b7992.228ENSMAMG00000018454-7890.155Mastacembelus_armatus
ENSDARG00000017843srsf1b7995.361ENSMAMG00000019691-8092.784Mastacembelus_armatus
ENSDARG00000017843srsf1b7989.691ENSMAMG00000019687-7888.144Mastacembelus_armatus
ENSDARG00000017843srsf1b9996.735ENSMAUG00000021845Srsf19996.735Mesocricetus_auratus
ENSDARG00000017843srsf1b9896.708ENSMICG00000013639-9696.708Microcebus_murinus
ENSDARG00000017843srsf1b9996.735ENSMOCG00000001996Srsf19996.735Microtus_ochrogaster
ENSDARG00000017843srsf1b7992.746ENSMMOG00000014354srsf1a8390.674Mola_mola
ENSDARG00000017843srsf1b7496.703ENSMODG00000014781-6296.703Monodelphis_domestica
ENSDARG00000017843srsf1b8277.612ENSMALG00000007763-7881.959Monopterus_albus
ENSDARG00000017843srsf1b7991.710ENSMALG00000017129-7589.637Monopterus_albus
ENSDARG00000017843srsf1b9996.735MGP_CAROLIEiJ_G0016943Srsf19996.735Mus_caroli
ENSDARG00000017843srsf1b9996.735ENSMUSG00000018379Srsf19996.735Mus_musculus
ENSDARG00000017843srsf1b9996.735MGP_PahariEiJ_G0018074Srsf19996.735Mus_pahari
ENSDARG00000017843srsf1b9996.735MGP_SPRETEiJ_G0017790Srsf19996.735Mus_spretus
ENSDARG00000017843srsf1b9996.735ENSMPUG00000015369SRSF19996.735Mustela_putorius_furo
ENSDARG00000017843srsf1b9996.735ENSMLUG00000011040SRSF19996.735Myotis_lucifugus
ENSDARG00000017843srsf1b8286.000ENSMLUG00000023995-7887.113Myotis_lucifugus
ENSDARG00000017843srsf1b9996.735ENSNGAG00000011395Srsf19996.735Nannospalax_galili
ENSDARG00000017843srsf1b9981.893ENSNBRG00000008041srsf1b7880.928Neolamprologus_brichardi
ENSDARG00000017843srsf1b9896.708ENSNLEG00000008088-9696.708Nomascus_leucogenys
ENSDARG00000017843srsf1b5095.968ENSMEUG00000002783-9895.968Notamacropus_eugenii
ENSDARG00000017843srsf1b7496.175ENSOPRG00000001234-10096.175Ochotona_princeps
ENSDARG00000017843srsf1b9996.735ENSODEG00000011481-9996.735Octodon_degus
ENSDARG00000017843srsf1b9592.672ENSONIG00000004860-7992.784Oreochromis_niloticus
ENSDARG00000017843srsf1b7991.710ENSONIG00000013160-7789.119Oreochromis_niloticus
ENSDARG00000017843srsf1b9970.161ENSOCUG00000010894-7572.775Oryctolagus_cuniculus
ENSDARG00000017843srsf1b7992.228ENSORLG00000004580srsf1a7890.155Oryzias_latipes
ENSDARG00000017843srsf1b7992.228ENSORLG00020009456srsf1a8390.155Oryzias_latipes_hni
ENSDARG00000017843srsf1b7992.228ENSORLG00015014384srsf1a8390.155Oryzias_latipes_hsok
ENSDARG00000017843srsf1b7290.341ENSOMEG00000004106srsf1a7188.068Oryzias_melastigma
ENSDARG00000017843srsf1b9996.735ENSOGAG00000025950-9996.735Otolemur_garnettii
ENSDARG00000017843srsf1b9992.245ENSOARG00000008323SRSF19992.245Ovis_aries
ENSDARG00000017843srsf1b9996.735ENSPPAG00000043403-9996.735Pan_paniscus
ENSDARG00000017843srsf1b9996.735ENSPPRG00000004238-9996.735Panthera_pardus
ENSDARG00000017843srsf1b9896.708ENSPTRG00000049077SRSF19696.708Pan_troglodytes
ENSDARG00000017843srsf1b9972.951ENSPANG00000030275-7568.878Papio_anubis
ENSDARG00000017843srsf1b9896.708ENSPANG00000022305-9696.708Papio_anubis
ENSDARG00000017843srsf1b10095.951ENSPKIG00000007204srsf1a10095.951Paramormyrops_kingsleyae
ENSDARG00000017843srsf1b9999.177ENSPKIG00000012857srsf1b9999.177Paramormyrops_kingsleyae
ENSDARG00000017843srsf1b7990.816ENSPSIG00000009000-7898.611Pelodiscus_sinensis
ENSDARG00000017843srsf1b8086.735ENSPMGG00000005467-7885.492Periophthalmus_magnuspinnatus
ENSDARG00000017843srsf1b7989.119ENSPMGG00000013112-7990.909Periophthalmus_magnuspinnatus
ENSDARG00000017843srsf1b9996.735ENSPEMG00000021416Srsf19996.735Peromyscus_maniculatus_bairdii
ENSDARG00000017843srsf1b9996.748ENSPCIG00000006076-9996.748Phascolarctos_cinereus
ENSDARG00000017843srsf1b8190.000ENSPFOG00000018325-7089.796Poecilia_formosa
ENSDARG00000017843srsf1b8190.000ENSPLAG00000008416srsf1b8089.796Poecilia_latipinna
ENSDARG00000017843srsf1b5090.244ENSPMEG00000014312-9887.805Poecilia_mexicana
ENSDARG00000017843srsf1b5090.244ENSPMEG00000020607-9887.805Poecilia_mexicana
ENSDARG00000017843srsf1b8190.000ENSPMEG00000002388-8089.796Poecilia_mexicana
ENSDARG00000017843srsf1b7992.228ENSPREG00000009667srsf1a7890.155Poecilia_reticulata
ENSDARG00000017843srsf1b9996.735ENSPPYG00000008240SRSF19996.735Pongo_abelii
ENSDARG00000017843srsf1b9996.735ENSPCAG00000005199SRSF19996.735Procavia_capensis
ENSDARG00000017843srsf1b9996.735ENSPCOG00000023654-9996.735Propithecus_coquereli
ENSDARG00000017843srsf1b8075.879ENSPCOG00000025736-9475.258Propithecus_coquereli
ENSDARG00000017843srsf1b7498.387ENSPVAG00000000519-7498.387Pteropus_vampyrus
ENSDARG00000017843srsf1b9997.119ENSPNAG00000014601srsf1b9997.119Pygocentrus_nattereri
ENSDARG00000017843srsf1b9691.949ENSPNAG00000022241srsf1a7992.857Pygocentrus_nattereri
ENSDARG00000017843srsf1b9996.735ENSRNOG00000050323Srsf19996.735Rattus_norvegicus
ENSDARG00000017843srsf1b9896.708ENSRBIG00000034445-9696.708Rhinopithecus_bieti
ENSDARG00000017843srsf1b9996.735ENSRROG00000041506-9996.735Rhinopithecus_roxellana
ENSDARG00000017843srsf1b9996.735ENSSBOG00000025377-9996.735Saimiri_boliviensis_boliviensis
ENSDARG00000017843srsf1b9996.748ENSSHAG00000002552-9996.748Sarcophilus_harrisii
ENSDARG00000017843srsf1b9997.143ENSSFOG00015004800srsf1a9897.143Scleropages_formosus
ENSDARG00000017843srsf1b7992.746ENSSMAG00000007018-7890.674Scophthalmus_maximus
ENSDARG00000017843srsf1b7988.060ENSSMAG00000009719-7987.065Scophthalmus_maximus
ENSDARG00000017843srsf1b9977.642ENSSDUG00000003929-8285.787Seriola_dumerili
ENSDARG00000017843srsf1b7993.264ENSSDUG00000011303-8391.192Seriola_dumerili
ENSDARG00000017843srsf1b7983.590ENSSLDG00000016868-7783.590Seriola_lalandi_dorsalis
ENSDARG00000017843srsf1b7993.264ENSSLDG00000010543-7891.192Seriola_lalandi_dorsalis
ENSDARG00000017843srsf1b9477.922ENSSLDG00000016895-7785.326Seriola_lalandi_dorsalis
ENSDARG00000017843srsf1b7496.685ENSSARG00000010949-6296.685Sorex_araneus
ENSDARG00000017843srsf1b9897.942ENSSPUG00000000804-9697.942Sphenodon_punctatus
ENSDARG00000017843srsf1b8087.560ENSSPAG00000014152-8186.603Stegastes_partitus
ENSDARG00000017843srsf1b7992.746ENSSPAG00000022562-7889.637Stegastes_partitus
ENSDARG00000017843srsf1b9996.735ENSSSCG00000017626-9996.735Sus_scrofa
ENSDARG00000017843srsf1b7497.826ENSTGUG00000008416-10097.826Taeniopygia_guttata
ENSDARG00000017843srsf1b7991.710ENSTRUG00000003691srsf1a7889.637Takifugu_rubripes
ENSDARG00000017843srsf1b7991.710ENSTNIG00000016223srsf1a7789.637Tetraodon_nigroviridis
ENSDARG00000017843srsf1b7495.028ENSTBEG00000015378-6295.028Tupaia_belangeri
ENSDARG00000017843srsf1b7496.175ENSTTRG00000007310SRSF110096.175Tursiops_truncatus
ENSDARG00000017843srsf1b9996.735ENSUAMG00000009858SRSF19996.735Ursus_americanus
ENSDARG00000017843srsf1b9896.708ENSUMAG00000000455-9696.708Ursus_maritimus
ENSDARG00000017843srsf1b9996.327ENSVPAG00000010094SRSF19996.327Vicugna_pacos
ENSDARG00000017843srsf1b9896.708ENSVVUG00000011882-9696.708Vulpes_vulpes
ENSDARG00000017843srsf1b9995.122ENSXETG00000008954srsf19990.530Xenopus_tropicalis
ENSDARG00000017843srsf1b7992.228ENSXMAG00000011766srsf1a7890.155Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-IEAComponent
GO:0005737cytoplasm-IEAComponent
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0016607nuclear speck21873635.IBAComponent
GO:0045292mRNA cis splicing, via spliceosome21873635.IBAProcess

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