EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000018049 (Gene tree)
Gene ID: 570994
Gene Symbol: sf3b2
Alias: fb53c07|wu:fb53c07|wu:fb93b08|zgc:136773
Full Name: splicing factor 3b%2C subunit 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 44484 bases
Position: chr7:6756206-6800689
Accession: ZDB-GENE-070928-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000007002	DUF382	PF04037.13	3e-58	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000173130	-	2677	-	-	- (aa)	-	-
ENSDART00000015873	-	2478	-	ENSDARP00000007002	825 (aa)	-	A7YT51

Gene Model

Click here to download ENSDARG00000018049's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000018049's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000018049	sf3b2	86	74.145	ENSG00000087365	SF3B2	99	88.199	Homo_sapiens
ENSDARG00000018049	sf3b2	96	73.263	ENSAPOG00000001974	sf3b2	93	71.412	Acanthochromis_polyacanthus
ENSDARG00000018049	sf3b2	86	73.554	ENSAMEG00000017206	SF3B2	79	73.582	Ailuropoda_melanoleuca
ENSDARG00000018049	sf3b2	99	72.293	ENSACIG00000000624	sf3b2	97	73.832	Amphilophus_citrinellus
ENSDARG00000018049	sf3b2	99	73.479	ENSAOCG00000009207	sf3b2	97	72.032	Amphiprion_ocellaris
ENSDARG00000018049	sf3b2	99	73.678	ENSAPEG00000002762	sf3b2	97	71.001	Amphiprion_percula
ENSDARG00000018049	sf3b2	92	74.247	ENSANAG00000029120	SF3B2	85	73.619	Aotus_nancymaae
ENSDARG00000018049	sf3b2	99	73.113	ENSACLG00000014771	sf3b2	97	72.203	Astatotilapia_calliptera
ENSDARG00000018049	sf3b2	99	78.431	ENSAMXG00000007929	sf3b2	98	79.354	Astyanax_mexicanus
ENSDARG00000018049	sf3b2	86	73.077	ENSBTAG00000002778	SF3B2	79	74.412	Bos_taurus
ENSDARG00000018049	sf3b2	70	46.080	WBGene00021004	sftb-2	89	48.201	Caenorhabditis_elegans
ENSDARG00000018049	sf3b2	86	74.145	ENSCJAG00000001656	SF3B2	82	73.670	Callithrix_jacchus
ENSDARG00000018049	sf3b2	86	73.554	ENSCAFG00000013033	SF3B2	79	73.582	Canis_familiaris
ENSDARG00000018049	sf3b2	86	73.554	ENSCAFG00020015382	SF3B2	79	73.582	Canis_lupus_dingo
ENSDARG00000018049	sf3b2	86	73.077	ENSCHIG00000011211	SF3B2	79	74.412	Capra_hircus
ENSDARG00000018049	sf3b2	86	73.187	ENSTSYG00000000959	SF3B2	82	73.533	Carlito_syrichta
ENSDARG00000018049	sf3b2	76	72.419	ENSCPOG00000008294	SF3B2	80	71.981	Cavia_porcellus
ENSDARG00000018049	sf3b2	93	74.211	ENSCCAG00000035256	SF3B2	86	73.582	Cebus_capucinus
ENSDARG00000018049	sf3b2	86	74.145	ENSCATG00000042240	SF3B2	82	73.481	Cercocebus_atys
ENSDARG00000018049	sf3b2	86	73.913	ENSCLAG00000016852	SF3B2	82	73.124	Chinchilla_lanigera
ENSDARG00000018049	sf3b2	86	74.145	ENSCSAG00000008121	SF3B2	80	73.481	Chlorocebus_sabaeus
ENSDARG00000018049	sf3b2	84	86.070	ENSCHOG00000001476	SF3B2	63	78.607	Choloepus_hoffmanni
ENSDARG00000018049	sf3b2	86	73.271	ENSCPBG00000022465	SF3B2	88	80.280	Chrysemys_picta_bellii
ENSDARG00000018049	sf3b2	76	60.876	ENSCING00000005665	-	100	59.815	Ciona_intestinalis
ENSDARG00000018049	sf3b2	65	68.224	ENSCSAVG00000002029	-	84	67.669	Ciona_savignyi
ENSDARG00000018049	sf3b2	86	74.145	ENSCANG00000039680	SF3B2	82	73.124	Colobus_angolensis_palliatus
ENSDARG00000018049	sf3b2	86	72.432	ENSCGRG00001015741	Sf3b2	82	73.670	Cricetulus_griseus_chok1gshd
ENSDARG00000018049	sf3b2	86	72.432	ENSCGRG00000018110	Sf3b2	85	73.670	Cricetulus_griseus_crigri
ENSDARG00000018049	sf3b2	87	76.171	ENSCSEG00000000230	sf3b2	97	71.256	Cynoglossus_semilaevis
ENSDARG00000018049	sf3b2	99	73.474	ENSCVAG00000003357	sf3b2	97	71.277	Cyprinodon_variegatus
ENSDARG00000018049	sf3b2	86	74.100	ENSDNOG00000009484	SF3B2	90	73.634	Dasypus_novemcinctus
ENSDARG00000018049	sf3b2	86	72.147	ENSDORG00000002495	Sf3b2	82	73.541	Dipodomys_ordii
ENSDARG00000018049	sf3b2	59	79.499	ENSETEG00000020284	SF3B2	64	79.263	Echinops_telfairi
ENSDARG00000018049	sf3b2	86	74.862	ENSEASG00005004508	SF3B2	79	74.033	Equus_asinus_asinus
ENSDARG00000018049	sf3b2	86	74.862	ENSECAG00000024461	SF3B2	79	74.033	Equus_caballus
ENSDARG00000018049	sf3b2	62	82.114	ENSEEUG00000014278	-	53	82.114	Erinaceus_europaeus
ENSDARG00000018049	sf3b2	99	73.966	ENSELUG00000005586	sf3b2	98	71.620	Esox_lucius
ENSDARG00000018049	sf3b2	86	73.554	ENSFCAG00000013289	SF3B2	82	73.770	Felis_catus
ENSDARG00000018049	sf3b2	78	68.519	ENSFALG00000014653	SF3B2	91	68.315	Ficedula_albicollis
ENSDARG00000018049	sf3b2	86	72.418	ENSFDAG00000019806	SF3B2	82	72.629	Fukomys_damarensis
ENSDARG00000018049	sf3b2	99	73.550	ENSFHEG00000020968	sf3b2	97	73.318	Fundulus_heteroclitus
ENSDARG00000018049	sf3b2	78	84.122	ENSGMOG00000012131	sf3b2	99	85.518	Gadus_morhua
ENSDARG00000018049	sf3b2	64	91.573	ENSGAFG00000001675	sf3b2	97	72.854	Gambusia_affinis
ENSDARG00000018049	sf3b2	78	82.576	ENSGACG00000019012	sf3b2	99	82.727	Gasterosteus_aculeatus
ENSDARG00000018049	sf3b2	100	68.156	ENSGAGG00000023916	SF3B2	100	68.693	Gopherus_agassizii
ENSDARG00000018049	sf3b2	77	88.056	ENSGGOG00000028448	SF3B2	78	88.056	Gorilla_gorilla
ENSDARG00000018049	sf3b2	99	73.231	ENSHBUG00000017349	sf3b2	97	72.318	Haplochromis_burtoni
ENSDARG00000018049	sf3b2	86	73.913	ENSHGLG00000010807	SF3B2	82	73.124	Heterocephalus_glaber_female
ENSDARG00000018049	sf3b2	86	74.145	ENSHGLG00100006361	SF3B2	82	73.124	Heterocephalus_glaber_male
ENSDARG00000018049	sf3b2	99	71.631	ENSHCOG00000016203	sf3b2	97	71.243	Hippocampus_comes
ENSDARG00000018049	sf3b2	99	78.978	ENSIPUG00000009383	sf3b2	99	79.094	Ictalurus_punctatus
ENSDARG00000018049	sf3b2	86	74.145	ENSSTOG00000028892	SF3B2	82	73.261	Ictidomys_tridecemlineatus
ENSDARG00000018049	sf3b2	86	73.505	ENSJJAG00000018193	Sf3b2	82	73.641	Jaculus_jaculus
ENSDARG00000018049	sf3b2	64	90.824	ENSKMAG00000020181	sf3b2	97	71.019	Kryptolebias_marmoratus
ENSDARG00000018049	sf3b2	99	73.248	ENSLBEG00000027739	sf3b2	92	79.635	Labrus_bergylta
ENSDARG00000018049	sf3b2	76	80.093	ENSLACG00000010429	SF3B2	74	78.024	Latimeria_chalumnae
ENSDARG00000018049	sf3b2	86	74.451	ENSLAFG00000002128	SF3B2	82	73.224	Loxodonta_africana
ENSDARG00000018049	sf3b2	86	74.044	ENSMFAG00000003064	SF3B2	82	73.379	Macaca_fascicularis
ENSDARG00000018049	sf3b2	86	69.494	ENSMMUG00000011743	SF3B2	82	67.655	Macaca_mulatta
ENSDARG00000018049	sf3b2	86	74.145	ENSMNEG00000034437	SF3B2	82	73.481	Macaca_nemestrina
ENSDARG00000018049	sf3b2	86	74.145	ENSMLEG00000029373	SF3B2	82	73.481	Mandrillus_leucophaeus
ENSDARG00000018049	sf3b2	99	74.572	ENSMAMG00000014103	sf3b2	97	72.336	Mastacembelus_armatus
ENSDARG00000018049	sf3b2	99	71.889	ENSMZEG00005020789	sf3b2	97	72.203	Maylandia_zebra
ENSDARG00000018049	sf3b2	50	86.921	ENSMAUG00000017040	Sf3b2	75	86.921	Mesocricetus_auratus
ENSDARG00000018049	sf3b2	86	73.066	ENSMICG00000016942	-	98	66.745	Microcebus_murinus
ENSDARG00000018049	sf3b2	86	73.871	ENSMICG00000008565	-	83	72.999	Microcebus_murinus
ENSDARG00000018049	sf3b2	86	73.677	ENSMOCG00000003136	Sf3b2	82	73.670	Microtus_ochrogaster
ENSDARG00000018049	sf3b2	99	71.047	ENSMMOG00000012928	sf3b2	97	70.233	Mola_mola
ENSDARG00000018049	sf3b2	76	74.611	ENSMODG00000025020	-	99	73.479	Monodelphis_domestica
ENSDARG00000018049	sf3b2	86	74.521	ENSMODG00000008490	-	88	74.145	Monodelphis_domestica
ENSDARG00000018049	sf3b2	99	72.438	ENSMALG00000015137	sf3b2	87	75.794	Monopterus_albus
ENSDARG00000018049	sf3b2	86	72.456	MGP_CAROLIEiJ_G0022539	Sf3b2	82	73.670	Mus_caroli
ENSDARG00000018049	sf3b2	86	73.677	ENSMUSG00000024853	Sf3b2	82	73.806	Mus_musculus
ENSDARG00000018049	sf3b2	86	72.727	MGP_PahariEiJ_G0014036	Sf3b2	82	73.297	Mus_pahari
ENSDARG00000018049	sf3b2	86	73.541	MGP_SPRETEiJ_G0023453	Sf3b2	82	73.842	Mus_spretus
ENSDARG00000018049	sf3b2	86	73.554	ENSMPUG00000011349	SF3B2	79	73.582	Mustela_putorius_furo
ENSDARG00000018049	sf3b2	86	72.802	ENSMLUG00000011136	SF3B2	79	73.582	Myotis_lucifugus
ENSDARG00000018049	sf3b2	86	73.878	ENSNGAG00000012103	Sf3b2	82	73.770	Nannospalax_galili
ENSDARG00000018049	sf3b2	86	69.730	ENSNLEG00000006007	SF3B2	60	83.240	Nomascus_leucogenys
ENSDARG00000018049	sf3b2	77	82.730	ENSMEUG00000000019	SF3B2	67	82.730	Notamacropus_eugenii
ENSDARG00000018049	sf3b2	99	62.896	ENSODEG00000017764	SF3B2	82	69.631	Octodon_degus
ENSDARG00000018049	sf3b2	99	72.914	ENSONIG00000013068	sf3b2	100	71.918	Oreochromis_niloticus
ENSDARG00000018049	sf3b2	86	65.229	ENSOANG00000012482	SF3B2	65	79.297	Ornithorhynchus_anatinus
ENSDARG00000018049	sf3b2	61	49.213	ENSOCUG00000024154	-	95	49.016	Oryctolagus_cuniculus
ENSDARG00000018049	sf3b2	86	74.692	ENSOCUG00000015722	-	98	66.475	Oryctolagus_cuniculus
ENSDARG00000018049	sf3b2	100	71.850	ENSORLG00000008235	sf3b2	97	69.669	Oryzias_latipes
ENSDARG00000018049	sf3b2	100	71.850	ENSORLG00020005357	sf3b2	100	69.669	Oryzias_latipes_hni
ENSDARG00000018049	sf3b2	100	72.077	ENSORLG00015022454	sf3b2	83	80.599	Oryzias_latipes_hsok
ENSDARG00000018049	sf3b2	100	70.930	ENSOMEG00000017480	sf3b2	100	72.748	Oryzias_melastigma
ENSDARG00000018049	sf3b2	86	71.135	ENSOGAG00000005799	SF3B2	80	70.166	Otolemur_garnettii
ENSDARG00000018049	sf3b2	99	65.675	ENSOARG00000002125	SF3B2	97	74.689	Ovis_aries
ENSDARG00000018049	sf3b2	86	74.145	ENSPPAG00000007359	SF3B2	82	71.716	Pan_paniscus
ENSDARG00000018049	sf3b2	86	73.554	ENSPPRG00000013334	SF3B2	82	73.770	Panthera_pardus
ENSDARG00000018049	sf3b2	86	73.554	ENSPTIG00000015022	SF3B2	82	73.224	Panthera_tigris_altaica
ENSDARG00000018049	sf3b2	86	74.145	ENSPTRG00000003912	SF3B2	82	71.716	Pan_troglodytes
ENSDARG00000018049	sf3b2	86	74.145	ENSPANG00000008593	SF3B2	82	73.481	Papio_anubis
ENSDARG00000018049	sf3b2	99	75.898	ENSPKIG00000016576	sf3b2	87	85.918	Paramormyrops_kingsleyae
ENSDARG00000018049	sf3b2	86	74.689	ENSPSIG00000003158	SF3B2	95	75.275	Pelodiscus_sinensis
ENSDARG00000018049	sf3b2	90	76.471	ENSPMGG00000000819	sf3b2	92	76.471	Periophthalmus_magnuspinnatus
ENSDARG00000018049	sf3b2	86	73.677	ENSPEMG00000015437	Sf3b2	82	73.397	Peromyscus_maniculatus_bairdii
ENSDARG00000018049	sf3b2	89	66.180	ENSPEMG00000015451	-	92	65.782	Peromyscus_maniculatus_bairdii
ENSDARG00000018049	sf3b2	87	71.698	ENSPCIG00000008381	SF3B2	85	73.031	Phascolarctos_cinereus
ENSDARG00000018049	sf3b2	99	73.550	ENSPFOG00000002552	sf3b2	97	73.318	Poecilia_formosa
ENSDARG00000018049	sf3b2	99	71.346	ENSPLAG00000001471	sf3b2	97	72.970	Poecilia_latipinna
ENSDARG00000018049	sf3b2	99	73.519	ENSPMEG00000013180	sf3b2	97	73.403	Poecilia_mexicana
ENSDARG00000018049	sf3b2	99	71.915	ENSPREG00000002665	sf3b2	97	74.941	Poecilia_reticulata
ENSDARG00000018049	sf3b2	56	67.623	ENSPPYG00000003034	-	71	68.050	Pongo_abelii
ENSDARG00000018049	sf3b2	86	74.827	ENSPCAG00000005129	SF3B2	79	74.136	Procavia_capensis
ENSDARG00000018049	sf3b2	86	74.008	ENSPCOG00000025375	SF3B2	82	72.988	Propithecus_coquereli
ENSDARG00000018049	sf3b2	53	92.105	ENSPVAG00000005466	-	72	92.105	Pteropus_vampyrus
ENSDARG00000018049	sf3b2	90	77.670	ENSPNYG00000023594	sf3b2	96	77.670	Pundamilia_nyererei
ENSDARG00000018049	sf3b2	99	76.301	ENSPNAG00000001891	sf3b2	98	76.994	Pygocentrus_nattereri
ENSDARG00000018049	sf3b2	86	72.320	ENSRNOG00000020412	Sf3b2	82	71.896	Rattus_norvegicus
ENSDARG00000018049	sf3b2	86	74.282	ENSRBIG00000034065	SF3B2	82	73.124	Rhinopithecus_bieti
ENSDARG00000018049	sf3b2	86	74.282	ENSRROG00000034496	SF3B2	82	73.124	Rhinopithecus_roxellana
ENSDARG00000018049	sf3b2	86	74.247	ENSSBOG00000026337	SF3B2	100	64.811	Saimiri_boliviensis_boliviensis
ENSDARG00000018049	sf3b2	97	57.043	ENSSHAG00000018043	-	86	61.962	Sarcophilus_harrisii
ENSDARG00000018049	sf3b2	76	75.155	ENSSHAG00000010933	-	79	72.138	Sarcophilus_harrisii
ENSDARG00000018049	sf3b2	100	73.055	ENSSFOG00015021125	sf3b2	100	72.717	Scleropages_formosus
ENSDARG00000018049	sf3b2	99	72.872	ENSSMAG00000004079	sf3b2	94	71.315	Scophthalmus_maximus
ENSDARG00000018049	sf3b2	64	91.651	ENSSLDG00000006838	sf3b2	97	73.618	Seriola_lalandi_dorsalis
ENSDARG00000018049	sf3b2	76	81.947	ENSSPUG00000009198	SF3B2	82	75.408	Sphenodon_punctatus
ENSDARG00000018049	sf3b2	99	72.036	ENSSPAG00000004406	sf3b2	98	70.935	Stegastes_partitus
ENSDARG00000018049	sf3b2	86	73.691	ENSSSCG00000012957	SF3B2	79	74.412	Sus_scrofa
ENSDARG00000018049	sf3b2	99	60.592	ENSTRUG00000007611	sf3b2	95	73.621	Takifugu_rubripes
ENSDARG00000018049	sf3b2	98	71.056	ENSTNIG00000007441	sf3b2	100	69.668	Tetraodon_nigroviridis
ENSDARG00000018049	sf3b2	84	84.138	ENSTBEG00000004258	SF3B2	78	84.138	Tupaia_belangeri
ENSDARG00000018049	sf3b2	86	73.859	ENSTTRG00000014339	SF3B2	79	73.582	Tursiops_truncatus
ENSDARG00000018049	sf3b2	83	72.973	ENSUAMG00000020754	SF3B2	76	72.642	Ursus_americanus
ENSDARG00000018049	sf3b2	86	73.554	ENSUMAG00000010994	SF3B2	79	73.582	Ursus_maritimus
ENSDARG00000018049	sf3b2	57	81.301	ENSVPAG00000008695	SF3B2	57	81.301	Vicugna_pacos
ENSDARG00000018049	sf3b2	86	73.554	ENSVVUG00000027029	SF3B2	79	73.582	Vulpes_vulpes
ENSDARG00000018049	sf3b2	87	68.904	ENSXETG00000008422	sf3b2	84	73.433	Xenopus_tropicalis
ENSDARG00000018049	sf3b2	80	79.118	ENSXCOG00000008943	sf3b2	92	78.235	Xiphophorus_couchianus
ENSDARG00000018049	sf3b2	64	91.573	ENSXMAG00000008467	sf3b2	97	71.363	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0005634	nucleus	-	IEA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component