EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000018107 (Gene tree)
Gene ID: 567288
Gene Symbol: rab3da
Alias: fi17a03|rab3d|wu:fi17a03
Full Name: RAB3D%2C member RAS oncogene family%2C a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 22364 bases
Position: chr1:52178916-52201279
Accession: ZDB-GENE-080722-14
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000113070	MMR_HSR1	PF01926.23	0.00027	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000143805	-	924	-	ENSDARP00000113070	168 (aa)	-	B8A666
ENSDART00000023757	-	866	-	ENSDARP00000028062	223 (aa)	-	F6NMA7

Gene Model

Click here to download ENSDARG00000018107's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000018107's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000018107	rab3da	85	40.559	ENSDARG00000058800	rab25a	68	40.559
ENSDARG00000018107	rab3da	87	36.486	ENSDARG00000102580	CU571310.1	70	36.486
ENSDARG00000018107	rab3da	82	34.286	ENSDARG00000100379	si:dkey-34d22.2	75	34.286
ENSDARG00000018107	rab3da	85	48.592	ENSDARG00000058425	rab35b	70	48.592
ENSDARG00000018107	rab3da	80	39.706	ENSDARG00000015807	rab22a	69	39.706
ENSDARG00000018107	rab3da	85	31.293	ENSDARG00000045027	rab9a	73	31.293
ENSDARG00000018107	rab3da	86	40.278	ENSDARG00000035188	rab14l	67	40.278
ENSDARG00000018107	rab3da	82	45.000	ENSDARG00000036501	rab39bb	66	45.000
ENSDARG00000018107	rab3da	73	33.333	ENSDARG00000010977	rab34b	54	33.577
ENSDARG00000018107	rab3da	81	40.000	ENSDARG00000026098	si:dkey-13a21.4	68	40.000
ENSDARG00000018107	rab3da	81	33.577	ENSDARG00000098497	hrasa	71	33.577
ENSDARG00000018107	rab3da	75	36.154	ENSDARG00000087243	zgc:100918	63	36.154
ENSDARG00000018107	rab3da	85	52.817	ENSDARG00000103934	megf8	82	52.817
ENSDARG00000018107	rab3da	80	45.185	ENSDARG00000103714	rab6a	65	45.185
ENSDARG00000018107	rab3da	71	39.344	ENSDARG00000057394	rab33a	52	39.344
ENSDARG00000018107	rab3da	85	48.592	ENSDARG00000058044	rab1ba	70	50.000
ENSDARG00000018107	rab3da	85	54.225	ENSDARG00000034771	rab13	71	54.225
ENSDARG00000018107	rab3da	83	41.727	ENSDARG00000090086	rab11bb	64	41.727
ENSDARG00000018107	rab3da	60	41.584	ENSDARG00000099205	CABZ01081908.1	88	41.584
ENSDARG00000018107	rab3da	83	46.043	ENSDARG00000037884	rab30	69	46.043
ENSDARG00000018107	rab3da	86	48.966	ENSDARG00000037967	si:dkey-16l2.16	99	51.261
ENSDARG00000018107	rab3da	81	33.577	ENSDARG00000005651	hrasb	94	33.577
ENSDARG00000018107	rab3da	77	52.308	ENSDARG00000033056	zgc:171927	62	52.308
ENSDARG00000018107	rab3da	88	84.459	ENSDARG00000114797	rab3b	68	84.459
ENSDARG00000018107	rab3da	80	39.552	ENSDARG00000018602	rab5aa	62	39.552
ENSDARG00000018107	rab3da	81	33.577	ENSDARG00000013161	zgc:55558	72	33.577
ENSDARG00000018107	rab3da	85	40.690	ENSDARG00000034215	rab42a	68	40.690
ENSDARG00000018107	rab3da	85	42.657	ENSDARG00000041450	rab11a	67	42.657
ENSDARG00000018107	rab3da	85	47.887	ENSDARG00000026484	rab15	67	47.887
ENSDARG00000018107	rab3da	83	43.571	ENSDARG00000020261	rab2a	66	43.571
ENSDARG00000018107	rab3da	80	43.704	ENSDARG00000034522	rab6ba	65	43.704
ENSDARG00000018107	rab3da	81	31.387	ENSDARG00000010844	kras	72	31.387
ENSDARG00000018107	rab3da	80	48.889	ENSDARG00000055291	rab18a	65	48.889
ENSDARG00000018107	rab3da	86	40.972	ENSDARG00000074246	rab14	67	40.972
ENSDARG00000018107	rab3da	85	49.296	ENSDARG00000102078	CABZ01072548.1	72	49.296
ENSDARG00000018107	rab3da	85	41.259	ENSDARG00000014340	rab11al	66	41.259
ENSDARG00000018107	rab3da	93	44.586	ENSDARG00000089428	rab12	67	44.586
ENSDARG00000018107	rab3da	85	49.650	ENSDARG00000056479	rab1bb	71	49.650
ENSDARG00000018107	rab3da	85	31.973	ENSDARG00000103391	rab9b	72	31.973
ENSDARG00000018107	rab3da	82	45.714	ENSDARG00000019312	rab39ba	66	45.714
ENSDARG00000018107	rab3da	86	40.972	ENSDARG00000052954	rab25b	69	40.972
ENSDARG00000018107	rab3da	81	34.307	ENSDARG00000038225	nras	71	34.307
ENSDARG00000018107	rab3da	79	50.376	ENSDARG00000098344	rab18b	64	50.376
ENSDARG00000018107	rab3da	77	38.060	ENSDARG00000021287	rab7b	65	38.060
ENSDARG00000018107	rab3da	85	49.296	ENSDARG00000052263	rab1aa	71	49.296
ENSDARG00000018107	rab3da	80	36.029	ENSDARG00000052290	rab33ba	57	36.029
ENSDARG00000018107	rab3da	73	34.677	ENSDARG00000036252	rras2	67	34.559
ENSDARG00000018107	rab3da	73	38.211	ENSDARG00000004151	rab23	59	36.620
ENSDARG00000018107	rab3da	85	49.650	ENSDARG00000029663	rab1ab	71	49.650
ENSDARG00000018107	rab3da	80	32.353	ENSDARG00000006553	rras	68	32.353
ENSDARG00000018107	rab3da	80	38.806	ENSDARG00000007257	rab5ab	62	38.806
ENSDARG00000018107	rab3da	82	43.478	ENSDARG00000029885	rab41	65	43.478
ENSDARG00000018107	rab3da	75	35.385	ENSDARG00000020497	rab7a	63	35.385
ENSDARG00000018107	rab3da	83	42.446	ENSDARG00000041878	rab11ba	64	42.446
ENSDARG00000018107	rab3da	80	40.441	ENSDARG00000003257	zgc:101559	58	40.441
ENSDARG00000018107	rab3da	80	43.704	ENSDARG00000031343	rab6bb	65	43.704

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000018107	rab3da	96	91.304	ENSACAG00000016810	RAB3D	69	91.304	Anolis_carolinensis
ENSDARG00000018107	rab3da	96	83.851	ENSHCOG00000017123	-	72	83.851	Hippocampus_comes
ENSDARG00000018107	rab3da	93	83.974	ENSKMAG00000018973	-	70	83.974	Kryptolebias_marmoratus
ENSDARG00000018107	rab3da	95	83.125	ENSOCUG00000025381	RAB3D	72	83.125	Oryctolagus_cuniculus
ENSDARG00000018107	rab3da	95	77.987	ENSORLG00000016555	rab3db	71	81.081	Oryzias_latipes
ENSDARG00000018107	rab3da	96	76.398	ENSORLG00020021663	rab3db	73	76.398	Oryzias_latipes_hni
ENSDARG00000018107	rab3da	96	75.776	ENSORLG00015014594	rab3db	73	75.776	Oryzias_latipes_hsok
ENSDARG00000018107	rab3da	96	91.304	ENSPKIG00000009021	rab3db	72	91.304	Paramormyrops_kingsleyae
ENSDARG00000018107	rab3da	96	86.957	ENSPCIG00000017722	RAB3D	72	86.957	Phascolarctos_cinereus
ENSDARG00000018107	rab3da	96	86.957	ENSSHAG00000007153	RAB3D	70	86.957	Sarcophilus_harrisii

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005768	endosome	21873635.	IBA	Component
GO:0005886	plasma membrane	21873635.	IBA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006904	vesicle docking involved in exocytosis	21873635.	IBA	Process
GO:0008021	synaptic vesicle	21873635.	IBA	Component
GO:0009306	protein secretion	21873635.	IBA	Process
GO:0017157	regulation of exocytosis	21873635.	IBA	Process
GO:0031982	vesicle	21873635.	IBA	Component
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process
GO:0072659	protein localization to plasma membrane	21873635.	IBA	Process