EuRBPDB

Description

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000018272 (Gene tree)
Gene ID: 449009
Gene Symbol: wdr33
Alias: FLJ11294-like (H. sapiens)|zgc:110570
Full Name: WD repeat domain 33
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 33314
Position: chr2: 5410432-5443745
Accession: ZDB-GENE-040924-3
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000138885	-	4793	-	ENSDARP00000115996	1125 (aa)	-	B8JMA9
ENSDART00000121641	-	1386	-	ENSDARP00000127258	290 (aa)	-	U3JAJ0
ENSDART00000025131	-	4202	XM_005163232	ENSDARP00000027484	1102 (aa)	XP_005163289	F1QJZ5

Gene Model

Click here to download ENSDARG00000018272's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000018272's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000018272	wdr33	60	70.286	FBgn0046222	Wdr33	57	67.152	Drosophila_melanogaster
ENSDARG00000018272	wdr33	83	86.420	ENSG00000136709	WDR33	99	97.059	Homo_sapiens
ENSDARG00000018272	wdr33	83	87.243	ENSMUSG00000024400	Wdr33	98	95.041	Mus_musculus
ENSDARG00000018272	wdr33	53	39.103	YNL317W		78	39.142	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component