EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000018425 (Gene tree)
Gene ID: 100007313
Gene Symbol: ddx61
Alias: fk48d07|p54b|si:ch211-175g6.7|wu:fk48d07
Full Name: DEAD (Asp-Glu-Ala-Asp) box helicase 61
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 17081 bases
Position: chr16:25682577-25699657
Accession: ZDB-GENE-030131-6611
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000102837	DEAD	PF00270.29	1.6e-39	1	1
ENSDARP00000129311	DEAD	PF00270.29	1.6e-39	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000114495	-	2453	-	ENSDARP00000102837	483 (aa)	-	E7F1G8
ENSDART00000155899	-	3732	XM_001340824	ENSDARP00000129311	483 (aa)	XP_001340860	E7F1G8

Gene Model

Click here to download ENSDARG00000018425's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000018425's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000018425	ddx61	78	35.789	ENSDARG00000036069	ddx39b	87	35.789
ENSDARG00000018425	ddx61	98	79.046	ENSDARG00000061338	ddx6	99	78.838
ENSDARG00000018425	ddx61	78	34.243	ENSDARG00000044325	zgc:193690	81	33.747
ENSDARG00000018425	ddx61	78	35.958	ENSDARG00000015111	ddx39ab	89	35.958
ENSDARG00000018425	ddx61	77	30.769	ENSDARG00000020573	ddx3xa	57	30.769
ENSDARG00000018425	ddx61	78	35.171	ENSDARG00000006225	ddx39aa	89	35.171
ENSDARG00000018425	ddx61	69	32.123	ENSDARG00000009864	ddx55	60	32.123
ENSDARG00000018425	ddx61	76	38.441	ENSDARG00000092115	eif4a1a	91	38.441
ENSDARG00000018425	ddx61	68	30.267	ENSDARG00000022177	ddx59	67	30.267
ENSDARG00000018425	ddx61	71	32.410	ENSDARG00000014373	ddx4	52	32.320
ENSDARG00000018425	ddx61	78	37.566	ENSDARG00000102978	eif4a3	92	37.566
ENSDARG00000018425	ddx61	73	32.240	ENSDARG00000038068	ddx5	73	32.240
ENSDARG00000018425	ddx61	77	31.884	ENSDARG00000021945	ddx23	52	31.894
ENSDARG00000018425	ddx61	79	34.343	ENSDARG00000061204	ddx20	50	34.343
ENSDARG00000018425	ddx61	66	33.030	ENSDARG00000030789	ddx18	50	33.636
ENSDARG00000018425	ddx61	75	32.976	ENSDARG00000012899	ddx49	79	32.976
ENSDARG00000018425	ddx61	75	35.000	ENSDARG00000005699	ddx19	77	35.000
ENSDARG00000018425	ddx61	76	38.441	ENSDARG00000016477	eif4a2	90	38.441
ENSDARG00000018425	ddx61	68	45.098	ENSDARG00000032117	ddx1	53	45.098
ENSDARG00000018425	ddx61	68	33.529	ENSDARG00000010873	DDX17	72	32.107
ENSDARG00000018425	ddx61	76	38.441	ENSDARG00000003032	eif4a1b	91	38.441
ENSDARG00000018425	ddx61	77	31.500	ENSDARG00000005774	ddx3xb	99	32.432

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000018425	ddx61	76	91.870	ENSAPOG00000023627	-	94	91.870	Acanthochromis_polyacanthus
ENSDARG00000018425	ddx61	99	83.436	ENSAPOG00000014829	ddx61	99	83.436	Acanthochromis_polyacanthus
ENSDARG00000018425	ddx61	98	79.873	ENSACIG00000018355	-	97	79.873	Amphilophus_citrinellus
ENSDARG00000018425	ddx61	99	84.458	ENSAOCG00000007627	ddx61	99	84.458	Amphiprion_ocellaris
ENSDARG00000018425	ddx61	99	85.921	ENSAOCG00000006269	-	99	85.921	Amphiprion_ocellaris
ENSDARG00000018425	ddx61	99	85.921	ENSAPEG00000021368	-	99	85.921	Amphiprion_percula
ENSDARG00000018425	ddx61	99	84.458	ENSAPEG00000007293	ddx61	99	84.458	Amphiprion_percula
ENSDARG00000018425	ddx61	99	85.921	ENSAPEG00000020642	-	99	85.921	Amphiprion_percula
ENSDARG00000018425	ddx61	98	85.325	ENSATEG00000011302	ddx61	98	85.325	Anabas_testudineus
ENSDARG00000018425	ddx61	99	85.979	ENSATEG00000005424	-	98	85.979	Anabas_testudineus
ENSDARG00000018425	ddx61	98	87.076	ENSACLG00000003260	-	97	87.076	Astatotilapia_calliptera
ENSDARG00000018425	ddx61	98	85.474	ENSACLG00000027620	ddx61	99	85.474	Astatotilapia_calliptera
ENSDARG00000018425	ddx61	98	88.535	ENSAMXG00000032542	ddx61	98	88.608	Astyanax_mexicanus
ENSDARG00000018425	ddx61	99	85.010	ENSAMXG00000033980	-	99	85.010	Astyanax_mexicanus
ENSDARG00000018425	ddx61	99	85.010	ENSCSEG00000009893	-	99	85.010	Cynoglossus_semilaevis
ENSDARG00000018425	ddx61	98	85.865	ENSCVAG00000011006	-	97	85.865	Cyprinodon_variegatus
ENSDARG00000018425	ddx61	98	87.448	ENSELUG00000020545	ddx61	97	87.448	Esox_lucius
ENSDARG00000018425	ddx61	99	86.004	ENSELUG00000022538	-	100	86.004	Esox_lucius
ENSDARG00000018425	ddx61	99	84.221	ENSFHEG00000015487	-	99	84.221	Fundulus_heteroclitus
ENSDARG00000018425	ddx61	97	86.071	ENSGMOG00000013762	ddx61	99	85.567	Gadus_morhua
ENSDARG00000018425	ddx61	67	80.851	ENSGMOG00000003561	-	100	81.459	Gadus_morhua
ENSDARG00000018425	ddx61	99	85.477	ENSGAFG00000015865	-	98	85.477	Gambusia_affinis
ENSDARG00000018425	ddx61	98	84.906	ENSGACG00000002413	-	98	84.696	Gasterosteus_aculeatus
ENSDARG00000018425	ddx61	98	84.600	ENSGACG00000003401	ddx61	99	84.600	Gasterosteus_aculeatus
ENSDARG00000018425	ddx61	98	87.076	ENSHBUG00000017033	-	97	87.076	Haplochromis_burtoni
ENSDARG00000018425	ddx61	98	85.684	ENSHBUG00000017832	ddx61	99	85.684	Haplochromis_burtoni
ENSDARG00000018425	ddx61	99	84.600	ENSHCOG00000012238	-	99	84.600	Hippocampus_comes
ENSDARG00000018425	ddx61	99	82.609	ENSHCOG00000008184	ddx61	99	82.609	Hippocampus_comes
ENSDARG00000018425	ddx61	97	87.633	ENSIPUG00000012823	DDX6	98	87.342	Ictalurus_punctatus
ENSDARG00000018425	ddx61	99	85.325	ENSIPUG00000008367	-	99	85.474	Ictalurus_punctatus
ENSDARG00000018425	ddx61	99	85.744	ENSKMAG00000007213	-	99	85.744	Kryptolebias_marmoratus
ENSDARG00000018425	ddx61	99	84.694	ENSLBEG00000016890	-	99	84.694	Labrus_bergylta
ENSDARG00000018425	ddx61	98	85.654	ENSLBEG00000001740	ddx61	98	85.654	Labrus_bergylta
ENSDARG00000018425	ddx61	98	83.402	ENSLACG00000015214	ddx61	99	83.402	Latimeria_chalumnae
ENSDARG00000018425	ddx61	96	47.992	ENSLOCG00000004352	ddx61	94	48.626	Lepisosteus_oculatus
ENSDARG00000018425	ddx61	99	86.270	ENSMAMG00000005559	-	99	86.270	Mastacembelus_armatus
ENSDARG00000018425	ddx61	99	83.640	ENSMAMG00000005321	ddx61	99	83.640	Mastacembelus_armatus
ENSDARG00000018425	ddx61	98	85.684	ENSMZEG00005003556	ddx61	99	85.684	Maylandia_zebra
ENSDARG00000018425	ddx61	98	87.076	ENSMZEG00005026268	-	97	87.076	Maylandia_zebra
ENSDARG00000018425	ddx61	99	75.051	ENSMMOG00000013694	-	99	75.051	Mola_mola
ENSDARG00000018425	ddx61	99	83.195	ENSMMOG00000007415	ddx61	99	83.195	Mola_mola
ENSDARG00000018425	ddx61	73	74.221	ENSMMOG00000008825	-	99	69.405	Mola_mola
ENSDARG00000018425	ddx61	99	86.335	ENSMALG00000013817	-	99	86.335	Monopterus_albus
ENSDARG00000018425	ddx61	99	73.608	ENSMALG00000013776	ddx61	97	73.608	Monopterus_albus
ENSDARG00000018425	ddx61	99	78.170	ENSNBRG00000015800	ddx61	100	78.170	Neolamprologus_brichardi
ENSDARG00000018425	ddx61	98	79.661	ENSNBRG00000015075	-	97	79.661	Neolamprologus_brichardi
ENSDARG00000018425	ddx61	99	85.595	ENSONIG00000011418	ddx61	100	85.595	Oreochromis_niloticus
ENSDARG00000018425	ddx61	98	87.076	ENSONIG00000013748	-	97	87.076	Oreochromis_niloticus
ENSDARG00000018425	ddx61	98	86.017	ENSORLG00000009178	-	97	86.017	Oryzias_latipes
ENSDARG00000018425	ddx61	98	86.441	ENSORLG00020015515	-	97	86.441	Oryzias_latipes_hni
ENSDARG00000018425	ddx61	98	86.229	ENSORLG00015006764	-	97	86.229	Oryzias_latipes_hsok
ENSDARG00000018425	ddx61	98	77.167	ENSOMEG00000022326	-	99	77.167	Oryzias_melastigma
ENSDARG00000018425	ddx61	98	88.655	ENSPKIG00000024264	ddx61	99	87.474	Paramormyrops_kingsleyae
ENSDARG00000018425	ddx61	99	80.208	ENSPMGG00000013355	-	98	80.208	Periophthalmus_magnuspinnatus
ENSDARG00000018425	ddx61	99	86.279	ENSPFOG00000005750	-	98	86.279	Poecilia_formosa
ENSDARG00000018425	ddx61	99	86.279	ENSPLAG00000000403	-	98	86.279	Poecilia_latipinna
ENSDARG00000018425	ddx61	98	86.792	ENSPMEG00000023737	-	98	86.792	Poecilia_mexicana
ENSDARG00000018425	ddx61	98	87.076	ENSPNYG00000003986	-	97	87.076	Pundamilia_nyererei
ENSDARG00000018425	ddx61	98	79.492	ENSPNYG00000015045	ddx61	99	79.492	Pundamilia_nyererei
ENSDARG00000018425	ddx61	98	90.084	ENSPNAG00000024072	ddx61	99	90.084	Pygocentrus_nattereri
ENSDARG00000018425	ddx61	99	85.481	ENSPNAG00000008742	-	99	85.481	Pygocentrus_nattereri
ENSDARG00000018425	ddx61	97	87.975	ENSSFOG00015021404	ddx61	97	87.866	Scleropages_formosus
ENSDARG00000018425	ddx61	99	85.421	ENSSMAG00000001793	-	99	85.421	Scophthalmus_maximus
ENSDARG00000018425	ddx61	97	85.835	ENSSMAG00000006591	ddx61	98	85.000	Scophthalmus_maximus
ENSDARG00000018425	ddx61	99	84.836	ENSSDUG00000007530	-	99	84.836	Seriola_dumerili
ENSDARG00000018425	ddx61	97	86.681	ENSSDUG00000009713	ddx61	97	86.013	Seriola_dumerili
ENSDARG00000018425	ddx61	97	86.681	ENSSLDG00000000132	ddx61	97	86.013	Seriola_lalandi_dorsalis
ENSDARG00000018425	ddx61	99	84.836	ENSSLDG00000007608	-	99	84.836	Seriola_lalandi_dorsalis
ENSDARG00000018425	ddx61	97	87.207	ENSSPAG00000001578	ddx61	99	85.567	Stegastes_partitus
ENSDARG00000018425	ddx61	99	85.921	ENSSPAG00000013878	-	99	85.921	Stegastes_partitus
ENSDARG00000018425	ddx61	99	83.778	ENSTRUG00000012432	-	99	83.778	Takifugu_rubripes
ENSDARG00000018425	ddx61	98	85.084	ENSTNIG00000003560	-	99	85.084	Tetraodon_nigroviridis
ENSDARG00000018425	ddx61	99	77.178	ENSXCOG00000001406	-	98	77.178	Xiphophorus_couchianus
ENSDARG00000018425	ddx61	99	85.892	ENSXMAG00000016090	-	98	85.892	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0009408	response to heat	27489304.	IGI	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0034063	stress granule assembly	27489304.	IGI	Process
GO:0034063	stress granule assembly	27489304.	IMP	Process
GO:0036464	cytoplasmic ribonucleoprotein granule	27489304.	IDA	Component