EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000018494 (Gene tree)
Gene ID: 30432
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 7266 bases
Position: chr5:43798345-43805610
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000105995	TUDOR	PF00567.24	2.5e-07	1	1
ENSDARP00000017636	TUDOR	PF00567.24	3.7e-07	1	1
ENSDARP00000017636	SMN	PF06003.12	1.5e-146	1	1
ENSDARP00000105995	SMN	PF06003.12	3e-142	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000127956	-	996	-	ENSDARP00000105995	279 (aa)	-	Q6P934
ENSDART00000028099	-	1019	-	ENSDARP00000017636	281 (aa)	-	Q9W6S8

Gene Model

Click here to download ENSDARG00000018494's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000018494's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000018494	smn1	96	53.285	ENSG00000205571	SMN2	80	72.973	Homo_sapiens
ENSDARG00000018494	smn1	96	53.285	ENSG00000172062	SMN1	93	52.669	Homo_sapiens
ENSDARG00000018494	smn1	100	62.587	ENSAPOG00000011324	smn1	100	64.808	Acanthochromis_polyacanthus
ENSDARG00000018494	smn1	96	51.429	ENSAMEG00000003316	-	91	49.818	Ailuropoda_melanoleuca
ENSDARG00000018494	smn1	62	65.169	ENSACIG00000007598	smn1	97	64.407	Amphilophus_citrinellus
ENSDARG00000018494	smn1	93	63.433	ENSACIG00000019772	-	99	59.140	Amphilophus_citrinellus
ENSDARG00000018494	smn1	100	65.505	ENSAOCG00000024444	smn1	100	64.808	Amphiprion_ocellaris
ENSDARG00000018494	smn1	100	65.505	ENSAPEG00000016504	smn1	100	64.808	Amphiprion_percula
ENSDARG00000018494	smn1	95	61.172	ENSATEG00000002182	smn1	82	63.004	Anabas_testudineus
ENSDARG00000018494	smn1	71	52.451	ENSAPLG00000010912	-	99	50.251	Anas_platyrhynchos
ENSDARG00000018494	smn1	98	54.122	ENSACAG00000010017	-	96	54.093	Anolis_carolinensis
ENSDARG00000018494	smn1	96	52.536	ENSANAG00000032133	-	93	52.536	Aotus_nancymaae
ENSDARG00000018494	smn1	98	56.738	ENSACLG00000007308	smn1	95	61.131	Astatotilapia_calliptera
ENSDARG00000018494	smn1	99	68.929	ENSAMXG00000013884	smn1	100	69.643	Astyanax_mexicanus
ENSDARG00000018494	smn1	96	49.488	ENSBTAG00000005743	SMN2	95	45.791	Bos_taurus
ENSDARG00000018494	smn1	96	52.000	ENSCJAG00000016290	-	93	51.773	Callithrix_jacchus
ENSDARG00000018494	smn1	96	51.087	ENSCAFG00000007812	SMN	94	48.364	Canis_familiaris
ENSDARG00000018494	smn1	98	50.534	ENSCAFG00020019229	-	90	47.857	Canis_lupus_dingo
ENSDARG00000018494	smn1	96	50.181	ENSCHIG00000015559	-	93	45.485	Capra_hircus
ENSDARG00000018494	smn1	97	53.214	ENSTSYG00000012058	-	96	52.500	Carlito_syrichta
ENSDARG00000018494	smn1	73	47.115	ENSCAPG00000011021	-	84	41.584	Cavia_aperea
ENSDARG00000018494	smn1	95	50.345	ENSCPOG00000012328	-	94	51.590	Cavia_porcellus
ENSDARG00000018494	smn1	95	51.049	ENSCPOG00000036973	-	93	51.429	Cavia_porcellus
ENSDARG00000018494	smn1	95	48.708	ENSCCAG00000018127	-	93	52.650	Cebus_capucinus
ENSDARG00000018494	smn1	96	53.650	ENSCATG00000037002	-	93	52.941	Cercocebus_atys
ENSDARG00000018494	smn1	95	50.909	ENSCLAG00000000284	-	93	51.056	Chinchilla_lanigera
ENSDARG00000018494	smn1	96	54.745	ENSCSAG00000015688	-	93	53.873	Chlorocebus_sabaeus
ENSDARG00000018494	smn1	98	51.379	ENSCPBG00000010968	-	99	53.025	Chrysemys_picta_bellii
ENSDARG00000018494	smn1	96	53.147	ENSCANG00000038242	-	94	54.444	Colobus_angolensis_palliatus
ENSDARG00000018494	smn1	96	46.886	ENSCANG00000033324	-	89	50.360	Colobus_angolensis_palliatus
ENSDARG00000018494	smn1	96	51.799	ENSCGRG00001017959	-	94	50.709	Cricetulus_griseus_chok1gshd
ENSDARG00000018494	smn1	98	38.095	ENSCGRG00001016998	-	99	38.328	Cricetulus_griseus_chok1gshd
ENSDARG00000018494	smn1	96	51.799	ENSCGRG00000007698	Smn1	94	50.709	Cricetulus_griseus_crigri
ENSDARG00000018494	smn1	96	51.943	ENSCSEG00000015227	smn1	99	53.472	Cynoglossus_semilaevis
ENSDARG00000018494	smn1	100	59.862	ENSCVAG00000007498	smn1	100	62.369	Cyprinodon_variegatus
ENSDARG00000018494	smn1	77	47.248	ENSDNOG00000007283	-	85	46.305	Dasypus_novemcinctus
ENSDARG00000018494	smn1	96	42.456	ENSDORG00000007082	Smn1	92	44.361	Dipodomys_ordii
ENSDARG00000018494	smn1	55	50.932	ENSETEG00000001406	-	76	49.057	Echinops_telfairi
ENSDARG00000018494	smn1	98	38.339	ENSEBUG00000011902	smn1	96	38.591	Eptatretus_burgeri
ENSDARG00000018494	smn1	89	49.020	ENSEASG00005018000	-	89	46.923	Equus_asinus_asinus
ENSDARG00000018494	smn1	96	51.812	ENSECAG00000015215	-	95	49.822	Equus_caballus
ENSDARG00000018494	smn1	88	49.225	ENSEEUG00000015777	-	100	47.148	Erinaceus_europaeus
ENSDARG00000018494	smn1	100	66.901	ENSELUG00000018067	smn1	100	65.141	Esox_lucius
ENSDARG00000018494	smn1	96	52.364	ENSFCAG00000028292	SMN	94	51.601	Felis_catus
ENSDARG00000018494	smn1	95	57.836	ENSFALG00000012320	-	95	56.343	Ficedula_albicollis
ENSDARG00000018494	smn1	96	48.621	ENSFDAG00000017683	-	94	49.485	Fukomys_damarensis
ENSDARG00000018494	smn1	97	61.429	ENSFHEG00000018508	smn1	100	63.309	Fundulus_heteroclitus
ENSDARG00000018494	smn1	100	60.142	ENSGMOG00000017279	smn1	98	60.854	Gadus_morhua
ENSDARG00000018494	smn1	98	55.435	ENSGALG00000002430	SMN	100	53.817	Gallus_gallus
ENSDARG00000018494	smn1	100	62.759	ENSGAFG00000009501	smn1	100	64.583	Gambusia_affinis
ENSDARG00000018494	smn1	100	59.011	ENSGACG00000010584	smn1	97	63.701	Gasterosteus_aculeatus
ENSDARG00000018494	smn1	97	32.335	ENSGAGG00000013639	-	95	37.915	Gopherus_agassizii
ENSDARG00000018494	smn1	98	52.941	ENSGAGG00000011374	-	98	53.242	Gopherus_agassizii
ENSDARG00000018494	smn1	59	56.805	ENSGGOG00000026704	-	80	56.140	Gorilla_gorilla
ENSDARG00000018494	smn1	92	47.893	ENSGGOG00000003872	-	93	49.242	Gorilla_gorilla
ENSDARG00000018494	smn1	100	61.268	ENSHBUG00000013987	smn1	100	64.184	Haplochromis_burtoni
ENSDARG00000018494	smn1	96	50.360	ENSHGLG00000001018	-	94	49.474	Heterocephalus_glaber_female
ENSDARG00000018494	smn1	96	51.748	ENSHGLG00000001905	-	95	50.538	Heterocephalus_glaber_female
ENSDARG00000018494	smn1	93	51.986	ENSHGLG00100018676	-	96	50.741	Heterocephalus_glaber_male
ENSDARG00000018494	smn1	96	50.360	ENSHGLG00100011252	-	94	49.474	Heterocephalus_glaber_male
ENSDARG00000018494	smn1	94	65.672	ENSHCOG00000017136	smn1	89	64.045	Hippocampus_comes
ENSDARG00000018494	smn1	100	72.598	ENSIPUG00000012580	smn1	89	70.819	Ictalurus_punctatus
ENSDARG00000018494	smn1	92	49.446	ENSSTOG00000012288	-	94	50.965	Ictidomys_tridecemlineatus
ENSDARG00000018494	smn1	59	44.311	ENSJJAG00000014853	-	76	48.387	Jaculus_jaculus
ENSDARG00000018494	smn1	100	59.930	ENSKMAG00000007239	smn1	100	59.933	Kryptolebias_marmoratus
ENSDARG00000018494	smn1	100	60.870	ENSLBEG00000022550	smn1	100	64.460	Labrus_bergylta
ENSDARG00000018494	smn1	100	38.776	ENSLACG00000009808	-	95	37.884	Latimeria_chalumnae
ENSDARG00000018494	smn1	100	60.777	ENSLOCG00000011339	smn1	100	61.484	Lepisosteus_oculatus
ENSDARG00000018494	smn1	95	51.812	ENSLAFG00000003425	-	90	51.971	Loxodonta_africana
ENSDARG00000018494	smn1	96	54.380	ENSMFAG00000031523	SMN1	96	52.941	Macaca_fascicularis
ENSDARG00000018494	smn1	96	50.730	ENSMFAG00000008812	-	93	50.000	Macaca_fascicularis
ENSDARG00000018494	smn1	96	50.538	ENSMMUG00000030594	-	93	49.648	Macaca_mulatta
ENSDARG00000018494	smn1	96	54.380	ENSMMUG00000020214	SMN1	94	53.285	Macaca_mulatta
ENSDARG00000018494	smn1	75	44.186	ENSMNEG00000036423	-	80	42.654	Macaca_nemestrina
ENSDARG00000018494	smn1	96	54.182	ENSMNEG00000035094	-	94	53.333	Macaca_nemestrina
ENSDARG00000018494	smn1	96	54.380	ENSMLEG00000041902	-	94	53.521	Mandrillus_leucophaeus
ENSDARG00000018494	smn1	100	63.763	ENSMAMG00000011034	smn1	100	60.403	Mastacembelus_armatus
ENSDARG00000018494	smn1	100	61.620	ENSMZEG00005013634	smn1	100	63.066	Maylandia_zebra
ENSDARG00000018494	smn1	72	50.000	ENSMGAG00000008889	-	99	48.020	Meleagris_gallopavo
ENSDARG00000018494	smn1	95	51.812	ENSMAUG00000010262	Smn1	94	51.079	Mesocricetus_auratus
ENSDARG00000018494	smn1	56	58.228	ENSMICG00000034708	-	72	54.321	Microcebus_murinus
ENSDARG00000018494	smn1	96	51.986	ENSMOCG00000017833	Smn1	94	51.625	Microtus_ochrogaster
ENSDARG00000018494	smn1	98	56.835	ENSMMOG00000005504	smn1	99	52.881	Mola_mola
ENSDARG00000018494	smn1	95	56.089	ENSMODG00000001436	-	92	54.745	Monodelphis_domestica
ENSDARG00000018494	smn1	100	62.976	ENSMALG00000008025	smn1	100	61.324	Monopterus_albus
ENSDARG00000018494	smn1	95	52.768	MGP_CAROLIEiJ_G0018836	Smn1	94	51.282	Mus_caroli
ENSDARG00000018494	smn1	95	52.768	ENSMUSG00000021645	Smn1	94	51.282	Mus_musculus
ENSDARG00000018494	smn1	95	51.673	MGP_PahariEiJ_G0015911	Smn1	94	52.190	Mus_pahari
ENSDARG00000018494	smn1	95	52.399	MGP_SPRETEiJ_G0019718	Smn1	94	51.282	Mus_spretus
ENSDARG00000018494	smn1	93	49.638	ENSMPUG00000014470	-	92	47.955	Mustela_putorius_furo
ENSDARG00000018494	smn1	96	50.534	ENSMLUG00000010603	-	90	50.178	Myotis_lucifugus
ENSDARG00000018494	smn1	96	50.171	ENSNGAG00000019833	Smn1	94	50.178	Nannospalax_galili
ENSDARG00000018494	smn1	100	61.888	ENSNBRG00000023000	smn1	100	63.415	Neolamprologus_brichardi
ENSDARG00000018494	smn1	96	53.285	ENSNLEG00000004454	-	93	52.788	Nomascus_leucogenys
ENSDARG00000018494	smn1	67	51.562	ENSMEUG00000011393	-	85	51.000	Notamacropus_eugenii
ENSDARG00000018494	smn1	88	52.273	ENSOPRG00000002015	-	100	51.908	Ochotona_princeps
ENSDARG00000018494	smn1	91	51.894	ENSODEG00000015976	-	95	46.690	Octodon_degus
ENSDARG00000018494	smn1	100	61.888	ENSONIG00000011799	smn1	100	63.415	Oreochromis_niloticus
ENSDARG00000018494	smn1	95	54.579	ENSOANG00000001626	-	95	53.237	Ornithorhynchus_anatinus
ENSDARG00000018494	smn1	96	51.408	ENSOCUG00000026649	-	94	46.599	Oryctolagus_cuniculus
ENSDARG00000018494	smn1	71	45.455	ENSOCUG00000025183	-	76	47.143	Oryctolagus_cuniculus
ENSDARG00000018494	smn1	96	51.264	ENSOCUG00000017097	-	93	48.432	Oryctolagus_cuniculus
ENSDARG00000018494	smn1	100	59.298	ENSORLG00000010552	smn1	100	62.238	Oryzias_latipes
ENSDARG00000018494	smn1	100	59.220	ENSORLG00020007936	smn1	100	56.643	Oryzias_latipes_hni
ENSDARG00000018494	smn1	100	59.298	ENSORLG00015022425	smn1	100	63.986	Oryzias_latipes_hsok
ENSDARG00000018494	smn1	100	58.596	ENSOMEG00000007824	smn1	100	63.194	Oryzias_melastigma
ENSDARG00000018494	smn1	92	47.368	ENSOGAG00000031414	-	92	45.848	Otolemur_garnettii
ENSDARG00000018494	smn1	95	49.306	ENSOARG00000005425	-	97	45.017	Ovis_aries
ENSDARG00000018494	smn1	96	53.285	ENSPPAG00000036640	-	93	52.574	Pan_paniscus
ENSDARG00000018494	smn1	96	52.364	ENSPPRG00000005575	-	94	51.601	Panthera_pardus
ENSDARG00000018494	smn1	96	52.364	ENSPTIG00000007745	-	95	51.418	Panthera_tigris_altaica
ENSDARG00000018494	smn1	96	50.859	ENSPTRG00000016955	-	93	52.206	Pan_troglodytes
ENSDARG00000018494	smn1	96	54.380	ENSPANG00000013601	-	93	53.521	Papio_anubis
ENSDARG00000018494	smn1	95	51.111	ENSPANG00000000253	-	92	50.357	Papio_anubis
ENSDARG00000018494	smn1	100	60.777	ENSPKIG00000011096	smn1	100	56.401	Paramormyrops_kingsleyae
ENSDARG00000018494	smn1	95	52.347	ENSPSIG00000014787	-	86	52.747	Pelodiscus_sinensis
ENSDARG00000018494	smn1	100	59.233	ENSPMGG00000012285	smn1	97	61.818	Periophthalmus_magnuspinnatus
ENSDARG00000018494	smn1	95	57.196	ENSPCIG00000025764	-	93	56.000	Phascolarctos_cinereus
ENSDARG00000018494	smn1	100	63.574	ENSPFOG00000007786	smn1	100	62.000	Poecilia_formosa
ENSDARG00000018494	smn1	100	63.918	ENSPLAG00000012071	smn1	100	62.333	Poecilia_latipinna
ENSDARG00000018494	smn1	100	63.574	ENSPMEG00000017085	smn1	100	62.000	Poecilia_mexicana
ENSDARG00000018494	smn1	100	63.448	ENSPREG00000005824	smn1	100	64.931	Poecilia_reticulata
ENSDARG00000018494	smn1	93	52.453	ENSPPYG00000015533	-	96	51.838	Pongo_abelii
ENSDARG00000018494	smn1	60	76.923	ENSPPYG00000019189	-	99	39.516	Pongo_abelii
ENSDARG00000018494	smn1	92	52.347	ENSPCAG00000004187	-	99	52.416	Procavia_capensis
ENSDARG00000018494	smn1	61	50.000	ENSPCOG00000022307	-	65	52.740	Propithecus_coquereli
ENSDARG00000018494	smn1	96	52.899	ENSPVAG00000005977	-	93	49.818	Pteropus_vampyrus
ENSDARG00000018494	smn1	100	61.888	ENSPNYG00000014148	smn1	100	63.415	Pundamilia_nyererei
ENSDARG00000018494	smn1	100	73.310	ENSPNAG00000014007	smn1	87	73.310	Pygocentrus_nattereri
ENSDARG00000018494	smn1	94	52.574	ENSRNOG00000018067	Smn1	92	52.381	Rattus_norvegicus
ENSDARG00000018494	smn1	96	54.745	ENSRBIG00000037052	-	93	53.873	Rhinopithecus_bieti
ENSDARG00000018494	smn1	92	49.621	ENSRBIG00000036775	-	89	48.855	Rhinopithecus_bieti
ENSDARG00000018494	smn1	96	54.745	ENSRROG00000039399	-	93	54.044	Rhinopithecus_roxellana
ENSDARG00000018494	smn1	96	48.897	ENSRROG00000031088	-	93	46.350	Rhinopithecus_roxellana
ENSDARG00000018494	smn1	96	53.986	ENSSBOG00000011665	-	93	52.899	Saimiri_boliviensis_boliviensis
ENSDARG00000018494	smn1	58	52.071	ENSSBOG00000020112	-	90	46.899	Saimiri_boliviensis_boliviensis
ENSDARG00000018494	smn1	95	56.827	ENSSHAG00000001499	-	97	52.206	Sarcophilus_harrisii
ENSDARG00000018494	smn1	100	64.311	ENSSFOG00015015507	smn1	100	63.475	Scleropages_formosus
ENSDARG00000018494	smn1	100	56.184	ENSSMAG00000007922	smn1	100	62.105	Scophthalmus_maximus
ENSDARG00000018494	smn1	100	59.862	ENSSDUG00000018533	smn1	100	65.505	Seriola_dumerili
ENSDARG00000018494	smn1	100	60.208	ENSSLDG00000021135	smn1	100	65.854	Seriola_lalandi_dorsalis
ENSDARG00000018494	smn1	99	56.690	ENSSPUG00000000373	-	98	56.446	Sphenodon_punctatus
ENSDARG00000018494	smn1	100	65.157	ENSSPAG00000004345	smn1	100	63.763	Stegastes_partitus
ENSDARG00000018494	smn1	96	41.912	ENSSSCG00000029127	-	72	69.444	Sus_scrofa
ENSDARG00000018494	smn1	96	49.653	ENSSSCG00000016970	-	94	51.246	Sus_scrofa
ENSDARG00000018494	smn1	92	53.791	ENSTGUG00000001548	-	96	52.399	Taeniopygia_guttata
ENSDARG00000018494	smn1	100	55.749	ENSTRUG00000000736	smn	100	56.491	Takifugu_rubripes
ENSDARG00000018494	smn1	100	55.944	ENSTNIG00000009892	smn1	100	58.741	Tetraodon_nigroviridis
ENSDARG00000018494	smn1	55	57.325	ENSTBEG00000002399	-	83	51.724	Tupaia_belangeri
ENSDARG00000018494	smn1	54	57.962	ENSTTRG00000005080	-	91	50.178	Tursiops_truncatus
ENSDARG00000018494	smn1	66	50.000	ENSUAMG00000024947	-	66	47.895	Ursus_americanus
ENSDARG00000018494	smn1	96	49.091	ENSUMAG00000007842	-	70	49.455	Ursus_maritimus
ENSDARG00000018494	smn1	92	48.077	ENSVPAG00000009887	-	94	46.970	Vicugna_pacos
ENSDARG00000018494	smn1	96	51.087	ENSVVUG00000006934	-	94	48.364	Vulpes_vulpes
ENSDARG00000018494	smn1	87	32.331	ENSXETG00000004912	-	80	59.322	Xenopus_tropicalis
ENSDARG00000018494	smn1	99	54.861	ENSXETG00000018189	smn2	97	54.983	Xenopus_tropicalis
ENSDARG00000018494	smn1	100	63.542	ENSXMAG00000001521	smn1	100	65.278	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	24218366.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007399	nervous system development	-	IEA	Process
GO:0007409	axonogenesis	17065443.18440926.22922411.24067532.24590288.25075304.27499521.27699224.29061699.	IMP	Process
GO:0007409	axonogenesis	29061699.	IPI	Process
GO:0007528	neuromuscular junction development	22496553.	IGI	Process
GO:0007528	neuromuscular junction development	19592581.22496553.	IMP	Process
GO:0008045	motor neuron axon guidance	24067532.24218366.	IMP	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0015030	Cajal body	-	ISS	Component
GO:0016358	dendrite development	23459934.25180019.	IMP	Process
GO:0030018	Z disc	-	IEA	Component
GO:0032797	SMN complex	-	ISS	Component
GO:0032991	protein-containing complex	29061699.	IPI	Component
GO:0032991	protein-containing complex	29061699.	ISO	Component
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISS	Component
GO:0042995	cell projection	-	IEA	Component
GO:0043005	neuron projection	-	ISS	Component
GO:0043204	perikaryon	-	ISS	Component
GO:0048675	axon extension	16204184.20946666.25088406.26134627.	IMP	Process
GO:0048841	regulation of axon extension involved in axon guidance	28132687.	IGI	Process
GO:0048841	regulation of axon extension involved in axon guidance	28132687.	IMP	Process
GO:0048936	peripheral nervous system neuron axonogenesis	23459934.	IMP	Process
GO:0061564	axon development	23459934.25180019.25878277.26464491.	IMP	Process
GO:0097504	Gemini of coiled bodies	-	ISS	Component
GO:1903862	positive regulation of oxidative phosphorylation	28426667.	IMP	Process
GO:1904396	regulation of neuromuscular junction development	28132687.	IMP	Process