EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000018574 (Gene tree)
Gene ID: 192318
Gene Symbol: sf3b4
Alias: chunp6902|fb36a04|wu:fb36a04
Full Name: splicing factor 3b%2C subunit 4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6512 bases
Position: chr19:7424347-7430858
Accession: ZDB-GENE-020419-22
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000022759	RRM_1	PF00076.22	4.7e-39	1	2
ENSDARP00000022759	RRM_1	PF00076.22	4.7e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000004622	-	1391	-	ENSDARP00000022759	400 (aa)	-	Q6NWB3

Gene Model

Click here to download ENSDARG00000018574's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000018574's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000018574	sf3b4	77	80.878	ENSG00000143368	SF3B4	98	96.791	Homo_sapiens
ENSDARG00000018574	sf3b4	60	98.333	ENSAPOG00000017647	sf3b4	60	98.333	Acanthochromis_polyacanthus
ENSDARG00000018574	sf3b4	77	79.310	ENSAMEG00000010073	SF3B4	57	96.250	Ailuropoda_melanoleuca
ENSDARG00000018574	sf3b4	58	97.403	ENSACIG00000018455	sf3b4	68	97.391	Amphilophus_citrinellus
ENSDARG00000018574	sf3b4	60	97.500	ENSAOCG00000019801	sf3b4	60	97.500	Amphiprion_ocellaris
ENSDARG00000018574	sf3b4	60	97.500	ENSAPEG00000010365	sf3b4	60	97.500	Amphiprion_percula
ENSDARG00000018574	sf3b4	60	98.333	ENSATEG00000012844	sf3b4	60	98.333	Anabas_testudineus
ENSDARG00000018574	sf3b4	54	100.000	ENSACAG00000010019	SF3B4	55	98.261	Anolis_carolinensis
ENSDARG00000018574	sf3b4	77	80.878	ENSANAG00000031025	SF3B4	57	96.250	Aotus_nancymaae
ENSDARG00000018574	sf3b4	67	94.776	ENSACLG00000014260	sf3b4	60	97.917	Astatotilapia_calliptera
ENSDARG00000018574	sf3b4	68	97.407	ENSAMXG00000008282	sf3b4	60	98.333	Astyanax_mexicanus
ENSDARG00000018574	sf3b4	77	79.310	ENSBTAG00000012495	SF3B4	57	96.250	Bos_taurus
ENSDARG00000018574	sf3b4	54	94.393	ENSBTAG00000012793	-	53	94.393	Bos_taurus
ENSDARG00000018574	sf3b4	64	72.441	WBGene00004723	sap-49	55	81.690	Caenorhabditis_elegans
ENSDARG00000018574	sf3b4	77	79.310	ENSCAFG00000011617	SF3B4	57	96.250	Canis_familiaris
ENSDARG00000018574	sf3b4	77	79.310	ENSCAFG00020019775	SF3B4	57	96.250	Canis_lupus_dingo
ENSDARG00000018574	sf3b4	77	79.310	ENSCHIG00000025663	-	57	96.250	Capra_hircus
ENSDARG00000018574	sf3b4	74	59.935	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSDARG00000018574	sf3b4	77	80.878	ENSTSYG00000009295	SF3B4	57	96.250	Carlito_syrichta
ENSDARG00000018574	sf3b4	77	79.624	ENSCPOG00000008267	SF3B4	57	96.250	Cavia_porcellus
ENSDARG00000018574	sf3b4	60	95.417	ENSCCAG00000021751	-	54	95.417	Cebus_capucinus
ENSDARG00000018574	sf3b4	77	80.878	ENSCATG00000033114	SF3B4	57	96.250	Cercocebus_atys
ENSDARG00000018574	sf3b4	77	79.624	ENSCLAG00000015851	SF3B4	57	96.250	Chinchilla_lanigera
ENSDARG00000018574	sf3b4	77	80.878	ENSCSAG00000018129	SF3B4	57	96.250	Chlorocebus_sabaeus
ENSDARG00000018574	sf3b4	54	100.000	ENSCPBG00000008041	SF3B4	55	98.261	Chrysemys_picta_bellii
ENSDARG00000018574	sf3b4	56	88.839	ENSCING00000002337	-	58	90.654	Ciona_intestinalis
ENSDARG00000018574	sf3b4	52	91.429	ENSCSAVG00000007809	-	89	89.881	Ciona_savignyi
ENSDARG00000018574	sf3b4	77	80.878	ENSCANG00000035579	SF3B4	57	96.250	Colobus_angolensis_palliatus
ENSDARG00000018574	sf3b4	60	96.250	ENSCGRG00001003590	Sf3b4	57	96.250	Cricetulus_griseus_chok1gshd
ENSDARG00000018574	sf3b4	60	96.250	ENSCGRG00000016914	Sf3b4	57	96.250	Cricetulus_griseus_crigri
ENSDARG00000018574	sf3b4	66	95.076	ENSCVAG00000005536	sf3b4	59	96.507	Cyprinodon_variegatus
ENSDARG00000018574	sf3b4	97	63.682	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSDARG00000018574	sf3b4	75	74.920	ENSDNOG00000048908	-	56	90.948	Dasypus_novemcinctus
ENSDARG00000018574	sf3b4	77	79.310	ENSDORG00000016366	Sf3b4	57	96.250	Dipodomys_ordii
ENSDARG00000018574	sf3b4	55	86.878	FBgn0015818	Spx	62	88.318	Drosophila_melanogaster
ENSDARG00000018574	sf3b4	57	87.719	ENSETEG00000008963	SF3B4	54	87.391	Echinops_telfairi
ENSDARG00000018574	sf3b4	77	79.310	ENSEASG00005001477	SF3B4	57	96.250	Equus_asinus_asinus
ENSDARG00000018574	sf3b4	77	79.310	ENSECAG00000024737	SF3B4	57	96.250	Equus_caballus
ENSDARG00000018574	sf3b4	88	91.761	ENSELUG00000012876	sf3b4	60	98.333	Esox_lucius
ENSDARG00000018574	sf3b4	77	79.310	ENSFCAG00000010106	SF3B4	57	96.250	Felis_catus
ENSDARG00000018574	sf3b4	77	79.624	ENSFDAG00000009286	SF3B4	57	96.250	Fukomys_damarensis
ENSDARG00000018574	sf3b4	81	77.477	ENSGMOG00000002519	sf3b4	67	97.391	Gadus_morhua
ENSDARG00000018574	sf3b4	54	100.000	ENSGALG00000013352	SF3B4	55	98.696	Gallus_gallus
ENSDARG00000018574	sf3b4	66	95.833	ENSGAFG00000010181	sf3b4	61	97.083	Gambusia_affinis
ENSDARG00000018574	sf3b4	57	99.119	ENSGACG00000003819	sf3b4	58	98.261	Gasterosteus_aculeatus
ENSDARG00000018574	sf3b4	77	71.290	ENSGGOG00000038845	-	55	88.318	Gorilla_gorilla
ENSDARG00000018574	sf3b4	77	80.878	ENSGGOG00000004761	SF3B4	57	96.250	Gorilla_gorilla
ENSDARG00000018574	sf3b4	67	94.776	ENSHBUG00000002028	sf3b4	60	97.917	Haplochromis_burtoni
ENSDARG00000018574	sf3b4	77	79.624	ENSHGLG00000012360	SF3B4	57	96.250	Heterocephalus_glaber_female
ENSDARG00000018574	sf3b4	60	96.250	ENSHGLG00100008533	SF3B4	57	96.250	Heterocephalus_glaber_male
ENSDARG00000018574	sf3b4	57	96.916	ENSHCOG00000003014	sf3b4	57	96.507	Hippocampus_comes
ENSDARG00000018574	sf3b4	69	97.826	ENSIPUG00000012242	Sf3b4	60	99.583	Ictalurus_punctatus
ENSDARG00000018574	sf3b4	77	79.310	ENSSTOG00000000684	-	57	96.250	Ictidomys_tridecemlineatus
ENSDARG00000018574	sf3b4	59	70.270	ENSJJAG00000022500	Sf3b4	57	69.718	Jaculus_jaculus
ENSDARG00000018574	sf3b4	67	96.629	ENSKMAG00000008154	sf3b4	62	98.354	Kryptolebias_marmoratus
ENSDARG00000018574	sf3b4	58	97.854	ENSLBEG00000026818	sf3b4	58	98.696	Labrus_bergylta
ENSDARG00000018574	sf3b4	60	95.000	ENSLACG00000004436	SF3B4	66	95.000	Latimeria_chalumnae
ENSDARG00000018574	sf3b4	57	99.127	ENSLOCG00000009048	sf3b4	55	98.696	Lepisosteus_oculatus
ENSDARG00000018574	sf3b4	77	79.876	ENSLAFG00000008531	SF3B4	56	96.250	Loxodonta_africana
ENSDARG00000018574	sf3b4	77	80.878	ENSMFAG00000042395	SF3B4	57	96.250	Macaca_fascicularis
ENSDARG00000018574	sf3b4	89	63.636	ENSMFAG00000039067	-	58	78.802	Macaca_fascicularis
ENSDARG00000018574	sf3b4	77	80.878	ENSMMUG00000007256	SF3B4	57	96.250	Macaca_mulatta
ENSDARG00000018574	sf3b4	77	80.878	ENSMNEG00000031839	SF3B4	57	96.250	Macaca_nemestrina
ENSDARG00000018574	sf3b4	89	63.085	ENSMNEG00000031526	-	58	78.341	Macaca_nemestrina
ENSDARG00000018574	sf3b4	77	80.878	ENSMLEG00000038667	SF3B4	57	96.250	Mandrillus_leucophaeus
ENSDARG00000018574	sf3b4	60	97.083	ENSMAMG00000014692	sf3b4	60	97.083	Mastacembelus_armatus
ENSDARG00000018574	sf3b4	67	94.776	ENSMZEG00005026741	sf3b4	60	97.917	Maylandia_zebra
ENSDARG00000018574	sf3b4	54	100.000	ENSMGAG00000000653	SF3B4	55	98.696	Meleagris_gallopavo
ENSDARG00000018574	sf3b4	60	96.250	ENSMAUG00000015266	Sf3b4	57	96.250	Mesocricetus_auratus
ENSDARG00000018574	sf3b4	77	79.310	ENSMICG00000044961	SF3B4	57	96.250	Microcebus_murinus
ENSDARG00000018574	sf3b4	92	75.131	ENSMOCG00000014155	-	57	93.939	Microtus_ochrogaster
ENSDARG00000018574	sf3b4	60	96.250	ENSMOCG00000013658	-	57	96.250	Microtus_ochrogaster
ENSDARG00000018574	sf3b4	58	98.696	ENSMMOG00000018032	sf3b4	59	98.696	Mola_mola
ENSDARG00000018574	sf3b4	77	80.878	ENSMODG00000018767	SF3B4	57	96.250	Monodelphis_domestica
ENSDARG00000018574	sf3b4	68	93.704	ENSMALG00000006174	sf3b4	60	97.119	Monopterus_albus
ENSDARG00000018574	sf3b4	60	96.250	MGP_CAROLIEiJ_G0025365	Sf3b4	57	96.250	Mus_caroli
ENSDARG00000018574	sf3b4	60	96.250	ENSMUSG00000068856	Sf3b4	57	96.250	Mus_musculus
ENSDARG00000018574	sf3b4	60	96.250	MGP_PahariEiJ_G0026809	Sf3b4	57	96.250	Mus_pahari
ENSDARG00000018574	sf3b4	60	96.250	MGP_SPRETEiJ_G0026309	Sf3b4	57	96.250	Mus_spretus
ENSDARG00000018574	sf3b4	77	79.310	ENSMPUG00000005563	SF3B4	57	96.250	Mustela_putorius_furo
ENSDARG00000018574	sf3b4	77	79.310	ENSMLUG00000010789	SF3B4	57	96.250	Myotis_lucifugus
ENSDARG00000018574	sf3b4	77	81.505	ENSNGAG00000016337	Sf3b4	57	96.250	Nannospalax_galili
ENSDARG00000018574	sf3b4	67	95.149	ENSNBRG00000013865	sf3b4	60	98.333	Neolamprologus_brichardi
ENSDARG00000018574	sf3b4	99	65.049	ENSNLEG00000000537	-	58	87.826	Nomascus_leucogenys
ENSDARG00000018574	sf3b4	57	93.421	ENSOPRG00000010808	SF3B4	54	93.043	Ochotona_princeps
ENSDARG00000018574	sf3b4	76	68.438	ENSODEG00000003597	-	59	80.083	Octodon_degus
ENSDARG00000018574	sf3b4	87	60.446	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSDARG00000018574	sf3b4	67	94.403	ENSONIG00000002730	sf3b4	61	97.531	Oreochromis_niloticus
ENSDARG00000018574	sf3b4	65	71.269	ENSOANG00000004768	-	50	81.944	Ornithorhynchus_anatinus
ENSDARG00000018574	sf3b4	77	79.310	ENSOCUG00000004614	SF3B4	57	96.250	Oryctolagus_cuniculus
ENSDARG00000018574	sf3b4	75	89.073	ENSORLG00000003062	sf3b4	59	98.696	Oryzias_latipes
ENSDARG00000018574	sf3b4	58	98.276	ENSORLG00020000687	sf3b4	58	98.696	Oryzias_latipes_hni
ENSDARG00000018574	sf3b4	58	98.276	ENSORLG00015010989	sf3b4	58	98.696	Oryzias_latipes_hsok
ENSDARG00000018574	sf3b4	58	97.845	ENSOMEG00000013694	sf3b4	58	98.696	Oryzias_melastigma
ENSDARG00000018574	sf3b4	77	79.310	ENSOGAG00000006265	SF3B4	57	96.250	Otolemur_garnettii
ENSDARG00000018574	sf3b4	77	79.310	ENSOARG00000020718	-	57	96.250	Ovis_aries
ENSDARG00000018574	sf3b4	73	70.724	ENSOARG00000007368	-	55	80.973	Ovis_aries
ENSDARG00000018574	sf3b4	77	80.878	ENSPPAG00000040904	SF3B4	57	96.250	Pan_paniscus
ENSDARG00000018574	sf3b4	78	75.776	ENSPPAG00000030024	-	59	86.250	Pan_paniscus
ENSDARG00000018574	sf3b4	77	79.310	ENSPPRG00000007384	SF3B4	57	96.250	Panthera_pardus
ENSDARG00000018574	sf3b4	77	79.310	ENSPTIG00000014530	SF3B4	57	96.250	Panthera_tigris_altaica
ENSDARG00000018574	sf3b4	78	76.433	ENSPTRG00000049727	-	60	86.667	Pan_troglodytes
ENSDARG00000018574	sf3b4	77	80.878	ENSPTRG00000001243	SF3B4	57	96.250	Pan_troglodytes
ENSDARG00000018574	sf3b4	77	80.878	ENSPANG00000005126	SF3B4	57	96.250	Papio_anubis
ENSDARG00000018574	sf3b4	61	97.531	ENSPKIG00000020669	sf3b4	64	97.531	Paramormyrops_kingsleyae
ENSDARG00000018574	sf3b4	66	78.030	ENSPSIG00000009565	SF3B4	68	98.387	Pelodiscus_sinensis
ENSDARG00000018574	sf3b4	60	96.250	ENSPEMG00000017568	Sf3b4	57	96.250	Peromyscus_maniculatus_bairdii
ENSDARG00000018574	sf3b4	53	95.305	ENSPMAG00000007842	-	50	95.327	Petromyzon_marinus
ENSDARG00000018574	sf3b4	77	80.878	ENSPCIG00000008765	SF3B4	57	96.250	Phascolarctos_cinereus
ENSDARG00000018574	sf3b4	67	95.880	ENSPFOG00000005754	sf3b4	62	97.531	Poecilia_formosa
ENSDARG00000018574	sf3b4	67	95.880	ENSPLAG00000001401	sf3b4	67	97.531	Poecilia_latipinna
ENSDARG00000018574	sf3b4	67	95.880	ENSPREG00000011076	sf3b4	60	97.531	Poecilia_reticulata
ENSDARG00000018574	sf3b4	52	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSDARG00000018574	sf3b4	77	79.310	ENSPCOG00000015399	SF3B4	57	96.250	Propithecus_coquereli
ENSDARG00000018574	sf3b4	77	79.310	ENSPVAG00000014171	SF3B4	57	96.250	Pteropus_vampyrus
ENSDARG00000018574	sf3b4	67	94.776	ENSPNYG00000012700	sf3b4	60	97.917	Pundamilia_nyererei
ENSDARG00000018574	sf3b4	69	96.739	ENSPNAG00000000686	sf3b4	61	98.333	Pygocentrus_nattereri
ENSDARG00000018574	sf3b4	60	96.250	ENSRNOG00000021181	Sf3b4	57	96.250	Rattus_norvegicus
ENSDARG00000018574	sf3b4	77	80.878	ENSRBIG00000043392	SF3B4	57	96.250	Rhinopithecus_bieti
ENSDARG00000018574	sf3b4	92	60.367	ENSRROG00000028213	-	56	73.874	Rhinopithecus_roxellana
ENSDARG00000018574	sf3b4	77	80.878	ENSRROG00000029366	SF3B4	57	96.250	Rhinopithecus_roxellana
ENSDARG00000018574	sf3b4	77	80.564	ENSSBOG00000012310	-	57	95.833	Saimiri_boliviensis_boliviensis
ENSDARG00000018574	sf3b4	77	77.429	ENSSHAG00000004043	SF3B4	56	91.667	Sarcophilus_harrisii
ENSDARG00000018574	sf3b4	61	96.708	ENSSFOG00015008864	sf3b4	60	96.708	Scleropages_formosus
ENSDARG00000018574	sf3b4	81	91.925	ENSSMAG00000006837	sf3b4	60	97.917	Scophthalmus_maximus
ENSDARG00000018574	sf3b4	66	96.212	ENSSDUG00000012064	sf3b4	60	97.500	Seriola_dumerili
ENSDARG00000018574	sf3b4	66	96.591	ENSSLDG00000014226	sf3b4	60	97.917	Seriola_lalandi_dorsalis
ENSDARG00000018574	sf3b4	62	94.715	ENSSPUG00000001028	SF3B4	58	98.261	Sphenodon_punctatus
ENSDARG00000018574	sf3b4	79	57.188	ENSSSCG00000039440	-	56	63.478	Sus_scrofa
ENSDARG00000018574	sf3b4	77	79.814	ENSSSCG00000006665	-	57	96.250	Sus_scrofa
ENSDARG00000018574	sf3b4	61	95.455	ENSTGUG00000004470	SF3B4	91	98.696	Taeniopygia_guttata
ENSDARG00000018574	sf3b4	80	88.088	ENSTRUG00000004516	sf3b4	58	97.391	Takifugu_rubripes
ENSDARG00000018574	sf3b4	58	98.261	ENSTNIG00000009156	sf3b4	59	98.261	Tetraodon_nigroviridis
ENSDARG00000018574	sf3b4	77	79.310	ENSTTRG00000005217	SF3B4	57	96.250	Tursiops_truncatus
ENSDARG00000018574	sf3b4	77	79.310	ENSUAMG00000022468	SF3B4	57	96.250	Ursus_americanus
ENSDARG00000018574	sf3b4	60	96.250	ENSUMAG00000003802	SF3B4	57	96.250	Ursus_maritimus
ENSDARG00000018574	sf3b4	74	78.502	ENSVPAG00000008152	SF3B4	55	96.053	Vicugna_pacos
ENSDARG00000018574	sf3b4	77	79.310	ENSVVUG00000007732	-	61	96.250	Vulpes_vulpes
ENSDARG00000018574	sf3b4	59	92.308	ENSXETG00000011038	sf3b4	54	100.000	Xenopus_tropicalis
ENSDARG00000018574	sf3b4	67	95.506	ENSXCOG00000019895	sf3b4	62	97.119	Xiphophorus_couchianus
ENSDARG00000018574	sf3b4	66	96.212	ENSXMAG00000003772	sf3b4	62	97.119	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005681	spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0048026	positive regulation of mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component