EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000018618 (Gene tree)
Gene ID
327069
Gene Symbol
cpsf6
Alias
wu:fa22f12|zgc:85819
Full Name
cleavage and polyadenylation specific factor 6
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
18236 bases
Position
chr4:2041067-2059302
Accession
ZDB-GENE-030131-5277
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000110285RRM_1PF00076.228.2e-0711
ENSDARP00000076726RRM_1PF00076.228.5e-0711
ENSDARP00000145832RRM_1PF00076.228.7e-0711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000138291-813-ENSDARP00000116293117 (aa)-Q1L8Q3
ENSDART00000082289-2205-ENSDARP00000076726558 (aa)-Q6NWC6
ENSDART00000150832-797--- (aa)--
ENSDART00000150844-900-ENSDARP00000125580127 (aa)-H0WFE8
ENSDART00000188177-6240XM_005164451ENSDARP00000145832571 (aa)XP_005164508A0A2R8RIN6
ENSDART00000129521-2160XM_005164453ENSDARP00000110285545 (aa)XP_005164510Q6NWC6
Gene Model
Click here to download ENSDARG00000018618's gene model file
Pathways
Pathway IDPathway NameSource
dre03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000018618's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000018618cpsf66989.091ENSG00000111605CPSF68878.723Homo_sapiens
ENSDARG00000018618cpsf66362.963ENSG00000149532CPSF710050.331Homo_sapiens
ENSDARG00000018618cpsf65280.212ENSAMEG00000011781CPSF65280.212Ailuropoda_melanoleuca
ENSDARG00000018618cpsf65739.726ENSAOCG00000012357CPSF75751.786Amphiprion_ocellaris
ENSDARG00000018618cpsf65739.726ENSAPEG00000015375CPSF75751.786Amphiprion_percula
ENSDARG00000018618cpsf65279.787ENSACAG00000004381CPSF65279.787Anolis_carolinensis
ENSDARG00000018618cpsf66446.023ENSANAG00000024635CPSF77052.841Aotus_nancymaae
ENSDARG00000018618cpsf69480.658ENSAMXG00000016745CPSF68693.452Astyanax_mexicanus
ENSDARG00000018618cpsf66551.795ENSBTAG00000015263CPSF77258.235Bos_taurus
ENSDARG00000018618cpsf65280.142ENSBTAG00000007323CPSF65180.142Bos_taurus
ENSDARG00000018618cpsf66850.265ENSCJAG00000019282CPSF78060.000Callithrix_jacchus
ENSDARG00000018618cpsf66589.091ENSCJAG00000001798CPSF65180.142Callithrix_jacchus
ENSDARG00000018618cpsf65660.563ENSCAFG00000016152CPSF77258.824Canis_familiaris
ENSDARG00000018618cpsf67579.618ENSCAFG00000000424CPSF68378.488Canis_familiaris
ENSDARG00000018618cpsf65280.142ENSCAFG00020016950CPSF65180.142Canis_lupus_dingo
ENSDARG00000018618cpsf65660.563ENSCAFG00020012753CPSF77258.824Canis_lupus_dingo
ENSDARG00000018618cpsf66551.795ENSCHIG00000014655CPSF77258.235Capra_hircus
ENSDARG00000018618cpsf65280.142ENSCHIG00000010792CPSF65180.142Capra_hircus
ENSDARG00000018618cpsf65660.563ENSTSYG00000010138-7258.824Carlito_syrichta
ENSDARG00000018618cpsf67989.091ENSTSYG00000008591CPSF66289.157Carlito_syrichta
ENSDARG00000018618cpsf65460.432ENSCAPG00000006384CPSF77058.235Cavia_aperea
ENSDARG00000018618cpsf65280.142ENSCPOG00000015201CPSF65180.142Cavia_porcellus
ENSDARG00000018618cpsf65760.432ENSCPOG00000009980CPSF77258.235Cavia_porcellus
ENSDARG00000018618cpsf66589.091ENSCCAG00000028149CPSF65180.142Cebus_capucinus
ENSDARG00000018618cpsf65659.859ENSCCAG00000032367CPSF77258.235Cebus_capucinus
ENSDARG00000018618cpsf66589.091ENSCATG00000039288CPSF69563.525Cercocebus_atys
ENSDARG00000018618cpsf66850.265ENSCATG00000042801CPSF77358.235Cercocebus_atys
ENSDARG00000018618cpsf65760.432ENSCLAG00000003174CPSF77257.647Chinchilla_lanigera
ENSDARG00000018618cpsf66850.265ENSCSAG00000006414CPSF77358.235Chlorocebus_sabaeus
ENSDARG00000018618cpsf65280.851ENSCPBG00000013322CPSF65180.851Chrysemys_picta_bellii
ENSDARG00000018618cpsf65280.142ENSCGRG00001018082Cpsf65180.142Cricetulus_griseus_chok1gshd
ENSDARG00000018618cpsf65661.268ENSCGRG00001020382Cpsf77258.824Cricetulus_griseus_chok1gshd
ENSDARG00000018618cpsf65076.173ENSCGRG00000016909Cpsf65076.173Cricetulus_griseus_crigri
ENSDARG00000018618cpsf69539.889ENSCGRG00000017954Cpsf77358.824Cricetulus_griseus_crigri
ENSDARG00000018618cpsf66037.989ENSCSEG00000001956CPSF76840.722Cynoglossus_semilaevis
ENSDARG00000018618cpsf67936.946ENSCVAG00000007392CPSF79339.474Cyprinodon_variegatus
ENSDARG00000018618cpsf67787.931ENSCVAG00000014857cpsf65280.743Cyprinodon_variegatus
ENSDARG00000018618cpsf65280.496ENSDNOG00000015292CPSF65180.496Dasypus_novemcinctus
ENSDARG00000018618cpsf65660.563ENSDNOG00000018517CPSF78060.667Dasypus_novemcinctus
ENSDARG00000018618cpsf65345.055FBgn0035872CG71856546.610Drosophila_melanogaster
ENSDARG00000018618cpsf66552.632ENSETEG00000003765CPSF77255.294Echinops_telfairi
ENSDARG00000018618cpsf66978.241ENSETEG00000002097CPSF69563.167Echinops_telfairi
ENSDARG00000018618cpsf65660.563ENSEASG00005008196CPSF77258.824Equus_asinus_asinus
ENSDARG00000018618cpsf65280.142ENSEASG00005008066CPSF65180.142Equus_asinus_asinus
ENSDARG00000018618cpsf66363.889ENSECAG00000018521CPSF78260.667Equus_caballus
ENSDARG00000018618cpsf65280.142ENSECAG00000015988CPSF65180.142Equus_caballus
ENSDARG00000018618cpsf65280.142ENSFCAG00000002855CPSF65180.142Felis_catus
ENSDARG00000018618cpsf67150.968ENSFCAG00000013677CPSF78260.667Felis_catus
ENSDARG00000018618cpsf69548.511ENSFALG00000011927CPSF77659.412Ficedula_albicollis
ENSDARG00000018618cpsf65175.357ENSFDAG00000002281CPSF65175.357Fukomys_damarensis
ENSDARG00000018618cpsf69539.889ENSFDAG00000003919CPSF77258.235Fukomys_damarensis
ENSDARG00000018618cpsf65378.344ENSFHEG00000019693cpsf65381.667Fundulus_heteroclitus
ENSDARG00000018618cpsf65494.215ENSGMOG00000012951cpsf65395.041Gadus_morhua
ENSDARG00000018618cpsf66350.568ENSGALG00000040962CPSF76360.234Gallus_gallus
ENSDARG00000018618cpsf65280.851ENSGAGG00000010228CPSF65180.851Gopherus_agassizii
ENSDARG00000018618cpsf66589.091ENSGGOG00000008211CPSF65180.142Gorilla_gorilla
ENSDARG00000018618cpsf66060.432ENSHGLG00000019090-7358.235Heterocephalus_glaber_female
ENSDARG00000018618cpsf65280.142ENSHGLG00000000792CPSF65180.142Heterocephalus_glaber_female
ENSDARG00000018618cpsf65275.089ENSHGLG00100013861CPSF65175.089Heterocephalus_glaber_male
ENSDARG00000018618cpsf66060.432ENSHGLG00100013933-7458.235Heterocephalus_glaber_male
ENSDARG00000018618cpsf65660.563ENSSTOG00000007708CPSF77258.824Ictidomys_tridecemlineatus
ENSDARG00000018618cpsf66850.794ENSJJAG00000019390Cpsf77358.824Jaculus_jaculus
ENSDARG00000018618cpsf65640.714ENSLBEG00000000947CPSF77737.306Labrus_bergylta
ENSDARG00000018618cpsf65278.369ENSLACG00000008625CPSF65179.433Latimeria_chalumnae
ENSDARG00000018618cpsf69332.252ENSLACG00000005542CPSF77043.671Latimeria_chalumnae
ENSDARG00000018618cpsf66790.964ENSLOCG00000016190cpsf66690.964Lepisosteus_oculatus
ENSDARG00000018618cpsf66780.447ENSLAFG00000030413CPSF68179.444Loxodonta_africana
ENSDARG00000018618cpsf65660.563ENSLAFG00000032084CPSF77258.824Loxodonta_africana
ENSDARG00000018618cpsf65659.859ENSMFAG00000001401CPSF77258.235Macaca_fascicularis
ENSDARG00000018618cpsf66589.091ENSMFAG00000045318CPSF65180.142Macaca_fascicularis
ENSDARG00000018618cpsf66850.265ENSMMUG00000015280CPSF77358.235Macaca_mulatta
ENSDARG00000018618cpsf66389.091ENSMMUG00000002921CPSF65180.142Macaca_mulatta
ENSDARG00000018618cpsf66850.265ENSMNEG00000029585CPSF77358.235Macaca_nemestrina
ENSDARG00000018618cpsf66589.091ENSMNEG00000036311CPSF65180.142Macaca_nemestrina
ENSDARG00000018618cpsf65659.859ENSMLEG00000031269CPSF77158.235Mandrillus_leucophaeus
ENSDARG00000018618cpsf69542.572ENSMGAG00000004876CPSF76360.843Meleagris_gallopavo
ENSDARG00000018618cpsf65175.986ENSMGAG00000010552CPSF65276.000Meleagris_gallopavo
ENSDARG00000018618cpsf65280.142ENSMAUG00000013240Cpsf65180.142Mesocricetus_auratus
ENSDARG00000018618cpsf65660.563ENSMAUG00000013020Cpsf77258.824Mesocricetus_auratus
ENSDARG00000018618cpsf66589.091ENSMICG00000007385-5180.142Microcebus_murinus
ENSDARG00000018618cpsf65660.563ENSMICG00000013788CPSF77258.824Microcebus_murinus
ENSDARG00000018618cpsf65280.142ENSMOCG00000013982Cpsf65180.142Microtus_ochrogaster
ENSDARG00000018618cpsf65660.563ENSMOCG00000000072Cpsf77258.824Microtus_ochrogaster
ENSDARG00000018618cpsf65279.787ENSMODG00000007123CPSF65179.787Monodelphis_domestica
ENSDARG00000018618cpsf67591.192ENSMALG00000014908cpsf67692.169Monopterus_albus
ENSDARG00000018618cpsf65660.563MGP_CAROLIEiJ_G0022690Cpsf77258.824Mus_caroli
ENSDARG00000018618cpsf65280.142MGP_CAROLIEiJ_G0015834Cpsf65180.142Mus_caroli
ENSDARG00000018618cpsf65660.563ENSMUSG00000034820Cpsf77258.824Mus_musculus
ENSDARG00000018618cpsf65280.142ENSMUSG00000055531Cpsf65180.142Mus_musculus
ENSDARG00000018618cpsf65660.563MGP_PahariEiJ_G0014184Cpsf77258.824Mus_pahari
ENSDARG00000018618cpsf68180.142MGP_PahariEiJ_G0031253Cpsf69562.100Mus_pahari
ENSDARG00000018618cpsf65280.142MGP_SPRETEiJ_G0016657Cpsf65180.142Mus_spretus
ENSDARG00000018618cpsf65660.563MGP_SPRETEiJ_G0023604Cpsf77258.824Mus_spretus
ENSDARG00000018618cpsf65459.859ENSMPUG00000014163CPSF76857.647Mustela_putorius_furo
ENSDARG00000018618cpsf66986.331ENSMLUG00000028728-8782.639Myotis_lucifugus
ENSDARG00000018618cpsf65175.986ENSMLUG00000004172-5275.986Myotis_lucifugus
ENSDARG00000018618cpsf66850.794ENSMLUG00000013278CPSF77358.824Myotis_lucifugus
ENSDARG00000018618cpsf69768.326ENSMLUG00000023960-7966.327Myotis_lucifugus
ENSDARG00000018618cpsf65280.142ENSNGAG00000015901Cpsf65180.142Nannospalax_galili
ENSDARG00000018618cpsf65660.563ENSNGAG00000005031Cpsf77258.824Nannospalax_galili
ENSDARG00000018618cpsf66589.091ENSNLEG00000003798CPSF65180.142Nomascus_leucogenys
ENSDARG00000018618cpsf65659.859ENSNLEG00000002529CPSF76658.235Nomascus_leucogenys
ENSDARG00000018618cpsf65264.890ENSMEUG00000015041CPSF69567.972Notamacropus_eugenii
ENSDARG00000018618cpsf66553.968ENSMEUG00000002261CPSF77258.824Notamacropus_eugenii
ENSDARG00000018618cpsf66548.889ENSODEG00000002610CPSF77257.803Octodon_degus
ENSDARG00000018618cpsf65279.433ENSODEG00000018399-5179.433Octodon_degus
ENSDARG00000018618cpsf67962.914ENSODEG00000007109-7362.264Octodon_degus
ENSDARG00000018618cpsf69168.369ENSOANG00000005944CPSF65073.864Ornithorhynchus_anatinus
ENSDARG00000018618cpsf69940.780ENSOCUG00000024726CPSF77258.235Oryctolagus_cuniculus
ENSDARG00000018618cpsf67837.387ENSORLG00000006495CPSF76439.881Oryzias_latipes
ENSDARG00000018618cpsf66531.950ENSORLG00020012657CPSF76439.881Oryzias_latipes_hni
ENSDARG00000018618cpsf68034.156ENSORLG00015011091CPSF76340.964Oryzias_latipes_hsok
ENSDARG00000018618cpsf65284.429ENSOMEG00000009425cpsf65277.333Oryzias_melastigma
ENSDARG00000018618cpsf66040.000ENSOMEG00000000539CPSF76439.306Oryzias_melastigma
ENSDARG00000018618cpsf65660.563ENSOGAG00000027958CPSF76758.824Otolemur_garnettii
ENSDARG00000018618cpsf69540.073ENSOARG00000012937CPSF76858.235Ovis_aries
ENSDARG00000018618cpsf65659.859ENSPPAG00000028232CPSF77058.235Pan_paniscus
ENSDARG00000018618cpsf65280.142ENSPPRG00000021620CPSF65180.142Panthera_pardus
ENSDARG00000018618cpsf69538.993ENSPPRG00000008538CPSF77258.824Panthera_pardus
ENSDARG00000018618cpsf65660.563ENSPTIG00000021699CPSF77258.824Panthera_tigris_altaica
ENSDARG00000018618cpsf66589.091ENSPTRG00000005205CPSF65180.142Pan_troglodytes
ENSDARG00000018618cpsf65659.859ENSPTRG00000003742CPSF77258.235Pan_troglodytes
ENSDARG00000018618cpsf68676.610ENSPANG00000011641CPSF67079.904Papio_anubis
ENSDARG00000018618cpsf65659.859ENSPANG00000006037CPSF77158.235Papio_anubis
ENSDARG00000018618cpsf65284.859ENSPKIG00000003081-5283.803Paramormyrops_kingsleyae
ENSDARG00000018618cpsf65282.168ENSPKIG00000022613CPSF65283.916Paramormyrops_kingsleyae
ENSDARG00000018618cpsf66147.126ENSPKIG00000018054CPSF77645.161Paramormyrops_kingsleyae
ENSDARG00000018618cpsf66850.794ENSPEMG00000012648Cpsf77358.824Peromyscus_maniculatus_bairdii
ENSDARG00000018618cpsf65279.787ENSPCIG00000019063CPSF65179.787Phascolarctos_cinereus
ENSDARG00000018618cpsf66551.020ENSPCIG00000002551CPSF77464.394Phascolarctos_cinereus
ENSDARG00000018618cpsf67791.954ENSPLAG00000005715cpsf65283.446Poecilia_latipinna
ENSDARG00000018618cpsf65272.840ENSPMEG00000001353cpsf65283.446Poecilia_mexicana
ENSDARG00000018618cpsf65272.840ENSPREG00000004417cpsf65283.446Poecilia_reticulata
ENSDARG00000018618cpsf65659.859ENSPPYG00000003188CPSF77258.235Pongo_abelii
ENSDARG00000018618cpsf65280.142ENSPPYG00000004756CPSF65180.142Pongo_abelii
ENSDARG00000018618cpsf66589.091ENSPCOG00000024384CPSF65180.142Propithecus_coquereli
ENSDARG00000018618cpsf65660.563ENSPCOG00000011976CPSF77258.824Propithecus_coquereli
ENSDARG00000018618cpsf65660.563ENSPVAG00000010675CPSF77258.824Pteropus_vampyrus
ENSDARG00000018618cpsf65287.368ENSPNAG00000024098CPSF65285.614Pygocentrus_nattereri
ENSDARG00000018618cpsf65846.286ENSPNAG00000015073CPSF76949.080Pygocentrus_nattereri
ENSDARG00000018618cpsf66850.794ENSRNOG00000020668Cpsf77358.824Rattus_norvegicus
ENSDARG00000018618cpsf65280.496ENSRNOG00000005927Cpsf65180.496Rattus_norvegicus
ENSDARG00000018618cpsf66589.091ENSRBIG00000042827CPSF65180.142Rhinopithecus_bieti
ENSDARG00000018618cpsf67150.323ENSRBIG00000031429CPSF78260.000Rhinopithecus_bieti
ENSDARG00000018618cpsf65659.859ENSRROG00000045009CPSF77258.235Rhinopithecus_roxellana
ENSDARG00000018618cpsf66589.091ENSRROG00000042758CPSF65180.142Rhinopithecus_roxellana
ENSDARG00000018618cpsf65659.859ENSSBOG00000018431CPSF77258.235Saimiri_boliviensis_boliviensis
ENSDARG00000018618cpsf66251.795ENSSHAG00000011964CPSF76958.824Sarcophilus_harrisii
ENSDARG00000018618cpsf65280.420ENSSFOG00015015803CPSF65179.577Scleropages_formosus
ENSDARG00000018618cpsf67840.000ENSSFOG00015010288cpsf77342.222Scleropages_formosus
ENSDARG00000018618cpsf67289.091ENSSARG00000006743CPSF66589.157Sorex_araneus
ENSDARG00000018618cpsf66551.053ENSSPUG00000019344CPSF77359.064Sphenodon_punctatus
ENSDARG00000018618cpsf65660.563ENSSSCG00000013083CPSF78060.667Sus_scrofa
ENSDARG00000018618cpsf65280.142ENSSSCG00000038031CPSF65180.142Sus_scrofa
ENSDARG00000018618cpsf66352.778ENSTGUG00000006513CPSF77157.059Taeniopygia_guttata
ENSDARG00000018618cpsf65359.859ENSTTRG00000011085CPSF77058.824Tursiops_truncatus
ENSDARG00000018618cpsf65660.563ENSUAMG00000017809CPSF77258.824Ursus_americanus
ENSDARG00000018618cpsf66850.794ENSUMAG00000011825CPSF77358.824Ursus_maritimus
ENSDARG00000018618cpsf65660.563ENSVVUG00000004939CPSF78060.667Vulpes_vulpes
ENSDARG00000018618cpsf69740.909ENSXETG00000006715cpsf75445.763Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0003729mRNA binding-ISSFunction
GO:0005634nucleus-IEAComponent
GO:0005726perichromatin fibrils-ISSComponent
GO:0005737cytoplasm-IEAComponent
GO:0005737cytoplasm-ISSComponent
GO:0005849mRNA cleavage factor complex-IEAComponent
GO:0005849mRNA cleavage factor complex-ISSComponent
GO:0006397mRNA processing-IEAProcess
GO:0016607nuclear speck-ISSComponent
GO:0035061interchromatin granule-ISSComponent
GO:0042382paraspeckles-ISSComponent
GO:0046833positive regulation of RNA export from nucleus-ISSProcess
GO:0051290protein heterotetramerization-ISSProcess
GO:0110104mRNA alternative polyadenylation-ISSProcess
GO:1990120messenger ribonucleoprotein complex assembly-ISSProcess

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