EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000018623 (Gene tree)
Gene ID: 394119
Gene Symbol: rad54l
Alias: zgc:56289
Full Name: RAD54 like
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 17701 bases
Position: chr6:3473657-3491357
Accession: ZDB-GENE-040426-968
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000007237	ResIII	PF04851.15	2.2e-08	1	1
ENSDARP00000007237	DEAD	PF00270.29	4.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000011785	-	2589	-	ENSDARP00000007237	738 (aa)	-	F1Q8K0

Gene Model

Click here to download ENSDARG00000018623's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000018623's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000018623	rad54l	81	44.590	ENSDARG00000092134	rad54b	88	44.887
ENSDARG00000018623	rad54l	63	38.462	ENSDARG00000057738	hells	51	38.144

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000018623	rad54l	99	79.625	ENSG00000085999	RAD54L	100	88.000	Homo_sapiens
ENSDARG00000018623	rad54l	99	83.604	ENSAPOG00000011643	rad54l	99	83.604	Acanthochromis_polyacanthus
ENSDARG00000018623	rad54l	99	78.926	ENSAMEG00000013902	RAD54L	99	78.926	Ailuropoda_melanoleuca
ENSDARG00000018623	rad54l	99	83.762	ENSACIG00000001939	rad54l	99	83.762	Amphilophus_citrinellus
ENSDARG00000018623	rad54l	99	86.604	ENSAOCG00000017576	rad54l	100	86.604	Amphiprion_ocellaris
ENSDARG00000018623	rad54l	95	88.034	ENSAPEG00000020658	rad54l	97	88.034	Amphiprion_percula
ENSDARG00000018623	rad54l	95	88.017	ENSATEG00000006767	rad54l	99	88.017	Anabas_testudineus
ENSDARG00000018623	rad54l	95	83.262	ENSAPLG00000006389	RAD54L	99	83.262	Anas_platyrhynchos
ENSDARG00000018623	rad54l	99	81.696	ENSACAG00000002312	RAD54L	99	81.696	Anolis_carolinensis
ENSDARG00000018623	rad54l	99	79.357	ENSANAG00000035439	RAD54L	99	79.357	Aotus_nancymaae
ENSDARG00000018623	rad54l	100	82.815	ENSACLG00000018711	rad54l	100	82.815	Astatotilapia_calliptera
ENSDARG00000018623	rad54l	100	89.892	ENSAMXG00000012777	rad54l	100	89.892	Astyanax_mexicanus
ENSDARG00000018623	rad54l	99	79.920	ENSBTAG00000019901	RAD54L	99	79.920	Bos_taurus
ENSDARG00000018623	rad54l	93	57.864	WBGene00004298	rad-54	84	57.864	Caenorhabditis_elegans
ENSDARG00000018623	rad54l	99	77.139	ENSCJAG00000021080	RAD54L	95	77.139	Callithrix_jacchus
ENSDARG00000018623	rad54l	99	79.625	ENSCAFG00000004272	RAD54L	99	79.625	Canis_familiaris
ENSDARG00000018623	rad54l	99	79.597	ENSCAFG00020015066	RAD54L	99	79.597	Canis_lupus_dingo
ENSDARG00000018623	rad54l	99	79.759	ENSCHIG00000020118	RAD54L	99	79.759	Capra_hircus
ENSDARG00000018623	rad54l	99	78.877	ENSTSYG00000002032	RAD54L	99	78.877	Carlito_syrichta
ENSDARG00000018623	rad54l	99	79.893	ENSCPOG00000006768	RAD54L	99	79.893	Cavia_porcellus
ENSDARG00000018623	rad54l	99	79.625	ENSCCAG00000025783	RAD54L	99	79.625	Cebus_capucinus
ENSDARG00000018623	rad54l	99	79.491	ENSCATG00000030589	RAD54L	99	79.491	Cercocebus_atys
ENSDARG00000018623	rad54l	99	80.295	ENSCLAG00000004645	RAD54L	99	80.295	Chinchilla_lanigera
ENSDARG00000018623	rad54l	99	79.357	ENSCSAG00000001229	RAD54L	99	79.357	Chlorocebus_sabaeus
ENSDARG00000018623	rad54l	99	80.888	ENSCPBG00000005675	RAD54L	99	80.888	Chrysemys_picta_bellii
ENSDARG00000018623	rad54l	100	64.554	ENSCING00000024456	-	100	64.424	Ciona_intestinalis
ENSDARG00000018623	rad54l	100	64.575	ENSCSAVG00000010859	-	100	64.706	Ciona_savignyi
ENSDARG00000018623	rad54l	99	79.357	ENSCANG00000034891	RAD54L	99	79.357	Colobus_angolensis_palliatus
ENSDARG00000018623	rad54l	99	79.139	ENSCGRG00001014807	Rad54l	99	79.139	Cricetulus_griseus_chok1gshd
ENSDARG00000018623	rad54l	99	79.139	ENSCGRG00000016038	Rad54l	99	79.139	Cricetulus_griseus_crigri
ENSDARG00000018623	rad54l	99	84.574	ENSCSEG00000001983	rad54l	99	84.574	Cynoglossus_semilaevis
ENSDARG00000018623	rad54l	77	86.694	ENSCVAG00000019561	rad54l	100	86.694	Cyprinodon_variegatus
ENSDARG00000018623	rad54l	99	78.820	ENSDNOG00000003395	RAD54L	99	78.820	Dasypus_novemcinctus
ENSDARG00000018623	rad54l	99	72.222	ENSDORG00000002632	Rad54l	99	72.354	Dipodomys_ordii
ENSDARG00000018623	rad54l	99	55.040	FBgn0002989	okr	95	55.040	Drosophila_melanogaster
ENSDARG00000018623	rad54l	78	77.729	ENSETEG00000000550	RAD54L	78	77.729	Echinops_telfairi
ENSDARG00000018623	rad54l	99	79.380	ENSEASG00005004511	RAD54L	96	82.836	Equus_asinus_asinus
ENSDARG00000018623	rad54l	99	79.491	ENSECAG00000008760	RAD54L	99	79.625	Equus_caballus
ENSDARG00000018623	rad54l	99	76.337	ENSEEUG00000008113	RAD54L	99	76.337	Erinaceus_europaeus
ENSDARG00000018623	rad54l	100	88.086	ENSELUG00000002295	rad54l	100	88.086	Esox_lucius
ENSDARG00000018623	rad54l	99	78.820	ENSFCAG00000003444	RAD54L	99	78.820	Felis_catus
ENSDARG00000018623	rad54l	99	81.157	ENSFALG00000009480	RAD54L	99	81.292	Ficedula_albicollis
ENSDARG00000018623	rad54l	99	79.491	ENSFDAG00000007806	RAD54L	99	79.491	Fukomys_damarensis
ENSDARG00000018623	rad54l	66	77.959	ENSFHEG00000009824	rad54l	83	77.959	Fundulus_heteroclitus
ENSDARG00000018623	rad54l	99	85.075	ENSGMOG00000014568	rad54l	100	85.075	Gadus_morhua
ENSDARG00000018623	rad54l	99	81.132	ENSGALG00000010356	RAD54L	92	81.132	Gallus_gallus
ENSDARG00000018623	rad54l	91	82.467	ENSGAFG00000011110	rad54l	100	82.467	Gambusia_affinis
ENSDARG00000018623	rad54l	100	85.695	ENSGACG00000003111	rad54l	98	85.695	Gasterosteus_aculeatus
ENSDARG00000018623	rad54l	99	80.728	ENSGAGG00000014089	RAD54L	96	80.728	Gopherus_agassizii
ENSDARG00000018623	rad54l	99	79.357	ENSGGOG00000010602	RAD54L	99	79.357	Gorilla_gorilla
ENSDARG00000018623	rad54l	100	83.243	ENSHBUG00000007793	rad54l	100	83.243	Haplochromis_burtoni
ENSDARG00000018623	rad54l	99	79.759	ENSHGLG00000000753	RAD54L	99	79.759	Heterocephalus_glaber_female
ENSDARG00000018623	rad54l	99	79.491	ENSHGLG00100016987	RAD54L	99	79.491	Heterocephalus_glaber_male
ENSDARG00000018623	rad54l	100	87.349	ENSIPUG00000015999	rad54l	100	89.670	Ictalurus_punctatus
ENSDARG00000018623	rad54l	99	79.223	ENSSTOG00000029125	RAD54L	99	79.223	Ictidomys_tridecemlineatus
ENSDARG00000018623	rad54l	99	66.354	ENSJJAG00000000235	-	99	66.220	Jaculus_jaculus
ENSDARG00000018623	rad54l	100	83.897	ENSKMAG00000009944	rad54l	100	83.897	Kryptolebias_marmoratus
ENSDARG00000018623	rad54l	99	86.431	ENSLBEG00000014617	rad54l	97	89.137	Labrus_bergylta
ENSDARG00000018623	rad54l	100	86.406	ENSLOCG00000004144	rad54l	100	86.924	Lepisosteus_oculatus
ENSDARG00000018623	rad54l	99	79.195	ENSLAFG00000007583	RAD54L	99	79.597	Loxodonta_africana
ENSDARG00000018623	rad54l	99	79.625	ENSMFAG00000031241	RAD54L	99	79.625	Macaca_fascicularis
ENSDARG00000018623	rad54l	99	79.625	ENSMMUG00000011568	RAD54L	99	79.625	Macaca_mulatta
ENSDARG00000018623	rad54l	99	79.357	ENSMNEG00000038562	RAD54L	99	79.357	Macaca_nemestrina
ENSDARG00000018623	rad54l	99	79.491	ENSMLEG00000038145	RAD54L	99	79.491	Mandrillus_leucophaeus
ENSDARG00000018623	rad54l	99	84.688	ENSMAMG00000022180	rad54l	99	87.574	Mastacembelus_armatus
ENSDARG00000018623	rad54l	100	82.679	ENSMZEG00005018081	rad54l	100	82.679	Maylandia_zebra
ENSDARG00000018623	rad54l	99	80.837	ENSMGAG00000010634	RAD54L	99	80.837	Meleagris_gallopavo
ENSDARG00000018623	rad54l	99	79.812	ENSMAUG00000020076	Rad54l	99	79.812	Mesocricetus_auratus
ENSDARG00000018623	rad54l	99	79.491	ENSMICG00000003266	RAD54L	99	79.491	Microcebus_murinus
ENSDARG00000018623	rad54l	99	80.081	ENSMOCG00000001778	Rad54l	99	80.081	Microtus_ochrogaster
ENSDARG00000018623	rad54l	99	83.558	ENSMALG00000021148	rad54l	99	83.558	Monopterus_albus
ENSDARG00000018623	rad54l	99	75.098	MGP_CAROLIEiJ_G0026325	Rad54l	99	75.098	Mus_caroli
ENSDARG00000018623	rad54l	99	78.820	ENSMUSG00000028702	Rad54l	99	78.820	Mus_musculus
ENSDARG00000018623	rad54l	99	78.926	MGP_PahariEiJ_G0028657	Rad54l	99	78.926	Mus_pahari
ENSDARG00000018623	rad54l	99	78.954	MGP_SPRETEiJ_G0027297	Rad54l	99	78.954	Mus_spretus
ENSDARG00000018623	rad54l	99	79.223	ENSMPUG00000012883	RAD54L	99	79.223	Mustela_putorius_furo
ENSDARG00000018623	rad54l	99	79.597	ENSMLUG00000003763	RAD54L	99	79.597	Myotis_lucifugus
ENSDARG00000018623	rad54l	99	78.983	ENSNGAG00000024213	Rad54l	99	78.983	Nannospalax_galili
ENSDARG00000018623	rad54l	99	79.223	ENSNLEG00000016548	RAD54L	99	79.223	Nomascus_leucogenys
ENSDARG00000018623	rad54l	91	79.674	ENSMEUG00000006793	RAD54L	100	79.674	Notamacropus_eugenii
ENSDARG00000018623	rad54l	90	82.230	ENSOPRG00000016016	RAD54L	90	82.230	Ochotona_princeps
ENSDARG00000018623	rad54l	99	79.893	ENSODEG00000008519	RAD54L	99	79.893	Octodon_degus
ENSDARG00000018623	rad54l	100	82.815	ENSONIG00000007659	rad54l	100	82.815	Oreochromis_niloticus
ENSDARG00000018623	rad54l	99	79.357	ENSOCUG00000005229	RAD54L	99	79.357	Oryctolagus_cuniculus
ENSDARG00000018623	rad54l	100	82.520	ENSORLG00000002958	rad54l	100	82.927	Oryzias_latipes
ENSDARG00000018623	rad54l	99	83.175	ENSORLG00020006554	rad54l	99	85.609	Oryzias_latipes_hni
ENSDARG00000018623	rad54l	100	81.978	ENSORLG00015002907	rad54l	100	83.062	Oryzias_latipes_hsok
ENSDARG00000018623	rad54l	99	83.582	ENSOMEG00000007770	rad54l	99	83.582	Oryzias_melastigma
ENSDARG00000018623	rad54l	99	79.947	ENSOARG00000002264	RAD54L	99	79.947	Ovis_aries
ENSDARG00000018623	rad54l	99	79.357	ENSPPAG00000031222	RAD54L	99	79.357	Pan_paniscus
ENSDARG00000018623	rad54l	99	78.820	ENSPPRG00000010317	RAD54L	99	78.820	Panthera_pardus
ENSDARG00000018623	rad54l	99	78.820	ENSPTIG00000012200	RAD54L	99	78.820	Panthera_tigris_altaica
ENSDARG00000018623	rad54l	99	79.357	ENSPTRG00000000689	RAD54L	99	79.357	Pan_troglodytes
ENSDARG00000018623	rad54l	99	79.491	ENSPANG00000016295	RAD54L	99	79.491	Papio_anubis
ENSDARG00000018623	rad54l	99	78.862	ENSPKIG00000016172	rad54l	99	78.862	Paramormyrops_kingsleyae
ENSDARG00000018623	rad54l	99	81.199	ENSPSIG00000003258	RAD54L	99	81.199	Pelodiscus_sinensis
ENSDARG00000018623	rad54l	99	79.675	ENSPMGG00000016335	rad54l	99	79.675	Periophthalmus_magnuspinnatus
ENSDARG00000018623	rad54l	99	79.273	ENSPEMG00000011422	Rad54l	99	79.273	Peromyscus_maniculatus_bairdii
ENSDARG00000018623	rad54l	99	71.198	ENSPMAG00000007719	rad54l	99	71.198	Petromyzon_marinus
ENSDARG00000018623	rad54l	100	80.242	ENSPCIG00000029032	RAD54L	100	80.242	Phascolarctos_cinereus
ENSDARG00000018623	rad54l	86	85.197	ENSPFOG00000013732	rad54l	99	85.197	Poecilia_formosa
ENSDARG00000018623	rad54l	82	83.442	ENSPLAG00000023416	rad54l	99	83.442	Poecilia_latipinna
ENSDARG00000018623	rad54l	91	82.615	ENSPMEG00000008299	rad54l	100	82.615	Poecilia_mexicana
ENSDARG00000018623	rad54l	100	81.597	ENSPREG00000019955	rad54l	100	81.597	Poecilia_reticulata
ENSDARG00000018623	rad54l	99	67.604	ENSPPYG00000001398	RAD54L	99	67.604	Pongo_abelii
ENSDARG00000018623	rad54l	79	82.039	ENSPCAG00000005323	RAD54L	80	82.039	Procavia_capensis
ENSDARG00000018623	rad54l	99	79.357	ENSPCOG00000015423	RAD54L	99	79.357	Propithecus_coquereli
ENSDARG00000018623	rad54l	99	79.223	ENSPNYG00000002942	rad54l	99	79.223	Pundamilia_nyererei
ENSDARG00000018623	rad54l	100	89.474	ENSPNAG00000012483	rad54l	100	89.474	Pygocentrus_nattereri
ENSDARG00000018623	rad54l	99	78.954	ENSRNOG00000013148	Rad54l	99	78.954	Rattus_norvegicus
ENSDARG00000018623	rad54l	99	79.491	ENSRBIG00000043495	RAD54L	99	79.491	Rhinopithecus_bieti
ENSDARG00000018623	rad54l	99	79.491	ENSRROG00000020844	RAD54L	99	79.491	Rhinopithecus_roxellana
ENSDARG00000018623	rad54l	77	50.900	YGL163C	RAD54	68	51.461	Saccharomyces_cerevisiae
ENSDARG00000018623	rad54l	99	79.625	ENSSBOG00000024672	RAD54L	99	79.625	Saimiri_boliviensis_boliviensis
ENSDARG00000018623	rad54l	100	80.240	ENSSHAG00000000110	RAD54L	100	80.240	Sarcophilus_harrisii
ENSDARG00000018623	rad54l	100	86.622	ENSSDUG00000019147	rad54l	100	86.622	Seriola_dumerili
ENSDARG00000018623	rad54l	100	86.622	ENSSLDG00000012330	rad54l	100	86.622	Seriola_lalandi_dorsalis
ENSDARG00000018623	rad54l	84	78.170	ENSSARG00000006689	RAD54L	100	78.170	Sorex_araneus
ENSDARG00000018623	rad54l	99	84.980	ENSSPAG00000011016	rad54l	100	84.980	Stegastes_partitus
ENSDARG00000018623	rad54l	99	79.625	ENSSSCG00000003905	RAD54L	99	79.625	Sus_scrofa
ENSDARG00000018623	rad54l	99	81.292	ENSTGUG00000008233	RAD54L	99	81.292	Taeniopygia_guttata
ENSDARG00000018623	rad54l	99	81.572	ENSTRUG00000008410	rad54l	99	81.572	Takifugu_rubripes
ENSDARG00000018623	rad54l	99	78.302	ENSTNIG00000004716	rad54l	99	78.890	Tetraodon_nigroviridis
ENSDARG00000018623	rad54l	99	74.665	ENSTTRG00000006315	RAD54L	99	74.665	Tursiops_truncatus
ENSDARG00000018623	rad54l	99	78.677	ENSUAMG00000011824	RAD54L	99	78.677	Ursus_americanus
ENSDARG00000018623	rad54l	99	77.598	ENSUMAG00000023603	RAD54L	99	77.598	Ursus_maritimus
ENSDARG00000018623	rad54l	99	79.491	ENSVVUG00000007201	RAD54L	99	79.491	Vulpes_vulpes
ENSDARG00000018623	rad54l	95	76.945	ENSXETG00000004369	rad54l	99	76.945	Xenopus_tropicalis
ENSDARG00000018623	rad54l	55	80.049	ENSXCOG00000016028	rad54l	81	84.239	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	15806108.	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0008094	DNA-dependent ATPase activity	15806108.	IDA	Function
GO:0046872	metal ion binding	-	IEA	Function