EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000018814 (Gene tree)
Gene ID: 572992
Gene Symbol: esrp2
Alias: cb404|rbm35b|sb:cb404|zgc:77254
Full Name: epithelial splicing regulatory protein 2
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 27008 bases
Position: chr7:34794829-34821836
Accession: ZDB-GENE-030131-9824
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000015568	RRM_1	PF00076.22	4.4e-18	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000009698	-	3364	XM_005168986	ENSDARP00000015568	736 (aa)	XP_005169043	G1K2G8
ENSDART00000173803	-	742	-	ENSDARP00000142716	28 (aa)	-	A0A1D5NSA6
ENSDART00000075089	-	3435	XM_005168987	ENSDARP00000069574	711 (aa)	XP_005169044	G1K2P5
ENSDART00000173456	-	804	-	ENSDARP00000142791	213 (aa)	-	A0A1D5NSH6

Gene Model

Click here to download ENSDARG00000018814's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000018814's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000018814	esrp2	55	33.824	ENSDARG00000053021	grsf1	69	33.824
ENSDARG00000018814	esrp2	68	31.548	ENSDARG00000040881	hnrnph1	89	30.027
ENSDARG00000018814	esrp2	98	57.027	ENSDARG00000011245	esrp1	98	56.815

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000018814	esrp2	99	80.780	ENSAOCG00000017713	esrp2	99	82.258	Amphiprion_ocellaris
ENSDARG00000018814	esrp2	99	79.919	ENSCSEG00000011686	esrp2	99	80.863	Cynoglossus_semilaevis
ENSDARG00000018814	esrp2	100	79.357	ENSCVAG00000004170	esrp2	100	80.563	Cyprinodon_variegatus
ENSDARG00000018814	esrp2	99	80.242	ENSFHEG00000012728	esrp2	99	81.586	Fundulus_heteroclitus
ENSDARG00000018814	esrp2	99	73.378	ENSGALG00000003374	ESRP2	99	73.919	Gallus_gallus
ENSDARG00000018814	esrp2	99	79.039	ENSGAFG00000009225	esrp2	99	80.374	Gambusia_affinis
ENSDARG00000018814	esrp2	99	79.491	ENSGACG00000016359	esrp2	99	79.491	Gasterosteus_aculeatus
ENSDARG00000018814	esrp2	99	81.004	ENSLOCG00000008062	esrp2	99	81.140	Lepisosteus_oculatus
ENSDARG00000018814	esrp2	100	81.402	ENSPKIG00000021343	esrp2	100	82.345	Paramormyrops_kingsleyae
ENSDARG00000018814	esrp2	99	79.167	ENSPLAG00000016250	esrp2	99	80.376	Poecilia_latipinna
ENSDARG00000018814	esrp2	99	78.905	ENSPREG00000002991	esrp2	99	80.240	Poecilia_reticulata
ENSDARG00000018814	esrp2	70	64.938	ENSSHAG00000000063	-	99	65.768	Sarcophilus_harrisii
ENSDARG00000018814	esrp2	99	78.495	ENSTRUG00000007941	esrp2	99	79.301	Takifugu_rubripes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	-	ISS	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0043484	regulation of RNA splicing	-	IEA	Process
GO:0043484	regulation of RNA splicing	-	ISS	Process