EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000018854 (Gene tree)
Gene ID: 552961
Gene Symbol: scaf4b
Alias: im:6900467|si:ch211-245g11.2
Full Name: SR-related CTD-associated factor 4b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 61567 bases
Position: chr15:42285643-42347209
Accession: ZDB-GENE-050506-42
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000126734	RRM_1	PF00076.22	9.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000152731	-	3473	XM_017351261	ENSDARP00000126734	905 (aa)	XP_017206750	R4GE22
ENSDART00000129218	-	599	-	-	- (aa)	-	-
ENSDART00000099234	-	2350	-	ENSDARP00000090006	729 (aa)	-	A0A0A0MPK9
ENSDART00000130404	-	863	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000018854's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000018854's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000018854	scaf4b	62	61.170	ENSAPOG00000019615	scaf4b	57	61.326	Acanthochromis_polyacanthus
ENSDARG00000018854	scaf4b	68	57.193	ENSAOCG00000010433	scaf4b	55	65.839	Amphiprion_ocellaris
ENSDARG00000018854	scaf4b	68	57.193	ENSAPEG00000010913	scaf4b	53	67.974	Amphiprion_percula
ENSDARG00000018854	scaf4b	56	71.333	ENSATEG00000011758	scaf4b	51	72.028	Anabas_testudineus
ENSDARG00000018854	scaf4b	64	59.011	ENSACLG00000024833	scaf4b	57	62.286	Astatotilapia_calliptera
ENSDARG00000018854	scaf4b	56	61.644	ENSCAFG00020026019	SCAF4	51	61.644	Canis_lupus_dingo
ENSDARG00000018854	scaf4b	59	61.963	ENSCSEG00000012808	-	54	62.745	Cynoglossus_semilaevis
ENSDARG00000018854	scaf4b	70	56.537	ENSCVAG00000009142	scaf4b	54	67.974	Cyprinodon_variegatus
ENSDARG00000018854	scaf4b	57	70.470	ENSFHEG00000007634	scaf4b	52	70.000	Fundulus_heteroclitus
ENSDARG00000018854	scaf4b	66	60.112	ENSIPUG00000019311	-	67	59.763	Ictalurus_punctatus
ENSDARG00000018854	scaf4b	75	57.042	ENSKMAG00000005742	scaf4b	52	70.423	Kryptolebias_marmoratus
ENSDARG00000018854	scaf4b	73	56.690	ENSORLG00000003420	scaf4b	58	62.286	Oryzias_latipes
ENSDARG00000018854	scaf4b	73	56.842	ENSORLG00020013853	scaf4b	76	55.396	Oryzias_latipes_hni
ENSDARG00000018854	scaf4b	72	56.184	ENSPLAG00000004403	-	52	68.627	Poecilia_latipinna
ENSDARG00000018854	scaf4b	84	56.184	ENSPMEG00000006666	-	52	68.627	Poecilia_mexicana
ENSDARG00000018854	scaf4b	59	66.667	ENSPREG00000013510	scaf4b	52	67.320	Poecilia_reticulata
ENSDARG00000018854	scaf4b	79	58.042	ENSPNYG00000010526	scaf4b	57	62.286	Pundamilia_nyererei
ENSDARG00000018854	scaf4b	62	66.129	ENSSMAG00000003738	scaf4b	53	68.627	Scophthalmus_maximus
ENSDARG00000018854	scaf4b	57	72.535	ENSSDUG00000012380	scaf4b	51	72.535	Seriola_dumerili
ENSDARG00000018854	scaf4b	57	72.535	ENSSLDG00000023152	-	51	72.535	Seriola_lalandi_dorsalis
ENSDARG00000018854	scaf4b	67	57.078	ENSTRUG00000009536	-	57	64.417	Takifugu_rubripes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0008150	biological_process	-	ND	Process