EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000018904 (Gene tree)
Gene ID: 406326
Gene Symbol: cstf3
Alias: cleavage stimulation factor|3 pre-RNA|subunit 3|wu:fa99c02|wu:fb18b09|zgc:56028
Full Name: cleavage stimulation factor%2C 3' pre-RNA%2C subunit 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 27572 bases
Position: chr18:45734297-45761868
Accession: ZDB-GENE-040426-1997
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000003969	Suf	PF05843.14	3.2e-85	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000025423	-	2683	-	ENSDARP00000003969	716 (aa)	-	F1QIB2

Gene Model

Click here to download ENSDARG00000018904's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000018904's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000018904	cstf3	100	90.934	ENSG00000176102	CSTF3	100	90.934	Homo_sapiens
ENSDARG00000018904	cstf3	100	94.700	ENSAPOG00000014054	cstf3	100	94.700	Acanthochromis_polyacanthus
ENSDARG00000018904	cstf3	99	91.537	ENSAMEG00000007187	CSTF3	98	91.537	Ailuropoda_melanoleuca
ENSDARG00000018904	cstf3	87	89.583	ENSACIG00000005539	cstf3	100	89.583	Amphilophus_citrinellus
ENSDARG00000018904	cstf3	100	94.561	ENSAOCG00000010930	cstf3	100	94.561	Amphiprion_ocellaris
ENSDARG00000018904	cstf3	100	94.561	ENSAPEG00000007903	cstf3	100	94.561	Amphiprion_percula
ENSDARG00000018904	cstf3	100	94.700	ENSATEG00000000190	cstf3	100	94.700	Anabas_testudineus
ENSDARG00000018904	cstf3	99	92.232	ENSAPLG00000007217	CSTF3	100	92.232	Anas_platyrhynchos
ENSDARG00000018904	cstf3	100	92.618	ENSACAG00000002823	CSTF3	100	92.618	Anolis_carolinensis
ENSDARG00000018904	cstf3	100	90.934	ENSANAG00000020699	CSTF3	95	96.852	Aotus_nancymaae
ENSDARG00000018904	cstf3	98	95.170	ENSACLG00000007820	cstf3	100	94.561	Astatotilapia_calliptera
ENSDARG00000018904	cstf3	100	93.026	ENSAMXG00000014198	cstf3	100	93.305	Astyanax_mexicanus
ENSDARG00000018904	cstf3	100	90.934	ENSBTAG00000008617	CSTF3	100	91.395	Bos_taurus
ENSDARG00000018904	cstf3	97	47.891	WBGene00006307	suf-1	99	47.891	Caenorhabditis_elegans
ENSDARG00000018904	cstf3	100	90.934	ENSCJAG00000005533	CSTF3	100	90.934	Callithrix_jacchus
ENSDARG00000018904	cstf3	100	91.074	ENSCAFG00000007264	CSTF3	100	91.074	Canis_familiaris
ENSDARG00000018904	cstf3	99	91.678	ENSCAFG00020002715	CSTF3	99	91.678	Canis_lupus_dingo
ENSDARG00000018904	cstf3	98	90.185	ENSCHIG00000016418	CSTF3	100	90.720	Capra_hircus
ENSDARG00000018904	cstf3	99	91.678	ENSTSYG00000000451	CSTF3	99	97.333	Carlito_syrichta
ENSDARG00000018904	cstf3	83	89.125	ENSCAPG00000010958	CSTF3	98	89.125	Cavia_aperea
ENSDARG00000018904	cstf3	100	91.074	ENSCPOG00000005545	CSTF3	100	91.074	Cavia_porcellus
ENSDARG00000018904	cstf3	100	90.934	ENSCCAG00000024790	CSTF3	96	97.333	Cebus_capucinus
ENSDARG00000018904	cstf3	100	90.934	ENSCATG00000007080	CSTF3	100	90.934	Cercocebus_atys
ENSDARG00000018904	cstf3	100	90.934	ENSCLAG00000016179	CSTF3	100	90.934	Chinchilla_lanigera
ENSDARG00000018904	cstf3	78	98.120	ENSCHOG00000002497	CSTF3	79	98.120	Choloepus_hoffmanni
ENSDARG00000018904	cstf3	99	92.113	ENSCPBG00000006753	CSTF3	99	92.113	Chrysemys_picta_bellii
ENSDARG00000018904	cstf3	99	61.634	ENSCING00000006401	-	99	61.773	Ciona_intestinalis
ENSDARG00000018904	cstf3	98	61.376	ENSCSAVG00000004851	-	100	61.376	Ciona_savignyi
ENSDARG00000018904	cstf3	100	90.934	ENSCANG00000035468	CSTF3	100	90.934	Colobus_angolensis_palliatus
ENSDARG00000018904	cstf3	100	90.795	ENSCGRG00001014773	Cstf3	100	90.795	Cricetulus_griseus_chok1gshd
ENSDARG00000018904	cstf3	100	90.795	ENSCGRG00000004142	Cstf3	100	90.795	Cricetulus_griseus_crigri
ENSDARG00000018904	cstf3	100	94.134	ENSCSEG00000014283	cstf3	100	94.134	Cynoglossus_semilaevis
ENSDARG00000018904	cstf3	100	93.305	ENSCVAG00000019739	cstf3	100	93.305	Cyprinodon_variegatus
ENSDARG00000018904	cstf3	99	91.678	ENSDNOG00000007366	CSTF3	99	91.678	Dasypus_novemcinctus
ENSDARG00000018904	cstf3	99	84.062	ENSDORG00000005898	Cstf3	99	84.062	Dipodomys_ordii
ENSDARG00000018904	cstf3	98	57.083	FBgn0003559	su(f)	98	57.083	Drosophila_melanogaster
ENSDARG00000018904	cstf3	90	85.514	ENSETEG00000017097	CSTF3	90	85.514	Echinops_telfairi
ENSDARG00000018904	cstf3	84	75.124	ENSEBUG00000015459	cstf3	96	75.124	Eptatretus_burgeri
ENSDARG00000018904	cstf3	98	91.714	ENSEASG00005019884	CSTF3	97	97.124	Equus_asinus_asinus
ENSDARG00000018904	cstf3	98	91.714	ENSECAG00000023338	CSTF3	97	97.124	Equus_caballus
ENSDARG00000018904	cstf3	100	85.914	ENSEEUG00000015167	CSTF3	100	85.914	Erinaceus_europaeus
ENSDARG00000018904	cstf3	100	92.887	ENSELUG00000023393	cstf3	100	92.887	Esox_lucius
ENSDARG00000018904	cstf3	100	91.074	ENSFCAG00000030711	CSTF3	100	91.074	Felis_catus
ENSDARG00000018904	cstf3	93	93.393	ENSFALG00000010764	CSTF3	100	90.630	Ficedula_albicollis
ENSDARG00000018904	cstf3	100	90.934	ENSFDAG00000012082	CSTF3	100	90.934	Fukomys_damarensis
ENSDARG00000018904	cstf3	100	92.887	ENSFHEG00000020623	cstf3	100	92.887	Fundulus_heteroclitus
ENSDARG00000018904	cstf3	100	92.479	ENSGMOG00000012275	cstf3	100	92.479	Gadus_morhua
ENSDARG00000018904	cstf3	99	91.972	ENSGALG00000011685	CSTF3	99	91.972	Gallus_gallus
ENSDARG00000018904	cstf3	100	93.863	ENSGAFG00000002181	cstf3	100	93.863	Gambusia_affinis
ENSDARG00000018904	cstf3	100	93.863	ENSGACG00000015997	cstf3	100	93.863	Gasterosteus_aculeatus
ENSDARG00000018904	cstf3	99	92.113	ENSGAGG00000006200	CSTF3	99	92.113	Gopherus_agassizii
ENSDARG00000018904	cstf3	99	85.896	ENSGGOG00000026591	CSTF3	96	92.444	Gorilla_gorilla
ENSDARG00000018904	cstf3	98	95.028	ENSHBUG00000016656	cstf3	100	94.421	Haplochromis_burtoni
ENSDARG00000018904	cstf3	100	90.795	ENSHGLG00000017834	CSTF3	100	90.795	Heterocephalus_glaber_female
ENSDARG00000018904	cstf3	100	90.795	ENSHGLG00100018042	CSTF3	100	90.795	Heterocephalus_glaber_male
ENSDARG00000018904	cstf3	98	90.780	ENSHCOG00000015218	cstf3	100	90.237	Hippocampus_comes
ENSDARG00000018904	cstf3	100	93.156	ENSIPUG00000013170	CSTF3	100	93.156	Ictalurus_punctatus
ENSDARG00000018904	cstf3	100	90.934	ENSSTOG00000013306	CSTF3	100	90.934	Ictidomys_tridecemlineatus
ENSDARG00000018904	cstf3	99	81.805	ENSJJAG00000018430	Cstf3	98	81.805	Jaculus_jaculus
ENSDARG00000018904	cstf3	100	93.445	ENSKMAG00000010916	cstf3	100	93.445	Kryptolebias_marmoratus
ENSDARG00000018904	cstf3	100	93.863	ENSLBEG00000002306	cstf3	100	93.863	Labrus_bergylta
ENSDARG00000018904	cstf3	100	90.782	ENSLACG00000017296	CSTF3	100	90.782	Latimeria_chalumnae
ENSDARG00000018904	cstf3	100	94.561	ENSLOCG00000004415	cstf3	100	94.561	Lepisosteus_oculatus
ENSDARG00000018904	cstf3	100	91.074	ENSLAFG00000008712	CSTF3	100	91.074	Loxodonta_africana
ENSDARG00000018904	cstf3	100	90.934	ENSMFAG00000029516	CSTF3	100	90.934	Macaca_fascicularis
ENSDARG00000018904	cstf3	100	90.934	ENSMMUG00000002542	CSTF3	100	90.934	Macaca_mulatta
ENSDARG00000018904	cstf3	100	90.934	ENSMNEG00000021807	CSTF3	100	90.934	Macaca_nemestrina
ENSDARG00000018904	cstf3	100	90.934	ENSMLEG00000039594	CSTF3	97	95.111	Mandrillus_leucophaeus
ENSDARG00000018904	cstf3	100	94.282	ENSMAMG00000020423	cstf3	100	94.282	Mastacembelus_armatus
ENSDARG00000018904	cstf3	98	95.170	ENSMZEG00005012082	cstf3	100	94.561	Maylandia_zebra
ENSDARG00000018904	cstf3	99	91.972	ENSMGAG00000001383	CSTF3	99	91.972	Meleagris_gallopavo
ENSDARG00000018904	cstf3	100	90.656	ENSMAUG00000002487	Cstf3	100	90.656	Mesocricetus_auratus
ENSDARG00000018904	cstf3	100	90.795	ENSMICG00000004784	CSTF3	100	90.795	Microcebus_murinus
ENSDARG00000018904	cstf3	100	90.795	ENSMOCG00000017583	Cstf3	100	90.795	Microtus_ochrogaster
ENSDARG00000018904	cstf3	99	94.342	ENSMMOG00000016026	cstf3	94	94.342	Mola_mola
ENSDARG00000018904	cstf3	100	91.074	ENSMODG00000009745	-	100	91.074	Monodelphis_domestica
ENSDARG00000018904	cstf3	100	79.498	ENSMODG00000025205	-	100	79.498	Monodelphis_domestica
ENSDARG00000018904	cstf3	100	94.142	ENSMALG00000012050	cstf3	100	94.142	Monopterus_albus
ENSDARG00000018904	cstf3	100	90.795	MGP_CAROLIEiJ_G0024026	Cstf3	100	90.795	Mus_caroli
ENSDARG00000018904	cstf3	100	90.795	ENSMUSG00000027176	Cstf3	100	90.795	Mus_musculus
ENSDARG00000018904	cstf3	100	90.795	MGP_PahariEiJ_G0025464	Cstf3	100	90.795	Mus_pahari
ENSDARG00000018904	cstf3	100	90.795	MGP_SPRETEiJ_G0024939	Cstf3	100	90.795	Mus_spretus
ENSDARG00000018904	cstf3	100	90.934	ENSMPUG00000011457	CSTF3	100	90.934	Mustela_putorius_furo
ENSDARG00000018904	cstf3	99	91.678	ENSMLUG00000003073	-	99	91.678	Myotis_lucifugus
ENSDARG00000018904	cstf3	100	88.563	ENSMLUG00000026022	-	100	88.563	Myotis_lucifugus
ENSDARG00000018904	cstf3	100	90.795	ENSNGAG00000010677	Cstf3	100	90.795	Nannospalax_galili
ENSDARG00000018904	cstf3	87	94.712	ENSNBRG00000007345	cstf3	100	94.712	Neolamprologus_brichardi
ENSDARG00000018904	cstf3	100	90.934	ENSNLEG00000017901	CSTF3	97	94.889	Nomascus_leucogenys
ENSDARG00000018904	cstf3	73	90.440	ENSMEUG00000005640	-	100	90.440	Notamacropus_eugenii
ENSDARG00000018904	cstf3	67	90.667	ENSOPRG00000000199	-	67	90.667	Ochotona_princeps
ENSDARG00000018904	cstf3	100	90.934	ENSODEG00000016737	-	100	90.934	Octodon_degus
ENSDARG00000018904	cstf3	89	78.774	ENSODEG00000006311	-	97	78.774	Octodon_degus
ENSDARG00000018904	cstf3	98	95.170	ENSONIG00000005563	cstf3	100	94.561	Oreochromis_niloticus
ENSDARG00000018904	cstf3	90	90.462	ENSOANG00000015140	CSTF3	100	90.462	Ornithorhynchus_anatinus
ENSDARG00000018904	cstf3	100	90.795	ENSOCUG00000015417	CSTF3	100	90.795	Oryctolagus_cuniculus
ENSDARG00000018904	cstf3	100	92.179	ENSORLG00000009762	cstf3	100	92.179	Oryzias_latipes
ENSDARG00000018904	cstf3	100	92.179	ENSORLG00020005540	cstf3	100	92.179	Oryzias_latipes_hni
ENSDARG00000018904	cstf3	100	92.039	ENSORLG00015003551	cstf3	100	92.039	Oryzias_latipes_hsok
ENSDARG00000018904	cstf3	100	92.598	ENSOMEG00000003848	cstf3	100	92.598	Oryzias_melastigma
ENSDARG00000018904	cstf3	100	90.417	ENSOGAG00000010229	CSTF3	100	90.417	Otolemur_garnettii
ENSDARG00000018904	cstf3	90	90.824	ENSOARG00000017271	CSTF3	99	90.824	Ovis_aries
ENSDARG00000018904	cstf3	99	88.434	ENSPPAG00000027358	CSTF3	99	88.434	Pan_paniscus
ENSDARG00000018904	cstf3	100	91.074	ENSPPRG00000016852	CSTF3	100	91.074	Panthera_pardus
ENSDARG00000018904	cstf3	100	91.074	ENSPTIG00000008716	CSTF3	100	91.074	Panthera_tigris_altaica
ENSDARG00000018904	cstf3	100	90.934	ENSPTRG00000003485	CSTF3	100	90.934	Pan_troglodytes
ENSDARG00000018904	cstf3	100	90.934	ENSPANG00000013722	CSTF3	97	95.111	Papio_anubis
ENSDARG00000018904	cstf3	100	93.715	ENSPKIG00000023648	cstf3	100	93.715	Paramormyrops_kingsleyae
ENSDARG00000018904	cstf3	99	92.254	ENSPSIG00000009173	CSTF3	99	92.254	Pelodiscus_sinensis
ENSDARG00000018904	cstf3	76	97.441	ENSPMGG00000000164	cstf3	99	97.441	Periophthalmus_magnuspinnatus
ENSDARG00000018904	cstf3	100	90.795	ENSPEMG00000011481	Cstf3	100	90.795	Peromyscus_maniculatus_bairdii
ENSDARG00000018904	cstf3	99	78.762	ENSPMAG00000007282	cstf3	99	78.762	Petromyzon_marinus
ENSDARG00000018904	cstf3	99	77.324	ENSPCIG00000030419	-	89	77.606	Phascolarctos_cinereus
ENSDARG00000018904	cstf3	99	89.296	ENSPCIG00000026406	-	100	90.560	Phascolarctos_cinereus
ENSDARG00000018904	cstf3	100	93.863	ENSPFOG00000017239	cstf3	100	93.863	Poecilia_formosa
ENSDARG00000018904	cstf3	100	93.724	ENSPLAG00000009456	cstf3	100	93.724	Poecilia_latipinna
ENSDARG00000018904	cstf3	100	93.863	ENSPMEG00000010320	cstf3	100	93.863	Poecilia_mexicana
ENSDARG00000018904	cstf3	100	93.863	ENSPREG00000013549	cstf3	100	93.863	Poecilia_reticulata
ENSDARG00000018904	cstf3	100	90.934	ENSPPYG00000003375	CSTF3	100	90.934	Pongo_abelii
ENSDARG00000018904	cstf3	71	96.167	ENSPCAG00000008025	-	71	96.167	Procavia_capensis
ENSDARG00000018904	cstf3	100	85.774	ENSPCOG00000014417	CSTF3	100	85.774	Propithecus_coquereli
ENSDARG00000018904	cstf3	100	85.914	ENSPVAG00000002350	CSTF3	100	85.914	Pteropus_vampyrus
ENSDARG00000018904	cstf3	98	95.028	ENSPNYG00000018259	cstf3	100	94.421	Pundamilia_nyererei
ENSDARG00000018904	cstf3	100	95.391	ENSPNAG00000020182	cstf3	100	95.391	Pygocentrus_nattereri
ENSDARG00000018904	cstf3	87	90.240	ENSRNOG00000012089	Cstf3	100	90.240	Rattus_norvegicus
ENSDARG00000018904	cstf3	99	90.268	ENSRBIG00000044258	CSTF3	100	90.720	Rhinopithecus_bieti
ENSDARG00000018904	cstf3	100	90.934	ENSRROG00000043450	CSTF3	100	90.934	Rhinopithecus_roxellana
ENSDARG00000018904	cstf3	100	90.934	ENSSBOG00000024764	CSTF3	98	97.333	Saimiri_boliviensis_boliviensis
ENSDARG00000018904	cstf3	100	81.590	ENSSHAG00000003135	-	99	81.590	Sarcophilus_harrisii
ENSDARG00000018904	cstf3	99	91.396	ENSSHAG00000018128	-	99	91.396	Sarcophilus_harrisii
ENSDARG00000018904	cstf3	100	94.413	ENSSFOG00015022133	cstf3	100	94.413	Scleropages_formosus
ENSDARG00000018904	cstf3	100	93.863	ENSSMAG00000002197	cstf3	100	93.863	Scophthalmus_maximus
ENSDARG00000018904	cstf3	100	94.700	ENSSDUG00000020426	cstf3	100	94.700	Seriola_dumerili
ENSDARG00000018904	cstf3	100	94.561	ENSSLDG00000025649	cstf3	100	94.561	Seriola_lalandi_dorsalis
ENSDARG00000018904	cstf3	100	90.516	ENSSARG00000000391	CSTF3	100	90.516	Sorex_araneus
ENSDARG00000018904	cstf3	96	91.606	ENSSPUG00000010546	CSTF3	100	91.606	Sphenodon_punctatus
ENSDARG00000018904	cstf3	100	94.700	ENSSPAG00000004958	cstf3	100	94.700	Stegastes_partitus
ENSDARG00000018904	cstf3	99	90.642	ENSSSCG00000040954	CSTF3	100	90.642	Sus_scrofa
ENSDARG00000018904	cstf3	99	91.808	ENSTGUG00000005010	CSTF3	100	91.808	Taeniopygia_guttata
ENSDARG00000018904	cstf3	100	93.584	ENSTRUG00000004959	cstf3	100	93.584	Takifugu_rubripes
ENSDARG00000018904	cstf3	99	94.059	ENSTNIG00000013811	cstf3	98	94.059	Tetraodon_nigroviridis
ENSDARG00000018904	cstf3	90	88.474	ENSTBEG00000001544	CSTF3	90	88.474	Tupaia_belangeri
ENSDARG00000018904	cstf3	100	88.006	ENSTTRG00000016366	CSTF3	100	88.006	Tursiops_truncatus
ENSDARG00000018904	cstf3	99	91.396	ENSUMAG00000018971	CSTF3	100	90.400	Ursus_maritimus
ENSDARG00000018904	cstf3	100	90.795	ENSVPAG00000007800	CSTF3	100	90.795	Vicugna_pacos
ENSDARG00000018904	cstf3	99	91.678	ENSVVUG00000014938	CSTF3	100	90.720	Vulpes_vulpes
ENSDARG00000018904	cstf3	88	76.406	ENSXETG00000021399	cstf3	100	77.670	Xenopus_tropicalis
ENSDARG00000018904	cstf3	66	42.474	ENSXETG00000017946	-	99	42.474	Xenopus_tropicalis
ENSDARG00000018904	cstf3	87	93.429	ENSXCOG00000011741	cstf3	100	93.429	Xiphophorus_couchianus
ENSDARG00000018904	cstf3	100	93.584	ENSXMAG00000009545	cstf3	100	93.584	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0031123	RNA 3'-end processing	21873635.	IBA	Process