EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000019230 (Gene tree)
Gene ID: 337010
Gene Symbol: rpl7a
Alias: wu:fa95b03|zgc:73183|zgc:86667
Full Name: ribosomal protein L7a
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 3548 bases
Position: chr5:33284144-33287691
Accession: ZDB-GENE-031001-9
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000151111	Ribosomal_L7Ae	PF01248.26	4.9e-24	1	1
ENSDARP00000010055	Ribosomal_L7Ae	PF01248.26	4.9e-24	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000004238	-	969	-	ENSDARP00000010055	266 (aa)	-	Q6PBZ1
ENSDART00000132525	-	750	-	-	- (aa)	-	-
ENSDART00000137988	-	816	-	-	- (aa)	-	-
ENSDART00000184426	-	820	-	ENSDARP00000151111	266 (aa)	-	A0A2R8Q9K6
ENSDART00000137409	-	692	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000019230's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000019230's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000019230	rpl7a	94	92.829	ENSAPLG00000005247	RPL7A	99	92.857	Anas_platyrhynchos
ENSDARG00000019230	rpl7a	100	76.692	ENSANAG00000035965	-	100	76.692	Aotus_nancymaae
ENSDARG00000019230	rpl7a	55	89.796	ENSANAG00000021362	-	97	89.796	Aotus_nancymaae
ENSDARG00000019230	rpl7a	94	94.024	ENSAMXG00000012525	rpl7a	100	93.985	Astyanax_mexicanus
ENSDARG00000019230	rpl7a	73	86.082	ENSBTAG00000047286	-	85	86.082	Bos_taurus
ENSDARG00000019230	rpl7a	88	82.979	ENSCJAG00000048127	-	100	83.459	Callithrix_jacchus
ENSDARG00000019230	rpl7a	55	89.796	ENSCJAG00000040821	-	100	89.796	Callithrix_jacchus
ENSDARG00000019230	rpl7a	55	90.476	ENSCJAG00000044259	-	97	90.476	Callithrix_jacchus
ENSDARG00000019230	rpl7a	97	82.625	ENSCHIG00000023018	-	94	82.353	Capra_hircus
ENSDARG00000019230	rpl7a	55	73.973	ENSTSYG00000029336	-	100	73.973	Carlito_syrichta
ENSDARG00000019230	rpl7a	100	81.203	ENSCCAG00000033718	-	100	81.203	Cebus_capucinus
ENSDARG00000019230	rpl7a	55	90.476	ENSCATG00000032659	-	100	90.476	Cercocebus_atys
ENSDARG00000019230	rpl7a	55	88.276	ENSCATG00000031343	-	96	88.276	Cercocebus_atys
ENSDARG00000019230	rpl7a	94	83.600	ENSCSAG00000018506	-	99	84.151	Chlorocebus_sabaeus
ENSDARG00000019230	rpl7a	94	75.600	ENSCSAG00000018485	-	96	76.863	Chlorocebus_sabaeus
ENSDARG00000019230	rpl7a	92	80.408	ENSCSAG00000005053	-	96	80.392	Chlorocebus_sabaeus
ENSDARG00000019230	rpl7a	100	89.474	ENSCSAG00000019115	-	100	89.474	Chlorocebus_sabaeus
ENSDARG00000019230	rpl7a	94	93.625	ENSCPBG00000021161	-	100	93.609	Chrysemys_picta_bellii
ENSDARG00000019230	rpl7a	100	85.714	ENSCGRG00001020617	-	100	85.714	Cricetulus_griseus_chok1gshd
ENSDARG00000019230	rpl7a	100	81.203	ENSCGRG00000003429	-	100	81.203	Cricetulus_griseus_crigri
ENSDARG00000019230	rpl7a	100	57.519	ENSDNOG00000030713	-	94	57.540	Dasypus_novemcinctus
ENSDARG00000019230	rpl7a	79	77.251	ENSDORG00000027559	-	89	77.251	Dipodomys_ordii
ENSDARG00000019230	rpl7a	98	72.031	ENSEBUG00000015826	rpl7a	95	72.157	Eptatretus_burgeri
ENSDARG00000019230	rpl7a	100	94.737	ENSELUG00000023023	rpl7a	100	94.737	Esox_lucius
ENSDARG00000019230	rpl7a	71	67.196	ENSFCAG00000029566	-	92	67.196	Felis_catus
ENSDARG00000019230	rpl7a	62	67.683	ENSFCAG00000026737	-	95	67.683	Felis_catus
ENSDARG00000019230	rpl7a	94	92.430	ENSFALG00000001502	-	88	92.481	Ficedula_albicollis
ENSDARG00000019230	rpl7a	94	92.829	ENSGAGG00000010277	-	96	92.481	Gopherus_agassizii
ENSDARG00000019230	rpl7a	54	89.041	ENSGGOG00000025516	-	95	89.041	Gorilla_gorilla
ENSDARG00000019230	rpl7a	57	87.500	ENSGGOG00000023680	-	97	89.796	Gorilla_gorilla
ENSDARG00000019230	rpl7a	96	82.745	ENSGGOG00000026585	-	99	79.602	Gorilla_gorilla
ENSDARG00000019230	rpl7a	94	72.400	ENSHGLG00000018482	-	100	73.308	Heterocephalus_glaber_female
ENSDARG00000019230	rpl7a	94	92.032	ENSHGLG00000013590	RPL7A	100	92.105	Heterocephalus_glaber_female
ENSDARG00000019230	rpl7a	94	72.400	ENSHGLG00000012167	-	100	72.489	Heterocephalus_glaber_female
ENSDARG00000019230	rpl7a	94	72.400	ENSHGLG00100004197	-	100	73.308	Heterocephalus_glaber_male
ENSDARG00000019230	rpl7a	94	92.032	ENSHGLG00100007783	RPL7A	100	92.105	Heterocephalus_glaber_male
ENSDARG00000019230	rpl7a	94	72.400	ENSHGLG00100007133	-	100	72.489	Heterocephalus_glaber_male
ENSDARG00000019230	rpl7a	94	95.219	ENSIPUG00000008146	rpl7a	100	95.113	Ictalurus_punctatus
ENSDARG00000019230	rpl7a	96	71.373	ENSSTOG00000031997	-	95	71.373	Ictidomys_tridecemlineatus
ENSDARG00000019230	rpl7a	56	76.667	ENSJJAG00000016802	-	99	76.667	Jaculus_jaculus
ENSDARG00000019230	rpl7a	94	69.478	ENSJJAG00000012899	-	99	69.355	Jaculus_jaculus
ENSDARG00000019230	rpl7a	100	70.370	ENSJJAG00000022569	-	95	70.270	Jaculus_jaculus
ENSDARG00000019230	rpl7a	94	76.892	ENSJJAG00000014376	-	100	77.820	Jaculus_jaculus
ENSDARG00000019230	rpl7a	100	79.699	ENSJJAG00000024026	-	100	79.699	Jaculus_jaculus
ENSDARG00000019230	rpl7a	95	91.270	ENSLACG00000018224	rpl7a	96	91.353	Latimeria_chalumnae
ENSDARG00000019230	rpl7a	94	92.032	ENSLAFG00000006436	-	95	92.268	Loxodonta_africana
ENSDARG00000019230	rpl7a	94	91.235	ENSMFAG00000027988	-	100	91.353	Macaca_fascicularis
ENSDARG00000019230	rpl7a	94	86.454	ENSMFAG00000044607	-	100	86.842	Macaca_fascicularis
ENSDARG00000019230	rpl7a	57	88.158	ENSMMUG00000012379	-	100	88.158	Macaca_mulatta
ENSDARG00000019230	rpl7a	94	86.853	ENSMMUG00000049182	-	100	87.500	Macaca_mulatta
ENSDARG00000019230	rpl7a	94	88.000	ENSMNEG00000025946	-	100	87.970	Macaca_nemestrina
ENSDARG00000019230	rpl7a	100	90.226	ENSMNEG00000005027	-	100	90.226	Macaca_nemestrina
ENSDARG00000019230	rpl7a	54	90.972	ENSMNEG00000037496	-	99	90.972	Macaca_nemestrina
ENSDARG00000019230	rpl7a	94	83.200	ENSMLEG00000012582	-	100	83.835	Mandrillus_leucophaeus
ENSDARG00000019230	rpl7a	55	76.871	ENSMAUG00000019197	-	97	76.871	Mesocricetus_auratus
ENSDARG00000019230	rpl7a	55	89.041	ENSMICG00000026491	-	95	89.041	Microcebus_murinus
ENSDARG00000019230	rpl7a	94	89.641	ENSMOCG00000008541	-	100	89.850	Microtus_ochrogaster
ENSDARG00000019230	rpl7a	100	72.556	ENSMPUG00000017429	-	94	73.228	Mustela_putorius_furo
ENSDARG00000019230	rpl7a	96	59.375	ENSMPUG00000009401	-	94	59.375	Mustela_putorius_furo
ENSDARG00000019230	rpl7a	52	87.681	ENSMPUG00000012398	-	98	87.681	Mustela_putorius_furo
ENSDARG00000019230	rpl7a	94	62.651	ENSMPUG00000012594	-	94	62.651	Mustela_putorius_furo
ENSDARG00000019230	rpl7a	100	68.045	ENSMPUG00000003699	-	94	68.235	Mustela_putorius_furo
ENSDARG00000019230	rpl7a	94	79.600	ENSNLEG00000030063	-	100	80.451	Nomascus_leucogenys
ENSDARG00000019230	rpl7a	57	85.526	ENSNLEG00000030901	-	100	85.526	Nomascus_leucogenys
ENSDARG00000019230	rpl7a	100	89.098	ENSNLEG00000030504	-	100	89.098	Nomascus_leucogenys
ENSDARG00000019230	rpl7a	94	93.625	ENSMEUG00000014550	-	100	93.609	Notamacropus_eugenii
ENSDARG00000019230	rpl7a	93	92.339	ENSOANG00000007060	-	95	92.339	Ornithorhynchus_anatinus
ENSDARG00000019230	rpl7a	94	87.649	ENSOCUG00000022874	-	100	87.970	Oryctolagus_cuniculus
ENSDARG00000019230	rpl7a	87	68.103	ENSOCUG00000025450	-	99	68.103	Oryctolagus_cuniculus
ENSDARG00000019230	rpl7a	83	69.231	ENSOCUG00000027027	-	100	69.231	Oryctolagus_cuniculus
ENSDARG00000019230	rpl7a	98	52.490	ENSOGAG00000029360	-	95	54.183	Otolemur_garnettii
ENSDARG00000019230	rpl7a	100	85.714	ENSOGAG00000007682	-	100	85.714	Otolemur_garnettii
ENSDARG00000019230	rpl7a	97	87.645	ENSOARG00000004560	-	95	87.451	Ovis_aries
ENSDARG00000019230	rpl7a	94	85.433	ENSOARG00000003677	-	100	85.874	Ovis_aries
ENSDARG00000019230	rpl7a	100	81.716	ENSPPAG00000030172	-	95	89.041	Pan_paniscus
ENSDARG00000019230	rpl7a	98	79.771	ENSPPAG00000029689	-	97	80.392	Pan_paniscus
ENSDARG00000019230	rpl7a	96	82.745	ENSPPAG00000037938	-	99	79.803	Pan_paniscus
ENSDARG00000019230	rpl7a	55	86.395	ENSPPAG00000035063	-	97	86.395	Pan_paniscus
ENSDARG00000019230	rpl7a	55	68.493	ENSPPRG00000008233	-	95	68.493	Panthera_pardus
ENSDARG00000019230	rpl7a	94	90.837	ENSPTRG00000029310	-	100	90.977	Pan_troglodytes
ENSDARG00000019230	rpl7a	68	85.556	ENSPTRG00000044655	-	99	85.556	Pan_troglodytes
ENSDARG00000019230	rpl7a	55	85.714	ENSPTRG00000049410	-	97	85.714	Pan_troglodytes
ENSDARG00000019230	rpl7a	96	83.529	ENSPTRG00000051913	-	96	83.529	Pan_troglodytes
ENSDARG00000019230	rpl7a	98	79.771	ENSPTRG00000047886	-	97	80.392	Pan_troglodytes
ENSDARG00000019230	rpl7a	55	91.034	ENSPANG00000003750	-	96	91.034	Papio_anubis
ENSDARG00000019230	rpl7a	55	89.796	ENSPANG00000034498	-	100	89.796	Papio_anubis
ENSDARG00000019230	rpl7a	55	88.435	ENSPEMG00000013592	-	100	88.435	Peromyscus_maniculatus_bairdii
ENSDARG00000019230	rpl7a	100	78.652	ENSPCIG00000026434	-	95	79.608	Phascolarctos_cinereus
ENSDARG00000019230	rpl7a	94	80.080	ENSPCOG00000004337	-	100	80.827	Propithecus_coquereli
ENSDARG00000019230	rpl7a	96	92.157	ENSPNAG00000029194	rpl7a	100	93.197	Pygocentrus_nattereri
ENSDARG00000019230	rpl7a	94	85.259	ENSRNOG00000029310	AABR07049918.1	100	85.714	Rattus_norvegicus
ENSDARG00000019230	rpl7a	100	77.820	ENSRNOG00000022718	AC094246.2	100	77.820	Rattus_norvegicus
ENSDARG00000019230	rpl7a	98	89.615	ENSRNOG00000029423	AABR07052519.1	96	89.804	Rattus_norvegicus
ENSDARG00000019230	rpl7a	98	76.336	ENSRNOG00000014425	AABR07054456.1	97	76.471	Rattus_norvegicus
ENSDARG00000019230	rpl7a	100	88.346	ENSRNOG00000029130	AABR07057586.1	100	88.346	Rattus_norvegicus
ENSDARG00000019230	rpl7a	96	88.627	ENSRNOG00000031532	AABR07018167.1	96	88.627	Rattus_norvegicus
ENSDARG00000019230	rpl7a	94	86.800	ENSRNOG00000031902	AABR07027819.1	100	86.842	Rattus_norvegicus
ENSDARG00000019230	rpl7a	94	88.845	ENSRNOG00000028826	AC128901.1	100	89.098	Rattus_norvegicus
ENSDARG00000019230	rpl7a	94	88.048	ENSRNOG00000033652	AABR07045321.1	100	88.346	Rattus_norvegicus
ENSDARG00000019230	rpl7a	94	87.251	ENSRBIG00000010998	-	100	87.594	Rhinopithecus_bieti
ENSDARG00000019230	rpl7a	88	81.277	ENSRBIG00000037343	-	97	81.277	Rhinopithecus_bieti
ENSDARG00000019230	rpl7a	54	90.278	ENSRBIG00000007002	-	92	90.278	Rhinopithecus_bieti
ENSDARG00000019230	rpl7a	88	81.277	ENSRROG00000041577	-	97	81.277	Rhinopithecus_roxellana
ENSDARG00000019230	rpl7a	55	90.411	ENSRROG00000035341	-	95	90.411	Rhinopithecus_roxellana
ENSDARG00000019230	rpl7a	100	74.812	ENSSBOG00000033255	-	95	75.294	Saimiri_boliviensis_boliviensis
ENSDARG00000019230	rpl7a	91	45.868	ENSSSCG00000034232	-	93	63.964	Sus_scrofa
ENSDARG00000019230	rpl7a	94	92.430	ENSTGUG00000005463	-	99	92.481	Taeniopygia_guttata
ENSDARG00000019230	rpl7a	94	94.024	ENSTNIG00000007501	rpl7a	99	93.985	Tetraodon_nigroviridis
ENSDARG00000019230	rpl7a	55	70.548	ENSTBEG00000003344	-	97	70.548	Tupaia_belangeri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000470	maturation of LSU-rRNA	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005840	ribosome	-	IEA	Component
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:1990904	ribonucleoprotein complex	-	IEA	Component