EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000019280 (Gene tree)
Gene ID: 569778
Gene Symbol: larsb
Alias: cb667|lars|wu:fb36b12
Full Name: leucyl-tRNA synthetase b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 43571 bases
Position: chr21:41026612-41070182
Accession: ZDB-GENE-030114-7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000113140	tRNA-synt_1g	PF09334.11	5.9e-09	1	1
ENSDARP00000003359	tRNA-synt_1g	PF09334.11	6.5e-09	1	1
ENSDARP00000113140	Anticodon_1	PF08264.13	1.7e-16	1	1
ENSDARP00000003359	Anticodon_1	PF08264.13	1.8e-16	1	1
ENSDARP00000003359	tRNA-synt_1	PF00133.22	4e-10	1	1
ENSDARP00000113140	tRNA-synt_1	PF00133.22	2.2e-09	1	1
ENSDARP00000113140	tRNA-synt_1e	PF01406.19	1.8e-06	1	1
ENSDARP00000003359	tRNA-synt_1e	PF01406.19	2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000026064	-	5362	XM_693187	ENSDARP00000003359	799 (aa)	XP_698279	F1QFN3
ENSDART00000143749	-	2973	-	ENSDARP00000113140	748 (aa)	-	F1RAQ9

Gene Model

Click here to download ENSDARG00000019280's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000019280's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000019280	larsb	100	79.725	ENSG00000133706	LARS	99	76.860	Homo_sapiens
ENSDARG00000019280	larsb	100	88.486	ENSAPOG00000010585	larsb	69	88.486	Acanthochromis_polyacanthus
ENSDARG00000019280	larsb	100	79.900	ENSAMEG00000017584	LARS	68	79.900	Ailuropoda_melanoleuca
ENSDARG00000019280	larsb	100	86.142	ENSACIG00000014026	larsb	68	86.052	Amphilophus_citrinellus
ENSDARG00000019280	larsb	100	88.360	ENSAOCG00000016931	larsb	68	88.360	Amphiprion_ocellaris
ENSDARG00000019280	larsb	100	88.360	ENSAPEG00000017720	larsb	68	88.360	Amphiprion_percula
ENSDARG00000019280	larsb	100	82.979	ENSATEG00000010441	larsb	66	82.979	Anabas_testudineus
ENSDARG00000019280	larsb	100	79.474	ENSAPLG00000008145	LARS	70	79.474	Anas_platyrhynchos
ENSDARG00000019280	larsb	100	77.847	ENSACAG00000013916	LARS	68	77.847	Anolis_carolinensis
ENSDARG00000019280	larsb	99	79.518	ENSANAG00000014375	LARS	70	79.518	Aotus_nancymaae
ENSDARG00000019280	larsb	100	87.985	ENSACLG00000010881	larsb	69	87.985	Astatotilapia_calliptera
ENSDARG00000019280	larsb	100	91.114	ENSAMXG00000019979	larsb	68	91.114	Astyanax_mexicanus
ENSDARG00000019280	larsb	100	78.473	ENSBTAG00000006765	LARS	68	78.473	Bos_taurus
ENSDARG00000019280	larsb	99	52.547	WBGene00003073	lars-1	68	52.547	Caenorhabditis_elegans
ENSDARG00000019280	larsb	100	79.850	ENSCJAG00000021314	LARS	71	79.850	Callithrix_jacchus
ENSDARG00000019280	larsb	100	79.975	ENSCAFG00000006431	LARS	68	79.975	Canis_familiaris
ENSDARG00000019280	larsb	100	79.975	ENSCAFG00020025009	LARS	68	79.975	Canis_lupus_dingo
ENSDARG00000019280	larsb	100	78.473	ENSCHIG00000014949	LARS	68	78.473	Capra_hircus
ENSDARG00000019280	larsb	100	79.599	ENSTSYG00000001253	LARS	68	79.599	Carlito_syrichta
ENSDARG00000019280	larsb	99	66.043	ENSCAPG00000015676	LARS	69	66.580	Cavia_aperea
ENSDARG00000019280	larsb	100	78.849	ENSCPOG00000012329	LARS	68	78.849	Cavia_porcellus
ENSDARG00000019280	larsb	100	80.350	ENSCCAG00000020789	LARS	68	80.350	Cebus_capucinus
ENSDARG00000019280	larsb	100	79.725	ENSCATG00000033463	LARS	71	79.725	Cercocebus_atys
ENSDARG00000019280	larsb	100	78.598	ENSCLAG00000011193	LARS	68	78.598	Chinchilla_lanigera
ENSDARG00000019280	larsb	99	79.695	ENSCSAG00000012280	LARS	66	79.695	Chlorocebus_sabaeus
ENSDARG00000019280	larsb	85	75.000	ENSCHOG00000009309	LARS	58	75.000	Choloepus_hoffmanni
ENSDARG00000019280	larsb	100	80.225	ENSCPBG00000008415	LARS	68	80.225	Chrysemys_picta_bellii
ENSDARG00000019280	larsb	98	62.738	ENSCING00000008535	-	67	62.738	Ciona_intestinalis
ENSDARG00000019280	larsb	100	62.219	ENSCSAVG00000009040	-	64	68.534	Ciona_savignyi
ENSDARG00000019280	larsb	100	79.599	ENSCANG00000031137	LARS	68	79.599	Colobus_angolensis_palliatus
ENSDARG00000019280	larsb	99	76.707	ENSCGRG00001004647	Lars	72	76.732	Cricetulus_griseus_chok1gshd
ENSDARG00000019280	larsb	100	74.844	ENSCGRG00000007284	Lars	67	74.844	Cricetulus_griseus_crigri
ENSDARG00000019280	larsb	100	87.359	ENSCSEG00000014984	larsb	67	87.359	Cynoglossus_semilaevis
ENSDARG00000019280	larsb	100	88.861	ENSCVAG00000014685	larsb	68	88.861	Cyprinodon_variegatus
ENSDARG00000019280	larsb	100	78.082	ENSDNOG00000017963	LARS	71	78.082	Dasypus_novemcinctus
ENSDARG00000019280	larsb	100	78.348	ENSDORG00000014913	Lars	69	78.348	Dipodomys_ordii
ENSDARG00000019280	larsb	100	56.436	FBgn0284253	LeuRS	68	56.436	Drosophila_melanogaster
ENSDARG00000019280	larsb	92	61.749	ENSETEG00000003145	LARS	65	61.749	Echinops_telfairi
ENSDARG00000019280	larsb	89	58.392	ENSEBUG00000014985	larsb	63	58.392	Eptatretus_burgeri
ENSDARG00000019280	larsb	100	79.474	ENSEASG00005020569	LARS	74	79.474	Equus_asinus_asinus
ENSDARG00000019280	larsb	100	79.474	ENSECAG00000008963	LARS	71	79.474	Equus_caballus
ENSDARG00000019280	larsb	88	90.909	ENSEEUG00000014854	LARS	60	90.909	Erinaceus_europaeus
ENSDARG00000019280	larsb	100	85.857	ENSELUG00000023311	larsb	68	85.857	Esox_lucius
ENSDARG00000019280	larsb	100	79.224	ENSFCAG00000008715	LARS	68	79.224	Felis_catus
ENSDARG00000019280	larsb	100	80.476	ENSFALG00000003209	LARS	63	80.476	Ficedula_albicollis
ENSDARG00000019280	larsb	100	79.099	ENSFDAG00000020764	LARS	68	79.099	Fukomys_damarensis
ENSDARG00000019280	larsb	87	90.435	ENSFHEG00000010437	larsb	65	90.435	Fundulus_heteroclitus
ENSDARG00000019280	larsb	100	83.750	ENSGMOG00000013645	larsb	68	83.750	Gadus_morhua
ENSDARG00000019280	larsb	100	80.225	ENSGALG00000007494	LARS	89	81.048	Gallus_gallus
ENSDARG00000019280	larsb	100	87.484	ENSGAFG00000005029	larsb	68	87.484	Gambusia_affinis
ENSDARG00000019280	larsb	100	86.500	ENSGACG00000020720	larsb	68	86.500	Gasterosteus_aculeatus
ENSDARG00000019280	larsb	100	79.224	ENSGAGG00000002353	LARS	68	79.224	Gopherus_agassizii
ENSDARG00000019280	larsb	100	79.599	ENSGGOG00000004103	LARS	68	79.599	Gorilla_gorilla
ENSDARG00000019280	larsb	100	86.233	ENSHBUG00000003051	larsb	65	89.415	Haplochromis_burtoni
ENSDARG00000019280	larsb	100	79.224	ENSHGLG00000006937	LARS	68	79.224	Heterocephalus_glaber_female
ENSDARG00000019280	larsb	100	79.224	ENSHGLG00100002801	LARS	68	79.224	Heterocephalus_glaber_male
ENSDARG00000019280	larsb	100	86.358	ENSHCOG00000003651	larsb	68	86.358	Hippocampus_comes
ENSDARG00000019280	larsb	100	87.109	ENSIPUG00000010756	lars	68	87.109	Ictalurus_punctatus
ENSDARG00000019280	larsb	100	79.099	ENSSTOG00000002356	LARS	68	79.099	Ictidomys_tridecemlineatus
ENSDARG00000019280	larsb	100	77.847	ENSJJAG00000015265	Lars	68	77.847	Jaculus_jaculus
ENSDARG00000019280	larsb	100	86.984	ENSKMAG00000009903	larsb	67	86.984	Kryptolebias_marmoratus
ENSDARG00000019280	larsb	100	87.359	ENSLBEG00000025237	larsb	67	87.359	Labrus_bergylta
ENSDARG00000019280	larsb	100	80.225	ENSLACG00000009321	LARS	68	80.225	Latimeria_chalumnae
ENSDARG00000019280	larsb	100	85.106	ENSLOCG00000010442	larsb	68	85.106	Lepisosteus_oculatus
ENSDARG00000019280	larsb	100	78.598	ENSLAFG00000000318	LARS	68	78.598	Loxodonta_africana
ENSDARG00000019280	larsb	100	79.975	ENSMFAG00000038685	LARS	68	79.975	Macaca_fascicularis
ENSDARG00000019280	larsb	100	79.725	ENSMMUG00000029787	LARS	68	79.725	Macaca_mulatta
ENSDARG00000019280	larsb	100	76.971	ENSMNEG00000044014	LARS	67	76.971	Macaca_nemestrina
ENSDARG00000019280	larsb	100	79.975	ENSMLEG00000037563	LARS	68	79.975	Mandrillus_leucophaeus
ENSDARG00000019280	larsb	100	87.484	ENSMAMG00000021385	larsb	67	87.484	Mastacembelus_armatus
ENSDARG00000019280	larsb	100	87.860	ENSMZEG00005002662	larsb	68	87.860	Maylandia_zebra
ENSDARG00000019280	larsb	100	79.850	ENSMGAG00000009388	LARS	70	79.850	Meleagris_gallopavo
ENSDARG00000019280	larsb	100	72.340	ENSMAUG00000003063	Lars	70	72.340	Mesocricetus_auratus
ENSDARG00000019280	larsb	100	79.474	ENSMICG00000035589	-	68	79.474	Microcebus_murinus
ENSDARG00000019280	larsb	99	66.244	ENSMICG00000035435	-	71	66.244	Microcebus_murinus
ENSDARG00000019280	larsb	100	78.098	ENSMOCG00000002092	Lars	69	77.848	Microtus_ochrogaster
ENSDARG00000019280	larsb	100	85.857	ENSMMOG00000013802	larsb	68	85.857	Mola_mola
ENSDARG00000019280	larsb	100	78.723	ENSMODG00000010231	LARS	68	78.723	Monodelphis_domestica
ENSDARG00000019280	larsb	100	85.482	ENSMALG00000018444	larsb	67	85.482	Monopterus_albus
ENSDARG00000019280	larsb	100	77.722	MGP_CAROLIEiJ_G0022225	Lars	68	77.722	Mus_caroli
ENSDARG00000019280	larsb	100	77.472	ENSMUSG00000024493	Lars	68	77.472	Mus_musculus
ENSDARG00000019280	larsb	100	77.347	MGP_PahariEiJ_G0018958	Lars	68	77.347	Mus_pahari
ENSDARG00000019280	larsb	100	77.847	MGP_SPRETEiJ_G0023135	Lars	68	77.847	Mus_spretus
ENSDARG00000019280	larsb	100	79.850	ENSMPUG00000007844	LARS	68	79.850	Mustela_putorius_furo
ENSDARG00000019280	larsb	100	78.875	ENSMLUG00000001125	LARS	68	78.875	Myotis_lucifugus
ENSDARG00000019280	larsb	100	77.096	ENSNGAG00000011596	Lars	68	77.096	Nannospalax_galili
ENSDARG00000019280	larsb	100	87.359	ENSNBRG00000005764	larsb	68	87.359	Neolamprologus_brichardi
ENSDARG00000019280	larsb	100	79.099	ENSNLEG00000009816	LARS	68	79.099	Nomascus_leucogenys
ENSDARG00000019280	larsb	89	74.400	ENSOPRG00000003076	LARS	65	74.400	Ochotona_princeps
ENSDARG00000019280	larsb	100	78.723	ENSODEG00000004882	LARS	70	78.723	Octodon_degus
ENSDARG00000019280	larsb	100	87.484	ENSONIG00000008493	larsb	68	86.733	Oreochromis_niloticus
ENSDARG00000019280	larsb	100	77.278	ENSOANG00000005755	LARS	68	77.278	Ornithorhynchus_anatinus
ENSDARG00000019280	larsb	100	79.349	ENSOCUG00000015684	LARS	68	79.349	Oryctolagus_cuniculus
ENSDARG00000019280	larsb	100	86.984	ENSORLG00000001622	larsb	67	86.984	Oryzias_latipes
ENSDARG00000019280	larsb	100	87.109	ENSORLG00020019950	larsb	69	87.109	Oryzias_latipes_hni
ENSDARG00000019280	larsb	100	87.359	ENSORLG00015003895	larsb	67	87.359	Oryzias_latipes_hsok
ENSDARG00000019280	larsb	100	87.359	ENSOMEG00000005677	larsb	69	87.359	Oryzias_melastigma
ENSDARG00000019280	larsb	100	78.875	ENSOGAG00000008750	LARS	70	78.875	Otolemur_garnettii
ENSDARG00000019280	larsb	100	78.223	ENSOARG00000015911	-	68	78.223	Ovis_aries
ENSDARG00000019280	larsb	100	78.250	ENSOARG00000002454	-	68	78.250	Ovis_aries
ENSDARG00000019280	larsb	100	79.599	ENSPPAG00000027964	LARS	71	79.599	Pan_paniscus
ENSDARG00000019280	larsb	100	79.599	ENSPPRG00000023492	LARS	68	79.599	Panthera_pardus
ENSDARG00000019280	larsb	100	79.474	ENSPTIG00000013110	LARS	68	79.474	Panthera_tigris_altaica
ENSDARG00000019280	larsb	100	79.474	ENSPTRG00000017372	LARS	68	79.474	Pan_troglodytes
ENSDARG00000019280	larsb	100	79.725	ENSPANG00000002663	LARS	68	79.725	Papio_anubis
ENSDARG00000019280	larsb	97	85.142	ENSPKIG00000006650	larsb	68	81.818	Paramormyrops_kingsleyae
ENSDARG00000019280	larsb	100	80.225	ENSPSIG00000015641	LARS	68	80.225	Pelodiscus_sinensis
ENSDARG00000019280	larsb	100	86.859	ENSPMGG00000019556	LARS	99	86.859	Periophthalmus_magnuspinnatus
ENSDARG00000019280	larsb	100	72.466	ENSPEMG00000010933	Lars	66	72.466	Peromyscus_maniculatus_bairdii
ENSDARG00000019280	larsb	80	61.360	ENSPMAG00000005301	larsb	99	61.360	Petromyzon_marinus
ENSDARG00000019280	larsb	100	77.847	ENSPCIG00000030572	LARS	68	77.847	Phascolarctos_cinereus
ENSDARG00000019280	larsb	100	88.235	ENSPFOG00000002361	larsb	67	88.235	Poecilia_formosa
ENSDARG00000019280	larsb	100	88.235	ENSPLAG00000016550	larsb	67	88.235	Poecilia_latipinna
ENSDARG00000019280	larsb	100	88.110	ENSPMEG00000018422	larsb	67	88.110	Poecilia_mexicana
ENSDARG00000019280	larsb	100	87.860	ENSPREG00000005668	larsb	67	87.860	Poecilia_reticulata
ENSDARG00000019280	larsb	99	77.820	ENSPPYG00000015908	LARS	66	77.820	Pongo_abelii
ENSDARG00000019280	larsb	91	64.118	ENSPCAG00000005621	LARS	67	64.665	Procavia_capensis
ENSDARG00000019280	larsb	100	77.472	ENSPCOG00000019325	LARS	67	77.472	Propithecus_coquereli
ENSDARG00000019280	larsb	99	72.764	ENSPVAG00000011237	LARS	70	71.465	Pteropus_vampyrus
ENSDARG00000019280	larsb	100	87.985	ENSPNYG00000015254	larsb	68	87.985	Pundamilia_nyererei
ENSDARG00000019280	larsb	100	87.860	ENSPNAG00000027191	larsb	68	87.860	Pygocentrus_nattereri
ENSDARG00000019280	larsb	100	77.472	ENSRNOG00000018304	Lars	68	77.472	Rattus_norvegicus
ENSDARG00000019280	larsb	92	81.284	ENSRBIG00000043198	LARS	69	81.088	Rhinopithecus_bieti
ENSDARG00000019280	larsb	58	75.744	ENSRROG00000019939	-	99	75.744	Rhinopithecus_roxellana
ENSDARG00000019280	larsb	86	44.242	YPL160W	CDC60	64	44.242	Saccharomyces_cerevisiae
ENSDARG00000019280	larsb	100	80.350	ENSSBOG00000026661	LARS	72	80.350	Saimiri_boliviensis_boliviensis
ENSDARG00000019280	larsb	100	79.625	ENSSHAG00000006084	LARS	68	79.625	Sarcophilus_harrisii
ENSDARG00000019280	larsb	95	87.105	ENSSFOG00015018117	larsb	60	87.105	Scleropages_formosus
ENSDARG00000019280	larsb	82	88.737	ENSSMAG00000004078	larsb	61	88.737	Scophthalmus_maximus
ENSDARG00000019280	larsb	100	88.110	ENSSDUG00000021142	larsb	67	88.110	Seriola_dumerili
ENSDARG00000019280	larsb	100	88.110	ENSSLDG00000007054	larsb	67	88.110	Seriola_lalandi_dorsalis
ENSDARG00000019280	larsb	89	64.874	ENSSARG00000013481	LARS	60	64.874	Sorex_araneus
ENSDARG00000019280	larsb	100	80.601	ENSSPUG00000013805	LARS	68	80.601	Sphenodon_punctatus
ENSDARG00000019280	larsb	100	88.360	ENSSPAG00000012124	larsb	67	88.360	Stegastes_partitus
ENSDARG00000019280	larsb	100	74.844	ENSSSCG00000014411	LARS	67	74.844	Sus_scrofa
ENSDARG00000019280	larsb	100	80.476	ENSTGUG00000000092	-	68	80.476	Taeniopygia_guttata
ENSDARG00000019280	larsb	100	84.481	ENSTRUG00000005358	larsb	67	84.481	Takifugu_rubripes
ENSDARG00000019280	larsb	100	83.791	ENSTNIG00000018214	larsb	68	83.791	Tetraodon_nigroviridis
ENSDARG00000019280	larsb	100	68.461	ENSTBEG00000003757	LARS	71	68.461	Tupaia_belangeri
ENSDARG00000019280	larsb	100	74.093	ENSTTRG00000016712	LARS	68	74.093	Tursiops_truncatus
ENSDARG00000019280	larsb	92	81.421	ENSUAMG00000019907	LARS	66	81.421	Ursus_americanus
ENSDARG00000019280	larsb	100	79.975	ENSUMAG00000010585	LARS	68	79.975	Ursus_maritimus
ENSDARG00000019280	larsb	88	81.651	ENSVPAG00000000557	LARS	60	81.651	Vicugna_pacos
ENSDARG00000019280	larsb	100	79.975	ENSVVUG00000021124	LARS	68	79.975	Vulpes_vulpes
ENSDARG00000019280	larsb	100	81.125	ENSXETG00000002320	lars	68	81.125	Xenopus_tropicalis
ENSDARG00000019280	larsb	100	87.735	ENSXMAG00000001454	larsb	68	87.735	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0002161	aminoacyl-tRNA editing activity	-	IEA	Function
GO:0004812	aminoacyl-tRNA ligase activity	-	IEA	Function
GO:0004823	leucine-tRNA ligase activity	21873635.	IBA	Function
GO:0004823	leucine-tRNA ligase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0006418	tRNA aminoacylation for protein translation	-	IEA	Process
GO:0006429	leucyl-tRNA aminoacylation	21873635.	IBA	Process
GO:0006429	leucyl-tRNA aminoacylation	-	IEA	Process