EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000019842 (Gene tree)
Gene ID: 327627
Gene Symbol: cnot3b
Alias: cnot3|wu:fi20g07|zgc:55934
Full Name: CCR4-NOT transcription complex%2C subunit 3b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 43122 bases
Position: chr19:10252052-10295173
Accession: ZDB-GENE-030131-5838
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000025243	Not3	PF04065.15	3.8e-96	1	1
ENSDARP00000121075	Not3	PF04065.15	3.8e-96	1	1
ENSDARP00000025243	NOT2_3_5	PF04153.18	2.1e-39	1	1
ENSDARP00000121075	NOT2_3_5	PF04153.18	2.1e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000027316	-	6447	-	ENSDARP00000025243	885 (aa)	-	Q1LUD8
ENSDART00000136697	-	3411	XM_009294029	ENSDARP00000121075	885 (aa)	XP_009292304	Q1LUD8

Gene Model

Click here to download ENSDARG00000019842's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000019842's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000019842	cnot3b	69	88.235	ENSG00000088038	CNOT3	100	93.814	Homo_sapiens
ENSDARG00000019842	cnot3b	56	94.444	ENSAPOG00000015499	CNOT3	84	94.444	Acanthochromis_polyacanthus
ENSDARG00000019842	cnot3b	57	89.892	ENSAPOG00000015002	cnot3b	76	89.892	Acanthochromis_polyacanthus
ENSDARG00000019842	cnot3b	69	88.562	ENSAMEG00000004528	CNOT3	88	88.562	Ailuropoda_melanoleuca
ENSDARG00000019842	cnot3b	78	94.444	ENSACIG00000006635	cnot3a	93	94.444	Amphilophus_citrinellus
ENSDARG00000019842	cnot3b	52	91.518	ENSACIG00000003652	cnot3b	95	91.518	Amphilophus_citrinellus
ENSDARG00000019842	cnot3b	97	65.740	ENSAOCG00000018385	-	95	78.829	Amphiprion_ocellaris
ENSDARG00000019842	cnot3b	97	70.079	ENSAPEG00000002640	cnot3b	95	91.480	Amphiprion_percula
ENSDARG00000019842	cnot3b	100	70.469	ENSATEG00000015777	cnot3b	100	71.581	Anabas_testudineus
ENSDARG00000019842	cnot3b	73	88.274	ENSACAG00000016085	CNOT3	99	88.235	Anolis_carolinensis
ENSDARG00000019842	cnot3b	70	88.235	ENSANAG00000025756	CNOT3	88	88.235	Aotus_nancymaae
ENSDARG00000019842	cnot3b	100	71.044	ENSACLG00000016702	cnot3b	100	70.054	Astatotilapia_calliptera
ENSDARG00000019842	cnot3b	100	76.554	ENSAMXG00000009447	cnot3b	98	94.054	Astyanax_mexicanus
ENSDARG00000019842	cnot3b	100	65.368	ENSAMXG00000012359	cnot3a	60	61.842	Astyanax_mexicanus
ENSDARG00000019842	cnot3b	70	88.235	ENSBTAG00000014900	CNOT3	97	88.235	Bos_taurus
ENSDARG00000019842	cnot3b	69	88.235	ENSCJAG00000001094	CNOT3	87	88.235	Callithrix_jacchus
ENSDARG00000019842	cnot3b	69	88.235	ENSCAFG00000002699	CNOT3	97	88.235	Canis_familiaris
ENSDARG00000019842	cnot3b	69	88.235	ENSCAFG00020018359	CNOT3	97	88.235	Canis_lupus_dingo
ENSDARG00000019842	cnot3b	70	86.230	ENSCHIG00000015302	CNOT3	89	86.230	Capra_hircus
ENSDARG00000019842	cnot3b	69	88.235	ENSTSYG00000008058	CNOT3	88	88.235	Carlito_syrichta
ENSDARG00000019842	cnot3b	69	88.235	ENSCAPG00000009533	CNOT3	97	88.235	Cavia_aperea
ENSDARG00000019842	cnot3b	77	88.235	ENSCPOG00000020741	CNOT3	96	88.235	Cavia_porcellus
ENSDARG00000019842	cnot3b	70	88.235	ENSCCAG00000036290	CNOT3	88	88.235	Cebus_capucinus
ENSDARG00000019842	cnot3b	74	88.235	ENSCATG00000030324	CNOT3	97	88.235	Cercocebus_atys
ENSDARG00000019842	cnot3b	94	66.886	ENSCLAG00000003302	CNOT3	100	86.585	Chinchilla_lanigera
ENSDARG00000019842	cnot3b	74	88.235	ENSCSAG00000001900	CNOT3	88	88.235	Chlorocebus_sabaeus
ENSDARG00000019842	cnot3b	70	89.251	ENSCPBG00000011655	CNOT3	94	89.216	Chrysemys_picta_bellii
ENSDARG00000019842	cnot3b	64	60.498	ENSCING00000000293	-	75	66.534	Ciona_intestinalis
ENSDARG00000019842	cnot3b	70	87.948	ENSCANG00000013408	CNOT3	87	88.235	Colobus_angolensis_palliatus
ENSDARG00000019842	cnot3b	77	88.562	ENSCGRG00001000855	Cnot3	88	88.562	Cricetulus_griseus_chok1gshd
ENSDARG00000019842	cnot3b	100	65.714	ENSCSEG00000003574	cnot3a	100	68.017	Cynoglossus_semilaevis
ENSDARG00000019842	cnot3b	100	61.628	ENSCSEG00000016892	cnot3b	78	80.782	Cynoglossus_semilaevis
ENSDARG00000019842	cnot3b	100	68.108	ENSCVAG00000022122	cnot3b	100	67.896	Cyprinodon_variegatus
ENSDARG00000019842	cnot3b	69	88.235	ENSDNOG00000045972	CNOT3	89	88.235	Dasypus_novemcinctus
ENSDARG00000019842	cnot3b	69	88.235	ENSDORG00000008021	Cnot3	100	81.609	Dipodomys_ordii
ENSDARG00000019842	cnot3b	51	100.000	ENSETEG00000006305	CNOT3	63	100.000	Echinops_telfairi
ENSDARG00000019842	cnot3b	73	70.684	ENSEBUG00000010437	cnot3a	89	67.427	Eptatretus_burgeri
ENSDARG00000019842	cnot3b	69	88.235	ENSEASG00005021591	CNOT3	97	88.235	Equus_asinus_asinus
ENSDARG00000019842	cnot3b	69	88.235	ENSECAG00000023181	CNOT3	97	88.235	Equus_caballus
ENSDARG00000019842	cnot3b	100	64.034	ENSELUG00000014743	cnot3a	92	81.459	Esox_lucius
ENSDARG00000019842	cnot3b	100	69.386	ENSELUG00000000953	cnot3b	100	70.085	Esox_lucius
ENSDARG00000019842	cnot3b	76	78.202	ENSFCAG00000014042	CNOT3	97	88.235	Felis_catus
ENSDARG00000019842	cnot3b	62	94.017	ENSFHEG00000023166	cnot3a	93	94.017	Fundulus_heteroclitus
ENSDARG00000019842	cnot3b	56	59.884	ENSGAFG00000013094	cnot3a	57	62.597	Gambusia_affinis
ENSDARG00000019842	cnot3b	100	69.848	ENSGAFG00000003459	cnot3b	100	68.649	Gambusia_affinis
ENSDARG00000019842	cnot3b	73	82.958	ENSGAGG00000012677	CNOT3	96	87.215	Gopherus_agassizii
ENSDARG00000019842	cnot3b	70	88.235	ENSGGOG00000012996	CNOT3	91	88.235	Gorilla_gorilla
ENSDARG00000019842	cnot3b	99	65.147	ENSHBUG00000019699	cnot3b	99	62.636	Haplochromis_burtoni
ENSDARG00000019842	cnot3b	69	88.235	ENSHGLG00000008821	CNOT3	100	81.609	Heterocephalus_glaber_female
ENSDARG00000019842	cnot3b	61	83.908	ENSHGLG00100006181	CNOT3	100	81.609	Heterocephalus_glaber_male
ENSDARG00000019842	cnot3b	58	86.574	ENSHCOG00000020968	cnot3a	54	52.896	Hippocampus_comes
ENSDARG00000019842	cnot3b	100	61.878	ENSIPUG00000000167	cnot3	94	92.308	Ictalurus_punctatus
ENSDARG00000019842	cnot3b	100	72.486	ENSIPUG00000009046	cnot3b	100	71.823	Ictalurus_punctatus
ENSDARG00000019842	cnot3b	69	88.235	ENSSTOG00000028248	CNOT3	88	88.235	Ictidomys_tridecemlineatus
ENSDARG00000019842	cnot3b	89	66.885	ENSJJAG00000014594	Cnot3	100	81.609	Jaculus_jaculus
ENSDARG00000019842	cnot3b	100	66.848	ENSKMAG00000004863	cnot3a	70	87.786	Kryptolebias_marmoratus
ENSDARG00000019842	cnot3b	100	69.697	ENSKMAG00000018723	cnot3b	100	70.531	Kryptolebias_marmoratus
ENSDARG00000019842	cnot3b	53	89.844	ENSLBEG00000017296	cnot3a	65	89.844	Labrus_bergylta
ENSDARG00000019842	cnot3b	96	70.661	ENSLBEG00000018278	cnot3b	72	89.508	Labrus_bergylta
ENSDARG00000019842	cnot3b	70	88.889	ENSLACG00000009742	CNOT3	90	88.889	Latimeria_chalumnae
ENSDARG00000019842	cnot3b	62	93.651	ENSLOCG00000000005	cnot3b	80	93.651	Lepisosteus_oculatus
ENSDARG00000019842	cnot3b	69	87.296	ENSLAFG00000022133	CNOT3	97	87.296	Loxodonta_africana
ENSDARG00000019842	cnot3b	74	88.235	ENSMFAG00000040073	CNOT3	88	88.235	Macaca_fascicularis
ENSDARG00000019842	cnot3b	74	88.235	ENSMNEG00000036750	CNOT3	88	88.235	Macaca_nemestrina
ENSDARG00000019842	cnot3b	74	88.235	ENSMLEG00000036579	CNOT3	88	88.235	Mandrillus_leucophaeus
ENSDARG00000019842	cnot3b	100	69.840	ENSMAMG00000019357	cnot3b	100	71.016	Mastacembelus_armatus
ENSDARG00000019842	cnot3b	100	71.274	ENSMZEG00005002466	cnot3b	100	69.556	Maylandia_zebra
ENSDARG00000019842	cnot3b	77	88.562	ENSMAUG00000014996	Cnot3	88	88.562	Mesocricetus_auratus
ENSDARG00000019842	cnot3b	69	88.235	ENSMICG00000002370	CNOT3	97	88.235	Microcebus_murinus
ENSDARG00000019842	cnot3b	68	90.171	ENSMMOG00000013086	cnot3b	95	87.449	Mola_mola
ENSDARG00000019842	cnot3b	78	90.171	ENSMMOG00000016446	cnot3a	100	66.450	Mola_mola
ENSDARG00000019842	cnot3b	61	88.889	ENSMODG00000004066	CNOT3	87	88.889	Monodelphis_domestica
ENSDARG00000019842	cnot3b	60	84.868	ENSMALG00000004936	cnot3b	95	86.532	Monopterus_albus
ENSDARG00000019842	cnot3b	72	88.562	MGP_CAROLIEiJ_G0029095	Cnot3	100	95.000	Mus_caroli
ENSDARG00000019842	cnot3b	72	88.562	ENSMUSG00000035632	Cnot3	100	95.000	Mus_musculus
ENSDARG00000019842	cnot3b	77	88.562	MGP_PahariEiJ_G0020964	Cnot3	100	95.000	Mus_pahari
ENSDARG00000019842	cnot3b	72	88.562	MGP_SPRETEiJ_G0030148	Cnot3	100	95.000	Mus_spretus
ENSDARG00000019842	cnot3b	70	88.235	ENSMPUG00000010352	CNOT3	97	88.235	Mustela_putorius_furo
ENSDARG00000019842	cnot3b	72	88.235	ENSNGAG00000013266	Cnot3	91	88.235	Nannospalax_galili
ENSDARG00000019842	cnot3b	89	73.854	ENSNBRG00000003336	cnot3b	97	85.374	Neolamprologus_brichardi
ENSDARG00000019842	cnot3b	69	88.235	ENSNLEG00000006272	CNOT3	97	88.235	Nomascus_leucogenys
ENSDARG00000019842	cnot3b	69	88.235	ENSODEG00000000705	CNOT3	100	89.873	Octodon_degus
ENSDARG00000019842	cnot3b	100	71.013	ENSONIG00000007047	cnot3b	100	70.499	Oreochromis_niloticus
ENSDARG00000019842	cnot3b	69	88.235	ENSOCUG00000007691	CNOT3	88	88.235	Oryctolagus_cuniculus
ENSDARG00000019842	cnot3b	100	68.108	ENSORLG00015019021	cnot3b	57	64.313	Oryzias_latipes_hsok
ENSDARG00000019842	cnot3b	88	90.000	ENSOMEG00000010309	cnot3a	92	90.119	Oryzias_melastigma
ENSDARG00000019842	cnot3b	100	69.902	ENSOMEG00000015557	cnot3b	100	68.689	Oryzias_melastigma
ENSDARG00000019842	cnot3b	69	88.235	ENSOGAG00000006945	CNOT3	97	88.235	Otolemur_garnettii
ENSDARG00000019842	cnot3b	70	88.235	ENSPPAG00000002748	CNOT3	91	88.235	Pan_paniscus
ENSDARG00000019842	cnot3b	76	78.202	ENSPPRG00000011705	CNOT3	97	88.235	Panthera_pardus
ENSDARG00000019842	cnot3b	61	88.926	ENSPTIG00000008781	CNOT3	96	88.926	Panthera_tigris_altaica
ENSDARG00000019842	cnot3b	70	88.235	ENSPTRG00000011444	CNOT3	91	88.235	Pan_troglodytes
ENSDARG00000019842	cnot3b	70	88.235	ENSPTRG00000046717	-	91	88.235	Pan_troglodytes
ENSDARG00000019842	cnot3b	74	88.235	ENSPANG00000009375	CNOT3	88	88.235	Papio_anubis
ENSDARG00000019842	cnot3b	69	96.581	ENSPKIG00000015967	-	93	96.581	Paramormyrops_kingsleyae
ENSDARG00000019842	cnot3b	98	63.677	ENSPMGG00000022539	cnot3b	55	57.234	Periophthalmus_magnuspinnatus
ENSDARG00000019842	cnot3b	78	88.562	ENSPEMG00000024185	Cnot3	88	88.562	Peromyscus_maniculatus_bairdii
ENSDARG00000019842	cnot3b	70	88.562	ENSPCIG00000023018	CNOT3	96	90.157	Phascolarctos_cinereus
ENSDARG00000019842	cnot3b	100	70.217	ENSPFOG00000007168	cnot3b	100	69.717	Poecilia_formosa
ENSDARG00000019842	cnot3b	76	88.333	ENSPFOG00000008693	cnot3a	89	88.333	Poecilia_formosa
ENSDARG00000019842	cnot3b	100	70.217	ENSPLAG00000013457	cnot3b	100	69.717	Poecilia_latipinna
ENSDARG00000019842	cnot3b	100	70.607	ENSPMEG00000010184	cnot3b	100	69.935	Poecilia_mexicana
ENSDARG00000019842	cnot3b	64	94.043	ENSPREG00000007592	cnot3a	95	91.093	Poecilia_reticulata
ENSDARG00000019842	cnot3b	99	67.517	ENSPREG00000000662	cnot3b	97	66.851	Poecilia_reticulata
ENSDARG00000019842	cnot3b	69	87.908	ENSPPYG00000010372	CNOT3	91	87.908	Pongo_abelii
ENSDARG00000019842	cnot3b	54	94.915	ENSPCAG00000011999	CNOT3	56	94.915	Procavia_capensis
ENSDARG00000019842	cnot3b	69	88.235	ENSPCOG00000017673	CNOT3	91	88.235	Propithecus_coquereli
ENSDARG00000019842	cnot3b	70	87.255	ENSPVAG00000015564	CNOT3	88	87.255	Pteropus_vampyrus
ENSDARG00000019842	cnot3b	99	65.652	ENSPNYG00000003358	cnot3b	99	63.141	Pundamilia_nyererei
ENSDARG00000019842	cnot3b	100	78.438	ENSPNAG00000027459	cnot3b	100	77.802	Pygocentrus_nattereri
ENSDARG00000019842	cnot3b	76	94.017	ENSPNAG00000017679	cnot3a	94	94.017	Pygocentrus_nattereri
ENSDARG00000019842	cnot3b	77	88.562	ENSRNOG00000053234	Cnot3	88	88.562	Rattus_norvegicus
ENSDARG00000019842	cnot3b	74	88.235	ENSRBIG00000031025	CNOT3	97	88.235	Rhinopithecus_bieti
ENSDARG00000019842	cnot3b	74	88.235	ENSRROG00000003872	CNOT3	97	88.235	Rhinopithecus_roxellana
ENSDARG00000019842	cnot3b	70	88.235	ENSSBOG00000030268	CNOT3	87	88.235	Saimiri_boliviensis_boliviensis
ENSDARG00000019842	cnot3b	100	69.762	ENSSFOG00015019203	-	100	70.569	Scleropages_formosus
ENSDARG00000019842	cnot3b	100	70.939	ENSSFOG00015000248	cnot3	100	72.647	Scleropages_formosus
ENSDARG00000019842	cnot3b	51	64.240	ENSSMAG00000013235	cnot3a	58	63.178	Scophthalmus_maximus
ENSDARG00000019842	cnot3b	100	71.383	ENSSDUG00000003428	cnot3b	100	71.444	Seriola_dumerili
ENSDARG00000019842	cnot3b	77	94.872	ENSSDUG00000008181	cnot3a	93	94.872	Seriola_dumerili
ENSDARG00000019842	cnot3b	100	71.489	ENSSLDG00000014376	cnot3b	100	71.550	Seriola_lalandi_dorsalis
ENSDARG00000019842	cnot3b	79	80.392	ENSSPUG00000008510	CNOT3	99	88.889	Sphenodon_punctatus
ENSDARG00000019842	cnot3b	100	71.612	ENSSPAG00000001429	cnot3b	100	71.398	Stegastes_partitus
ENSDARG00000019842	cnot3b	84	89.844	ENSSPAG00000003858	cnot3a	88	89.844	Stegastes_partitus
ENSDARG00000019842	cnot3b	69	88.235	ENSSSCG00000003264	CNOT3	88	88.235	Sus_scrofa
ENSDARG00000019842	cnot3b	100	88.325	ENSTRUG00000007248	cnot3b	92	88.325	Takifugu_rubripes
ENSDARG00000019842	cnot3b	69	88.562	ENSUAMG00000005234	CNOT3	97	88.562	Ursus_americanus
ENSDARG00000019842	cnot3b	59	89.247	ENSUMAG00000010934	CNOT3	98	89.247	Ursus_maritimus
ENSDARG00000019842	cnot3b	69	88.235	ENSVVUG00000008239	CNOT3	96	88.235	Vulpes_vulpes
ENSDARG00000019842	cnot3b	80	85.897	ENSXETG00000003166	cnot3	98	87.138	Xenopus_tropicalis
ENSDARG00000019842	cnot3b	100	63.787	ENSXCOG00000019460	cnot3a	91	93.590	Xiphophorus_couchianus
ENSDARG00000019842	cnot3b	96	68.772	ENSXCOG00000018976	cnot3b	99	68.161	Xiphophorus_couchianus
ENSDARG00000019842	cnot3b	100	69.598	ENSXMAG00000014176	cnot3b	100	68.608	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0017148	negative regulation of translation	21873635.	IBA	Process
GO:0030015	CCR4-NOT core complex	21873635.	IBA	Component
GO:0030015	CCR4-NOT core complex	-	IEA	Component