EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000020079 (Gene tree)
Gene ID: 492463
Gene Symbol: neil3
Alias: zgc:103553
Full Name: nei-like DNA glycosylase 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 13582 bases
Position: chr14:36414856-36428437
Accession: ZDB-GENE-041114-18
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000008228	zf-RanBP	PF00641.18	5.3e-08	1	1
ENSDARP00000109273	zf-RanBP	PF00641.18	5.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000015761	-	1903	-	ENSDARP00000008228	550 (aa)	-	F1R7V7
ENSDART00000123343	-	1999	XM_005157318	ENSDARP00000109273	568 (aa)	XP_005157375	F1Q570
ENSDART00000142930	-	825	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000020079's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000020079's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000020079	neil3	100	51.060	ENSG00000109674	NEIL3	100	51.060	Homo_sapiens
ENSDARG00000020079	neil3	100	62.738	ENSACIG00000002265	neil3	100	62.738	Amphilophus_citrinellus
ENSDARG00000020079	neil3	100	63.158	ENSATEG00000004193	neil3	100	63.158	Anabas_testudineus
ENSDARG00000020079	neil3	100	46.078	ENSANAG00000026464	NEIL3	100	46.078	Aotus_nancymaae
ENSDARG00000020079	neil3	100	61.473	ENSACLG00000011270	neil3	100	61.473	Astatotilapia_calliptera
ENSDARG00000020079	neil3	100	51.550	ENSBTAG00000005825	NEIL3	100	51.713	Bos_taurus
ENSDARG00000020079	neil3	100	50.817	ENSCJAG00000005464	NEIL3	100	50.817	Callithrix_jacchus
ENSDARG00000020079	neil3	100	51.466	ENSCHIG00000009157	NEIL3	100	51.466	Capra_hircus
ENSDARG00000020079	neil3	100	51.236	ENSTSYG00000014680	NEIL3	100	51.236	Carlito_syrichta
ENSDARG00000020079	neil3	88	52.591	ENSCAPG00000006333	NEIL3	98	52.591	Cavia_aperea
ENSDARG00000020079	neil3	100	50.820	ENSCPOG00000003297	NEIL3	100	50.820	Cavia_porcellus
ENSDARG00000020079	neil3	100	50.327	ENSCCAG00000018838	NEIL3	100	50.327	Cebus_capucinus
ENSDARG00000020079	neil3	100	50.645	ENSCLAG00000015661	NEIL3	100	50.645	Chinchilla_lanigera
ENSDARG00000020079	neil3	100	50.987	ENSCSAG00000003064	NEIL3	100	50.987	Chlorocebus_sabaeus
ENSDARG00000020079	neil3	75	68.627	ENSCHOG00000008101	NEIL3	74	68.627	Choloepus_hoffmanni
ENSDARG00000020079	neil3	100	50.492	ENSCANG00000043622	NEIL3	100	50.492	Colobus_angolensis_palliatus
ENSDARG00000020079	neil3	100	60.788	ENSCSEG00000003828	neil3	99	60.788	Cynoglossus_semilaevis
ENSDARG00000020079	neil3	89	53.346	ENSDNOG00000012236	NEIL3	100	53.346	Dasypus_novemcinctus
ENSDARG00000020079	neil3	100	51.870	ENSEASG00005022272	NEIL3	100	51.870	Equus_asinus_asinus
ENSDARG00000020079	neil3	100	51.707	ENSECAG00000009121	NEIL3	100	51.707	Equus_caballus
ENSDARG00000020079	neil3	77	44.828	ENSEEUG00000010848	NEIL3	100	44.828	Erinaceus_europaeus
ENSDARG00000020079	neil3	100	53.897	ENSFCAG00000004956	NEIL3	100	53.897	Felis_catus
ENSDARG00000020079	neil3	100	60.307	ENSHBUG00000023848	neil3	100	60.307	Haplochromis_burtoni
ENSDARG00000020079	neil3	89	52.772	ENSHGLG00000006643	NEIL3	100	52.772	Heterocephalus_glaber_female
ENSDARG00000020079	neil3	89	52.772	ENSHGLG00100006959	NEIL3	100	52.772	Heterocephalus_glaber_male
ENSDARG00000020079	neil3	100	50.407	ENSSTOG00000016245	NEIL3	100	50.407	Ictidomys_tridecemlineatus
ENSDARG00000020079	neil3	64	53.435	ENSLACG00000000308	NEIL3	99	53.435	Latimeria_chalumnae
ENSDARG00000020079	neil3	100	51.227	ENSMFAG00000002547	NEIL3	100	51.227	Macaca_fascicularis
ENSDARG00000020079	neil3	100	51.227	ENSMMUG00000007394	NEIL3	100	51.227	Macaca_mulatta
ENSDARG00000020079	neil3	100	51.236	ENSMNEG00000036177	NEIL3	100	51.236	Macaca_nemestrina
ENSDARG00000020079	neil3	100	60.714	ENSMAMG00000017052	neil3	100	61.130	Mastacembelus_armatus
ENSDARG00000020079	neil3	100	60.959	ENSMZEG00005001680	neil3	100	60.959	Maylandia_zebra
ENSDARG00000020079	neil3	89	48.858	ENSMODG00000003813	NEIL3	99	48.858	Monodelphis_domestica
ENSDARG00000020079	neil3	100	51.303	MGP_CAROLIEiJ_G0031052	Neil3	100	51.303	Mus_caroli
ENSDARG00000020079	neil3	100	50.651	ENSMUSG00000039396	Neil3	100	50.651	Mus_musculus
ENSDARG00000020079	neil3	100	50.977	MGP_PahariEiJ_G0021518	Neil3	100	50.977	Mus_pahari
ENSDARG00000020079	neil3	100	50.977	MGP_SPRETEiJ_G0032167	Neil3	100	50.977	Mus_spretus
ENSDARG00000020079	neil3	100	61.622	ENSNBRG00000013229	neil3	100	61.622	Neolamprologus_brichardi
ENSDARG00000020079	neil3	100	50.327	ENSNLEG00000016818	NEIL3	100	50.327	Nomascus_leucogenys
ENSDARG00000020079	neil3	100	51.797	ENSODEG00000004102	NEIL3	100	51.797	Octodon_degus
ENSDARG00000020079	neil3	100	60.988	ENSONIG00000001176	neil3	100	60.988	Oreochromis_niloticus
ENSDARG00000020079	neil3	99	50.329	ENSOCUG00000001040	NEIL3	99	50.329	Oryctolagus_cuniculus
ENSDARG00000020079	neil3	100	56.208	ENSOMEG00000014798	neil3	100	56.208	Oryzias_melastigma
ENSDARG00000020079	neil3	100	50.326	ENSOGAG00000012624	NEIL3	100	50.326	Otolemur_garnettii
ENSDARG00000020079	neil3	95	53.025	ENSOARG00000006852	NEIL3	99	52.847	Ovis_aries
ENSDARG00000020079	neil3	100	51.993	ENSPPAG00000035318	NEIL3	100	51.993	Pan_paniscus
ENSDARG00000020079	neil3	100	53.897	ENSPPRG00000003958	NEIL3	100	53.897	Panthera_pardus
ENSDARG00000020079	neil3	100	54.063	ENSPTIG00000012966	NEIL3	100	54.063	Panthera_tigris_altaica
ENSDARG00000020079	neil3	100	50.651	ENSPTRG00000016617	NEIL3	100	50.651	Pan_troglodytes
ENSDARG00000020079	neil3	100	51.067	ENSPANG00000014727	NEIL3	100	52.099	Papio_anubis
ENSDARG00000020079	neil3	100	60.449	ENSPFOG00000018858	neil3	100	60.449	Poecilia_formosa
ENSDARG00000020079	neil3	100	59.758	ENSPLAG00000010685	neil3	100	59.758	Poecilia_latipinna
ENSDARG00000020079	neil3	100	60.276	ENSPMEG00000013971	neil3	100	60.276	Poecilia_mexicana
ENSDARG00000020079	neil3	100	61.400	ENSPREG00000009841	neil3	100	61.400	Poecilia_reticulata
ENSDARG00000020079	neil3	70	66.667	ENSPCAG00000006386	NEIL3	78	66.667	Procavia_capensis
ENSDARG00000020079	neil3	75	71.287	ENSPCOG00000010888	NEIL3	92	71.287	Propithecus_coquereli
ENSDARG00000020079	neil3	99	52.365	ENSPVAG00000002255	NEIL3	99	52.365	Pteropus_vampyrus
ENSDARG00000020079	neil3	100	61.780	ENSPNYG00000021276	neil3	100	61.780	Pundamilia_nyererei
ENSDARG00000020079	neil3	98	61.279	ENSPNAG00000019983	neil3	100	61.649	Pygocentrus_nattereri
ENSDARG00000020079	neil3	100	51.555	ENSRNOG00000011688	Neil3	100	51.555	Rattus_norvegicus
ENSDARG00000020079	neil3	100	51.672	ENSRBIG00000023002	NEIL3	100	51.672	Rhinopithecus_bieti
ENSDARG00000020079	neil3	100	51.839	ENSRROG00000000069	NEIL3	100	51.839	Rhinopithecus_roxellana
ENSDARG00000020079	neil3	100	50.573	ENSSBOG00000032601	NEIL3	100	50.573	Saimiri_boliviensis_boliviensis
ENSDARG00000020079	neil3	100	52.174	ENSSHAG00000007680	NEIL3	100	52.174	Sarcophilus_harrisii
ENSDARG00000020079	neil3	100	61.473	ENSSMAG00000009621	neil3	100	61.644	Scophthalmus_maximus
ENSDARG00000020079	neil3	100	52.824	ENSSSCG00000015771	NEIL3	100	52.824	Sus_scrofa
ENSDARG00000020079	neil3	100	52.373	ENSTTRG00000013224	NEIL3	100	52.537	Tursiops_truncatus
ENSDARG00000020079	neil3	100	47.496	ENSVPAG00000005020	NEIL3	100	47.496	Vicugna_pacos
ENSDARG00000020079	neil3	88	60.896	ENSXCOG00000014831	neil3	95	60.896	Xiphophorus_couchianus
ENSDARG00000020079	neil3	100	58.935	ENSXMAG00000028638	neil3	100	58.935	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003684	damaged DNA binding	-	IEA	Function
GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	21873635.	IBA	Function
GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	-	IEA	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004519	endonuclease activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006284	base-excision repair	21873635.	IBA	Process
GO:0006284	base-excision repair	-	IEA	Process
GO:0006289	nucleotide-excision repair	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	-	IEA	Function
GO:0019104	DNA N-glycosylase activity	21873635.	IBA	Function
GO:0046872	metal ion binding	-	IEA	Function