EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000020217 (Gene tree)
Gene ID: 30203
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 5838 bases
Position: chr3:40289418-40295255
Accession: ZDB-GENE-990415-180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000007713	zf-CCCH	PF00642.24	5.1e-20	1	2
ENSDARP00000007713	zf-CCCH	PF00642.24	5.1e-20	2	2
ENSDARP00000007713	zf-CCHC	PF00098.23	7e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000017304	-	1874	XM_021469299	ENSDARP00000007713	271 (aa)	XP_021324974	F1Q949

Gene Model

Click here to download ENSDARG00000020217's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000020217's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000020217	cpsf4	100	85.240	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSDARG00000020217	cpsf4	68	73.770	ENSAPOG00000004921	cpsf4	100	73.770	Acanthochromis_polyacanthus
ENSDARG00000020217	cpsf4	100	85.240	ENSAMEG00000006252	CPSF4	100	85.240	Ailuropoda_melanoleuca
ENSDARG00000020217	cpsf4	100	80.812	ENSACIG00000009248	cpsf4	100	79.705	Amphilophus_citrinellus
ENSDARG00000020217	cpsf4	100	84.133	ENSAOCG00000019616	cpsf4	100	84.133	Amphiprion_ocellaris
ENSDARG00000020217	cpsf4	100	84.133	ENSAPEG00000011679	cpsf4	100	84.133	Amphiprion_percula
ENSDARG00000020217	cpsf4	100	84.133	ENSATEG00000007010	cpsf4	100	84.133	Anabas_testudineus
ENSDARG00000020217	cpsf4	100	83.764	ENSACAG00000012941	CPSF4	89	83.764	Anolis_carolinensis
ENSDARG00000020217	cpsf4	100	85.240	ENSANAG00000021360	CPSF4	100	85.240	Aotus_nancymaae
ENSDARG00000020217	cpsf4	100	84.502	ENSACLG00000010374	cpsf4	100	84.502	Astatotilapia_calliptera
ENSDARG00000020217	cpsf4	100	88.930	ENSAMXG00000031647	cpsf4	100	88.561	Astyanax_mexicanus
ENSDARG00000020217	cpsf4	100	79.336	ENSBTAG00000002090	CPSF4	100	78.967	Bos_taurus
ENSDARG00000020217	cpsf4	100	85.240	ENSCJAG00000015826	CPSF4	100	85.240	Callithrix_jacchus
ENSDARG00000020217	cpsf4	100	85.240	ENSCAFG00000015036	CPSF4	99	88.024	Canis_familiaris
ENSDARG00000020217	cpsf4	100	80.443	ENSCAFG00020014462	CPSF4	100	80.443	Canis_lupus_dingo
ENSDARG00000020217	cpsf4	100	85.240	ENSCHIG00000014313	CPSF4	100	85.240	Capra_hircus
ENSDARG00000020217	cpsf4	100	80.074	ENSTSYG00000005712	-	100	79.705	Carlito_syrichta
ENSDARG00000020217	cpsf4	89	73.251	ENSTSYG00000008195	-	99	73.016	Carlito_syrichta
ENSDARG00000020217	cpsf4	100	72.794	ENSTSYG00000014604	-	100	72.426	Carlito_syrichta
ENSDARG00000020217	cpsf4	83	83.036	ENSCAPG00000013881	CPSF4	88	83.036	Cavia_aperea
ENSDARG00000020217	cpsf4	100	79.705	ENSCPOG00000001783	CPSF4	100	79.336	Cavia_porcellus
ENSDARG00000020217	cpsf4	100	85.240	ENSCCAG00000028291	CPSF4	100	85.240	Cebus_capucinus
ENSDARG00000020217	cpsf4	100	85.240	ENSCATG00000038440	CPSF4	100	85.240	Cercocebus_atys
ENSDARG00000020217	cpsf4	100	85.240	ENSCLAG00000007050	CPSF4	100	85.240	Chinchilla_lanigera
ENSDARG00000020217	cpsf4	100	85.240	ENSCSAG00000017795	CPSF4	100	85.240	Chlorocebus_sabaeus
ENSDARG00000020217	cpsf4	80	84.862	ENSCPBG00000020869	CPSF4	100	84.862	Chrysemys_picta_bellii
ENSDARG00000020217	cpsf4	61	80.000	ENSCPBG00000010269	-	100	79.518	Chrysemys_picta_bellii
ENSDARG00000020217	cpsf4	97	54.373	ENSCING00000021080	-	97	53.817	Ciona_intestinalis
ENSDARG00000020217	cpsf4	96	53.004	ENSCSAVG00000011469	-	97	52.297	Ciona_savignyi
ENSDARG00000020217	cpsf4	100	85.240	ENSCANG00000019384	CPSF4	100	85.240	Colobus_angolensis_palliatus
ENSDARG00000020217	cpsf4	100	79.705	ENSCGRG00001024184	Cpsf4	100	79.336	Cricetulus_griseus_chok1gshd
ENSDARG00000020217	cpsf4	100	85.240	ENSCGRG00000013892	Cpsf4	100	85.240	Cricetulus_griseus_crigri
ENSDARG00000020217	cpsf4	100	84.871	ENSCSEG00000019055	cpsf4	100	84.871	Cynoglossus_semilaevis
ENSDARG00000020217	cpsf4	100	84.502	ENSCVAG00000016528	cpsf4	100	84.502	Cyprinodon_variegatus
ENSDARG00000020217	cpsf4	100	85.240	ENSDNOG00000006344	CPSF4	100	85.240	Dasypus_novemcinctus
ENSDARG00000020217	cpsf4	81	84.018	ENSDORG00000000742	Cpsf4	100	84.018	Dipodomys_ordii
ENSDARG00000020217	cpsf4	100	53.488	FBgn0015621	Clp	99	54.795	Drosophila_melanogaster
ENSDARG00000020217	cpsf4	69	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSDARG00000020217	cpsf4	99	63.569	ENSEBUG00000012552	cpsf4	98	64.312	Eptatretus_burgeri
ENSDARG00000020217	cpsf4	100	79.705	ENSEASG00005002487	CPSF4	100	79.336	Equus_asinus_asinus
ENSDARG00000020217	cpsf4	100	85.240	ENSECAG00000007525	CPSF4	100	85.240	Equus_caballus
ENSDARG00000020217	cpsf4	63	94.030	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSDARG00000020217	cpsf4	100	86.496	ENSELUG00000011481	cpsf4	100	86.496	Esox_lucius
ENSDARG00000020217	cpsf4	100	85.240	ENSFCAG00000015070	CPSF4	100	85.240	Felis_catus
ENSDARG00000020217	cpsf4	100	79.336	ENSFALG00000013799	CPSF4	100	77.122	Ficedula_albicollis
ENSDARG00000020217	cpsf4	61	56.395	ENSFALG00000012906	-	100	56.395	Ficedula_albicollis
ENSDARG00000020217	cpsf4	90	83.673	ENSFDAG00000014092	CPSF4	100	83.673	Fukomys_damarensis
ENSDARG00000020217	cpsf4	100	83.395	ENSFHEG00000010880	cpsf4	100	83.395	Fundulus_heteroclitus
ENSDARG00000020217	cpsf4	100	81.319	ENSGMOG00000002330	cpsf4	100	81.319	Gadus_morhua
ENSDARG00000020217	cpsf4	99	35.979	ENSGALG00000004441	-	98	35.567	Gallus_gallus
ENSDARG00000020217	cpsf4	100	79.705	ENSGALG00000004714	CPSF4	100	77.491	Gallus_gallus
ENSDARG00000020217	cpsf4	100	84.133	ENSGAFG00000010580	cpsf4	100	84.133	Gambusia_affinis
ENSDARG00000020217	cpsf4	100	79.121	ENSGACG00000007792	cpsf4	100	77.818	Gasterosteus_aculeatus
ENSDARG00000020217	cpsf4	61	80.000	ENSGAGG00000020579	-	92	80.000	Gopherus_agassizii
ENSDARG00000020217	cpsf4	100	86.347	ENSGAGG00000021835	CPSF4	100	86.347	Gopherus_agassizii
ENSDARG00000020217	cpsf4	100	85.240	ENSGGOG00000015131	CPSF4	100	85.240	Gorilla_gorilla
ENSDARG00000020217	cpsf4	100	84.502	ENSHBUG00000013699	cpsf4	100	84.502	Haplochromis_burtoni
ENSDARG00000020217	cpsf4	100	84.926	ENSHGLG00000017150	CPSF4	100	84.926	Heterocephalus_glaber_female
ENSDARG00000020217	cpsf4	87	81.857	ENSHGLG00100009215	-	100	81.857	Heterocephalus_glaber_male
ENSDARG00000020217	cpsf4	65	65.537	ENSHGLG00100017302	-	84	66.484	Heterocephalus_glaber_male
ENSDARG00000020217	cpsf4	100	83.026	ENSHCOG00000004397	cpsf4	100	83.026	Hippocampus_comes
ENSDARG00000020217	cpsf4	100	86.765	ENSIPUG00000017147	cpsf4	100	86.765	Ictalurus_punctatus
ENSDARG00000020217	cpsf4	100	85.240	ENSSTOG00000001688	CPSF4	100	85.240	Ictidomys_tridecemlineatus
ENSDARG00000020217	cpsf4	100	85.240	ENSJJAG00000019426	Cpsf4	100	85.240	Jaculus_jaculus
ENSDARG00000020217	cpsf4	100	82.657	ENSKMAG00000015642	cpsf4	100	82.657	Kryptolebias_marmoratus
ENSDARG00000020217	cpsf4	100	83.764	ENSLACG00000010938	CPSF4	100	83.764	Latimeria_chalumnae
ENSDARG00000020217	cpsf4	100	58.696	ENSLACG00000018470	-	100	58.088	Latimeria_chalumnae
ENSDARG00000020217	cpsf4	100	84.502	ENSLOCG00000004814	cpsf4	100	85.609	Lepisosteus_oculatus
ENSDARG00000020217	cpsf4	100	85.609	ENSLAFG00000000159	CPSF4	100	85.609	Loxodonta_africana
ENSDARG00000020217	cpsf4	100	85.240	ENSMFAG00000001462	CPSF4	100	85.240	Macaca_fascicularis
ENSDARG00000020217	cpsf4	100	85.240	ENSMMUG00000019191	CPSF4	100	85.240	Macaca_mulatta
ENSDARG00000020217	cpsf4	100	85.240	ENSMNEG00000032306	CPSF4	100	85.240	Macaca_nemestrina
ENSDARG00000020217	cpsf4	100	85.240	ENSMLEG00000034721	CPSF4	100	85.240	Mandrillus_leucophaeus
ENSDARG00000020217	cpsf4	100	84.615	ENSMAMG00000006244	cpsf4	100	84.249	Mastacembelus_armatus
ENSDARG00000020217	cpsf4	100	84.502	ENSMZEG00005007515	cpsf4	100	84.502	Maylandia_zebra
ENSDARG00000020217	cpsf4	87	77.215	ENSMGAG00000004235	CPSF4	100	74.684	Meleagris_gallopavo
ENSDARG00000020217	cpsf4	100	85.240	ENSMAUG00000021253	Cpsf4	100	85.240	Mesocricetus_auratus
ENSDARG00000020217	cpsf4	100	85.240	ENSMICG00000017429	CPSF4	100	85.240	Microcebus_murinus
ENSDARG00000020217	cpsf4	100	85.240	ENSMOCG00000014901	Cpsf4	100	85.240	Microtus_ochrogaster
ENSDARG00000020217	cpsf4	100	84.191	ENSMMOG00000001813	cpsf4	100	84.191	Mola_mola
ENSDARG00000020217	cpsf4	100	85.978	ENSMODG00000001367	CPSF4	100	85.978	Monodelphis_domestica
ENSDARG00000020217	cpsf4	100	83.026	ENSMALG00000012611	cpsf4	100	83.026	Monopterus_albus
ENSDARG00000020217	cpsf4	100	85.240	MGP_CAROLIEiJ_G0028012	Cpsf4	100	85.240	Mus_caroli
ENSDARG00000020217	cpsf4	100	85.240	ENSMUSG00000029625	Cpsf4	100	85.240	Mus_musculus
ENSDARG00000020217	cpsf4	100	85.240	MGP_PahariEiJ_G0024581	Cpsf4	100	85.240	Mus_pahari
ENSDARG00000020217	cpsf4	100	85.240	MGP_SPRETEiJ_G0029013	Cpsf4	100	85.240	Mus_spretus
ENSDARG00000020217	cpsf4	100	85.240	ENSMPUG00000016508	CPSF4	100	85.240	Mustela_putorius_furo
ENSDARG00000020217	cpsf4	87	76.793	ENSMLUG00000010980	CPSF4	100	76.371	Myotis_lucifugus
ENSDARG00000020217	cpsf4	100	85.240	ENSNGAG00000001567	Cpsf4	100	85.240	Nannospalax_galili
ENSDARG00000020217	cpsf4	91	83.806	ENSNBRG00000003943	cpsf4	98	83.806	Neolamprologus_brichardi
ENSDARG00000020217	cpsf4	100	82.288	ENSNLEG00000011074	CPSF4	100	82.288	Nomascus_leucogenys
ENSDARG00000020217	cpsf4	100	85.978	ENSMEUG00000006955	CPSF4	100	85.978	Notamacropus_eugenii
ENSDARG00000020217	cpsf4	100	84.871	ENSOPRG00000013663	CPSF4	100	84.871	Ochotona_princeps
ENSDARG00000020217	cpsf4	100	85.240	ENSODEG00000011181	-	100	85.240	Octodon_degus
ENSDARG00000020217	cpsf4	100	65.818	ENSODEG00000009779	-	100	65.818	Octodon_degus
ENSDARG00000020217	cpsf4	99	68.539	ENSODEG00000018283	-	91	67.790	Octodon_degus
ENSDARG00000020217	cpsf4	100	84.502	ENSONIG00000008495	cpsf4	100	84.502	Oreochromis_niloticus
ENSDARG00000020217	cpsf4	100	54.317	ENSOANG00000009568	-	100	53.597	Ornithorhynchus_anatinus
ENSDARG00000020217	cpsf4	87	82.700	ENSOANG00000007729	CPSF4	100	82.700	Ornithorhynchus_anatinus
ENSDARG00000020217	cpsf4	100	85.609	ENSOCUG00000002437	CPSF4	70	85.609	Oryctolagus_cuniculus
ENSDARG00000020217	cpsf4	100	84.133	ENSORLG00000022798	cpsf4	100	84.133	Oryzias_latipes
ENSDARG00000020217	cpsf4	100	84.133	ENSORLG00020008548	cpsf4	100	84.133	Oryzias_latipes_hni
ENSDARG00000020217	cpsf4	100	83.764	ENSORLG00015019575	cpsf4	100	83.764	Oryzias_latipes_hsok
ENSDARG00000020217	cpsf4	100	83.026	ENSOMEG00000005176	cpsf4	100	83.026	Oryzias_melastigma
ENSDARG00000020217	cpsf4	100	85.240	ENSOGAG00000010884	CPSF4	100	85.240	Otolemur_garnettii
ENSDARG00000020217	cpsf4	100	75.273	ENSOARG00000018668	CPSF4	100	75.273	Ovis_aries
ENSDARG00000020217	cpsf4	100	85.240	ENSPPAG00000043355	CPSF4	100	85.240	Pan_paniscus
ENSDARG00000020217	cpsf4	100	85.240	ENSPPRG00000003134	CPSF4	100	85.240	Panthera_pardus
ENSDARG00000020217	cpsf4	90	84.426	ENSPTIG00000005604	CPSF4	90	84.426	Panthera_tigris_altaica
ENSDARG00000020217	cpsf4	100	85.240	ENSPTRG00000019453	CPSF4	100	85.240	Pan_troglodytes
ENSDARG00000020217	cpsf4	100	85.240	ENSPANG00000023123	CPSF4	100	85.240	Papio_anubis
ENSDARG00000020217	cpsf4	100	86.545	ENSPKIG00000014278	cpsf4	100	85.091	Paramormyrops_kingsleyae
ENSDARG00000020217	cpsf4	80	84.404	ENSPSIG00000011229	CPSF4	100	84.404	Pelodiscus_sinensis
ENSDARG00000020217	cpsf4	81	57.919	ENSPSIG00000018198	-	100	55.856	Pelodiscus_sinensis
ENSDARG00000020217	cpsf4	100	74.908	ENSPMGG00000017735	cpsf4	100	74.908	Periophthalmus_magnuspinnatus
ENSDARG00000020217	cpsf4	100	85.240	ENSPEMG00000004508	Cpsf4	100	85.240	Peromyscus_maniculatus_bairdii
ENSDARG00000020217	cpsf4	100	85.978	ENSPCIG00000024776	CPSF4	100	85.978	Phascolarctos_cinereus
ENSDARG00000020217	cpsf4	100	84.133	ENSPFOG00000014912	cpsf4	100	84.133	Poecilia_formosa
ENSDARG00000020217	cpsf4	100	77.491	ENSPLAG00000009599	cpsf4	100	77.491	Poecilia_latipinna
ENSDARG00000020217	cpsf4	100	84.133	ENSPMEG00000009790	cpsf4	100	84.133	Poecilia_mexicana
ENSDARG00000020217	cpsf4	100	83.764	ENSPREG00000018166	cpsf4	100	83.764	Poecilia_reticulata
ENSDARG00000020217	cpsf4	87	83.475	ENSPPYG00000017378	CPSF4	100	83.475	Pongo_abelii
ENSDARG00000020217	cpsf4	100	85.240	ENSPCAG00000001892	CPSF4	100	85.240	Procavia_capensis
ENSDARG00000020217	cpsf4	100	85.240	ENSPCOG00000012771	CPSF4	100	85.240	Propithecus_coquereli
ENSDARG00000020217	cpsf4	100	80.074	ENSPVAG00000007531	CPSF4	100	80.074	Pteropus_vampyrus
ENSDARG00000020217	cpsf4	100	84.502	ENSPNYG00000018559	cpsf4	100	84.502	Pundamilia_nyererei
ENSDARG00000020217	cpsf4	100	89.299	ENSPNAG00000003736	cpsf4	100	90.037	Pygocentrus_nattereri
ENSDARG00000020217	cpsf4	100	79.336	ENSRNOG00000000985	Cpsf4	100	78.967	Rattus_norvegicus
ENSDARG00000020217	cpsf4	87	83.898	ENSRBIG00000033886	CPSF4	100	83.898	Rhinopithecus_bieti
ENSDARG00000020217	cpsf4	100	79.705	ENSRROG00000040431	CPSF4	100	79.336	Rhinopithecus_roxellana
ENSDARG00000020217	cpsf4	100	85.240	ENSSBOG00000020493	CPSF4	100	85.240	Saimiri_boliviensis_boliviensis
ENSDARG00000020217	cpsf4	100	85.978	ENSSHAG00000011533	CPSF4	100	85.978	Sarcophilus_harrisii
ENSDARG00000020217	cpsf4	100	85.560	ENSSFOG00015007883	cpsf4	100	85.507	Scleropages_formosus
ENSDARG00000020217	cpsf4	100	80.882	ENSSMAG00000006374	cpsf4	100	80.074	Scophthalmus_maximus
ENSDARG00000020217	cpsf4	100	84.191	ENSSDUG00000018887	cpsf4	100	84.191	Seriola_dumerili
ENSDARG00000020217	cpsf4	100	84.502	ENSSLDG00000019078	cpsf4	100	84.502	Seriola_lalandi_dorsalis
ENSDARG00000020217	cpsf4	87	83.898	ENSSARG00000012416	CPSF4	100	83.898	Sorex_araneus
ENSDARG00000020217	cpsf4	100	85.240	ENSSPUG00000003549	CPSF4	100	85.240	Sphenodon_punctatus
ENSDARG00000020217	cpsf4	96	56.154	ENSSPUG00000014803	-	97	56.923	Sphenodon_punctatus
ENSDARG00000020217	cpsf4	100	80.443	ENSSPAG00000006174	cpsf4	100	78.967	Stegastes_partitus
ENSDARG00000020217	cpsf4	100	79.705	ENSSSCG00000026896	CPSF4	100	79.336	Sus_scrofa
ENSDARG00000020217	cpsf4	100	78.388	ENSTGUG00000007552	CPSF4	100	76.190	Taeniopygia_guttata
ENSDARG00000020217	cpsf4	100	82.657	ENSTRUG00000024220	cpsf4	100	82.657	Takifugu_rubripes
ENSDARG00000020217	cpsf4	100	82.288	ENSTNIG00000006265	cpsf4	100	82.288	Tetraodon_nigroviridis
ENSDARG00000020217	cpsf4	87	75.000	ENSTBEG00000011406	CPSF4	100	75.000	Tupaia_belangeri
ENSDARG00000020217	cpsf4	100	73.063	ENSTTRG00000003007	CPSF4	76	95.455	Tursiops_truncatus
ENSDARG00000020217	cpsf4	92	77.912	ENSUAMG00000008051	CPSF4	85	77.510	Ursus_americanus
ENSDARG00000020217	cpsf4	100	79.336	ENSUMAG00000009474	CPSF4	100	78.967	Ursus_maritimus
ENSDARG00000020217	cpsf4	100	79.705	ENSVVUG00000008824	CPSF4	100	79.336	Vulpes_vulpes
ENSDARG00000020217	cpsf4	99	57.664	ENSXETG00000004641	cpsf4l	99	59.328	Xenopus_tropicalis
ENSDARG00000020217	cpsf4	100	82.206	ENSXETG00000009892	cpsf4	100	82.206	Xenopus_tropicalis
ENSDARG00000020217	cpsf4	100	83.764	ENSXCOG00000016040	cpsf4	100	83.764	Xiphophorus_couchianus
ENSDARG00000020217	cpsf4	100	84.133	ENSXMAG00000024670	cpsf4	100	84.133	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0008270	zinc ion binding	-	IEA	Function
GO:0042462	eye photoreceptor cell development	15716491.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process