EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000020465 (Gene tree)
Gene ID: 322880
Gene Symbol: ewsr1b
Alias: fb40b11|fusl|wu:fb40b11|wu:fb75g09|zgc:55864
Full Name: EWS RNA-binding protein 1b
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 9165 bases
Position: chr5:24873196-24882360
Accession: ZDB-GENE-030131-1600
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000110206	zf-RanBP	PF00641.18	1.1e-10	1	1
ENSDARP00000002269	zf-RanBP	PF00641.18	1.1e-10	1	1
ENSDARP00000110206	RRM_1	PF00076.22	1.6e-07	1	1
ENSDARP00000002269	RRM_1	PF00076.22	1.6e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000143851	-	897	-	ENSDARP00000112768	285 (aa)	-	A5PMS7
ENSDART00000146742	-	1207	-	-	- (aa)	-	-
ENSDART00000003998	-	2083	XM_005165107	ENSDARP00000002269	579 (aa)	XP_005165164	Q4QRG0
ENSDART00000139998	-	780	-	-	- (aa)	-	-
ENSDART00000127773	-	2441	-	ENSDARP00000110206	578 (aa)	-	Q803E3

Gene Model

Click here to download ENSDARG00000020465's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000020465's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000020465	ewsr1b	79	95.695	ENSDARG00000117011	ewsr1b	100	95.695

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000020465	ewsr1b	84	45.794	ENSG00000182944	EWSR1	92	49.664	Homo_sapiens
ENSDARG00000020465	ewsr1b	69	58.034	ENSAPOG00000006531	ewsr1b	87	60.777	Acanthochromis_polyacanthus
ENSDARG00000020465	ewsr1b	83	59.281	ENSAOCG00000011339	ewsr1b	83	60.583	Amphiprion_ocellaris
ENSDARG00000020465	ewsr1b	83	59.281	ENSAPEG00000024145	ewsr1b	83	60.583	Amphiprion_percula
ENSDARG00000020465	ewsr1b	69	58.473	ENSATEG00000010664	ewsr1b	84	63.056	Anabas_testudineus
ENSDARG00000020465	ewsr1b	83	41.219	ENSAPLG00000005917	EWSR1	79	39.167	Anas_platyrhynchos
ENSDARG00000020465	ewsr1b	72	44.595	ENSANAG00000037725	-	63	34.434	Aotus_nancymaae
ENSDARG00000020465	ewsr1b	100	42.036	ENSANAG00000038314	-	83	38.641	Aotus_nancymaae
ENSDARG00000020465	ewsr1b	84	41.339	ENSANAG00000036110	-	83	43.048	Aotus_nancymaae
ENSDARG00000020465	ewsr1b	84	45.880	ENSANAG00000032368	EWSR1	66	46.336	Aotus_nancymaae
ENSDARG00000020465	ewsr1b	67	57.985	ENSACLG00000025479	ewsr1b	78	61.434	Astatotilapia_calliptera
ENSDARG00000020465	ewsr1b	84	65.743	ENSAMXG00000003041	ewsr1b	82	65.354	Astyanax_mexicanus
ENSDARG00000020465	ewsr1b	84	46.168	ENSCJAG00000019987	EWSR1	66	46.698	Callithrix_jacchus
ENSDARG00000020465	ewsr1b	84	44.128	ENSCAFG00000017391	-	69	39.583	Canis_familiaris
ENSDARG00000020465	ewsr1b	83	44.991	ENSCAFG00000012160	-	69	39.184	Canis_familiaris
ENSDARG00000020465	ewsr1b	84	47.222	ENSCAFG00000000749	-	82	44.015	Canis_familiaris
ENSDARG00000020465	ewsr1b	84	46.479	ENSCAFG00000007811	-	84	43.870	Canis_familiaris
ENSDARG00000020465	ewsr1b	84	41.491	ENSCAFG00020007816	-	83	45.038	Canis_lupus_dingo
ENSDARG00000020465	ewsr1b	84	46.881	ENSTSYG00000003407	EWSR1	66	46.698	Carlito_syrichta
ENSDARG00000020465	ewsr1b	84	43.527	ENSCPOG00000009502	EWSR1	85	40.238	Cavia_porcellus
ENSDARG00000020465	ewsr1b	63	39.492	ENSCCAG00000012734	-	51	39.329	Cebus_capucinus
ENSDARG00000020465	ewsr1b	84	46.168	ENSCCAG00000035490	EWSR1	66	46.698	Cebus_capucinus
ENSDARG00000020465	ewsr1b	85	41.558	ENSCCAG00000002555	-	65	40.749	Cebus_capucinus
ENSDARG00000020465	ewsr1b	83	45.547	ENSCCAG00000025662	-	83	43.436	Cebus_capucinus
ENSDARG00000020465	ewsr1b	84	46.816	ENSCATG00000037756	EWSR1	66	46.698	Cercocebus_atys
ENSDARG00000020465	ewsr1b	84	45.028	ENSCLAG00000006466	EWSR1	69	40.947	Chinchilla_lanigera
ENSDARG00000020465	ewsr1b	93	38.492	ENSCHOG00000009549	-	90	35.329	Choloepus_hoffmanni
ENSDARG00000020465	ewsr1b	74	40.166	ENSCPBG00000018002	EWSR1	82	38.941	Chrysemys_picta_bellii
ENSDARG00000020465	ewsr1b	83	46.000	ENSCANG00000034463	EWSR1	66	46.172	Colobus_angolensis_palliatus
ENSDARG00000020465	ewsr1b	84	43.066	ENSCGRG00001008309	Ewsr1	69	40.417	Cricetulus_griseus_chok1gshd
ENSDARG00000020465	ewsr1b	84	43.066	ENSCGRG00000008951	Ewsr1	69	40.417	Cricetulus_griseus_crigri
ENSDARG00000020465	ewsr1b	84	55.731	ENSCSEG00000015972	EWSR1	89	54.981	Cynoglossus_semilaevis
ENSDARG00000020465	ewsr1b	69	61.337	ENSCVAG00000013836	ewsr1b	84	63.198	Cyprinodon_variegatus
ENSDARG00000020465	ewsr1b	85	61.480	ENSELUG00000013575	ewsr1b	84	64.054	Esox_lucius
ENSDARG00000020465	ewsr1b	84	46.457	ENSFCAG00000004243	EWSR1	66	46.934	Felis_catus
ENSDARG00000020465	ewsr1b	83	45.699	ENSFDAG00000004062	EWSR1	68	44.643	Fukomys_damarensis
ENSDARG00000020465	ewsr1b	69	59.857	ENSFHEG00000016297	ewsr1b	84	61.197	Fundulus_heteroclitus
ENSDARG00000020465	ewsr1b	83	57.744	ENSGMOG00000012263	ewsr1b	85	57.276	Gadus_morhua
ENSDARG00000020465	ewsr1b	69	58.711	ENSGAFG00000018293	ewsr1b	89	62.741	Gambusia_affinis
ENSDARG00000020465	ewsr1b	83	58.730	ENSGACG00000008603	ewsr1b	84	58.915	Gasterosteus_aculeatus
ENSDARG00000020465	ewsr1b	84	45.981	ENSGGOG00000012212	EWSR1	66	46.462	Gorilla_gorilla
ENSDARG00000020465	ewsr1b	100	45.172	ENSGGOG00000038123	-	67	42.157	Gorilla_gorilla
ENSDARG00000020465	ewsr1b	84	45.028	ENSHGLG00100016217	-	69	40.412	Heterocephalus_glaber_male
ENSDARG00000020465	ewsr1b	66	59.057	ENSHCOG00000010568	ewsr1b	77	55.028	Hippocampus_comes
ENSDARG00000020465	ewsr1b	52	78.947	ENSIPUG00000016402	ewsr1b	87	66.723	Ictalurus_punctatus
ENSDARG00000020465	ewsr1b	77	42.285	ENSSTOG00000020479	-	65	39.744	Ictidomys_tridecemlineatus
ENSDARG00000020465	ewsr1b	84	41.284	ENSJJAG00000003308	Ewsr1	69	40.625	Jaculus_jaculus
ENSDARG00000020465	ewsr1b	83	57.654	ENSKMAG00000017617	ewsr1b	84	60.803	Kryptolebias_marmoratus
ENSDARG00000020465	ewsr1b	84	44.237	ENSLOCG00000008118	ewsr1b	86	47.297	Lepisosteus_oculatus
ENSDARG00000020465	ewsr1b	84	46.816	ENSMFAG00000038861	EWSR1	69	43.949	Macaca_fascicularis
ENSDARG00000020465	ewsr1b	84	46.816	ENSMMUG00000021374	EWSR1	66	46.698	Macaca_mulatta
ENSDARG00000020465	ewsr1b	84	46.816	ENSMNEG00000036277	EWSR1	69	43.949	Macaca_nemestrina
ENSDARG00000020465	ewsr1b	84	46.816	ENSMLEG00000016144	EWSR1	69	43.949	Mandrillus_leucophaeus
ENSDARG00000020465	ewsr1b	69	56.325	ENSMAMG00000016510	ewsr1b	83	61.509	Mastacembelus_armatus
ENSDARG00000020465	ewsr1b	69	46.383	ENSMZEG00005017417	ewsr1b	83	61.628	Maylandia_zebra
ENSDARG00000020465	ewsr1b	76	41.949	ENSMICG00000028701	-	75	40.724	Microcebus_murinus
ENSDARG00000020465	ewsr1b	61	56.716	ENSMICG00000026933	-	66	39.604	Microcebus_murinus
ENSDARG00000020465	ewsr1b	99	42.185	ENSMICG00000004264	-	79	78.723	Microcebus_murinus
ENSDARG00000020465	ewsr1b	69	54.610	ENSMALG00000013219	ewsr1b	83	61.877	Monopterus_albus
ENSDARG00000020465	ewsr1b	84	41.144	ENSMUSG00000009079	Ewsr1	69	40.625	Mus_musculus
ENSDARG00000020465	ewsr1b	84	43.585	MGP_PahariEiJ_G0016844	Ewsr1	68	42.795	Mus_pahari
ENSDARG00000020465	ewsr1b	84	40.406	MGP_SPRETEiJ_G0016889	Ewsr1	69	40.625	Mus_spretus
ENSDARG00000020465	ewsr1b	84	41.284	ENSNGAG00000012255	Ewsr1	69	40.625	Nannospalax_galili
ENSDARG00000020465	ewsr1b	83	40.329	ENSMEUG00000013663	-	89	38.462	Notamacropus_eugenii
ENSDARG00000020465	ewsr1b	84	44.737	ENSODEG00000017496	-	69	41.152	Octodon_degus
ENSDARG00000020465	ewsr1b	84	41.975	ENSODEG00000004433	-	68	39.496	Octodon_degus
ENSDARG00000020465	ewsr1b	100	37.236	ENSODEG00000003371	-	74	76.923	Octodon_degus
ENSDARG00000020465	ewsr1b	52	53.526	ENSOCUG00000023130	-	68	43.972	Oryctolagus_cuniculus
ENSDARG00000020465	ewsr1b	69	56.835	ENSORLG00000006712	ewsr1b	100	58.979	Oryzias_latipes
ENSDARG00000020465	ewsr1b	69	56.835	ENSORLG00020015936	ewsr1b	84	59.073	Oryzias_latipes_hni
ENSDARG00000020465	ewsr1b	69	56.699	ENSORLG00015004285	ewsr1b	100	58.746	Oryzias_latipes_hsok
ENSDARG00000020465	ewsr1b	69	57.482	ENSOMEG00000002003	ewsr1b	84	60.425	Oryzias_melastigma
ENSDARG00000020465	ewsr1b	84	45.981	ENSPPAG00000032867	EWSR1	66	46.462	Pan_paniscus
ENSDARG00000020465	ewsr1b	84	44.862	ENSPPAG00000035278	-	68	41.422	Pan_paniscus
ENSDARG00000020465	ewsr1b	84	47.852	ENSPPRG00000003780	-	65	43.735	Panthera_pardus
ENSDARG00000020465	ewsr1b	84	46.260	ENSPPRG00000009859	-	66	46.698	Panthera_pardus
ENSDARG00000020465	ewsr1b	84	46.457	ENSPTIG00000008375	EWSR1	66	46.934	Panthera_tigris_altaica
ENSDARG00000020465	ewsr1b	84	45.981	ENSPTRG00000014218	EWSR1	66	46.462	Pan_troglodytes
ENSDARG00000020465	ewsr1b	84	46.816	ENSPANG00000026055	EWSR1	66	46.698	Papio_anubis
ENSDARG00000020465	ewsr1b	84	46.746	ENSPCIG00000006189	EWSR1	69	43.284	Phascolarctos_cinereus
ENSDARG00000020465	ewsr1b	69	58.753	ENSPFOG00000007595	ewsr1b	84	62.813	Poecilia_formosa
ENSDARG00000020465	ewsr1b	69	58.753	ENSPLAG00000003150	ewsr1b	84	62.813	Poecilia_latipinna
ENSDARG00000020465	ewsr1b	69	58.273	ENSPMEG00000022186	ewsr1b	84	62.428	Poecilia_mexicana
ENSDARG00000020465	ewsr1b	69	58.852	ENSPREG00000021835	ewsr1b	79	62.308	Poecilia_reticulata
ENSDARG00000020465	ewsr1b	85	39.406	ENSPPYG00000000560	-	89	36.436	Pongo_abelii
ENSDARG00000020465	ewsr1b	83	44.422	ENSPCOG00000024660	-	69	40.417	Propithecus_coquereli
ENSDARG00000020465	ewsr1b	84	43.575	ENSPCOG00000025789	-	71	38.263	Propithecus_coquereli
ENSDARG00000020465	ewsr1b	84	61.000	ENSPNAG00000013598	ewsr1b	89	83.871	Pygocentrus_nattereri
ENSDARG00000020465	ewsr1b	84	40.449	ENSRBIG00000032890	EWSR1	74	78.723	Rhinopithecus_bieti
ENSDARG00000020465	ewsr1b	84	47.191	ENSRROG00000043139	-	65	43.262	Rhinopithecus_roxellana
ENSDARG00000020465	ewsr1b	84	46.168	ENSRROG00000040300	-	66	46.698	Rhinopithecus_roxellana
ENSDARG00000020465	ewsr1b	90	41.144	ENSSBOG00000026631	-	83	41.339	Saimiri_boliviensis_boliviensis
ENSDARG00000020465	ewsr1b	84	46.168	ENSSBOG00000029942	EWSR1	66	46.698	Saimiri_boliviensis_boliviensis
ENSDARG00000020465	ewsr1b	83	38.051	ENSSBOG00000032932	-	84	42.315	Saimiri_boliviensis_boliviensis
ENSDARG00000020465	ewsr1b	84	40.780	ENSSBOG00000032705	-	69	39.957	Saimiri_boliviensis_boliviensis
ENSDARG00000020465	ewsr1b	69	58.392	ENSSMAG00000015449	ewsr1b	84	59.962	Scophthalmus_maximus
ENSDARG00000020465	ewsr1b	82	55.870	ENSSDUG00000011226	ewsr1b	83	59.029	Seriola_dumerili
ENSDARG00000020465	ewsr1b	79	54.526	ENSSLDG00000024827	ewsr1b	81	57.231	Seriola_lalandi_dorsalis
ENSDARG00000020465	ewsr1b	91	46.828	ENSSARG00000008953	EWSR1	76	78.723	Sorex_araneus
ENSDARG00000020465	ewsr1b	80	43.737	ENSSPUG00000008126	-	66	36.961	Sphenodon_punctatus
ENSDARG00000020465	ewsr1b	69	57.857	ENSSPAG00000009675	ewsr1b	83	61.165	Stegastes_partitus
ENSDARG00000020465	ewsr1b	84	46.154	ENSSSCG00000009974	EWSR1	74	40.417	Sus_scrofa
ENSDARG00000020465	ewsr1b	68	49.315	ENSTNIG00000015854	ewsr1b	84	50.823	Tetraodon_nigroviridis
ENSDARG00000020465	ewsr1b	80	45.287	ENSUAMG00000012259	-	66	44.156	Ursus_americanus
ENSDARG00000020465	ewsr1b	84	45.957	ENSUMAG00000016019	-	69	40.417	Ursus_maritimus
ENSDARG00000020465	ewsr1b	83	42.857	ENSVVUG00000006285	-	73	40.215	Vulpes_vulpes
ENSDARG00000020465	ewsr1b	81	42.329	ENSVVUG00000016473	-	74	38.889	Vulpes_vulpes
ENSDARG00000020465	ewsr1b	68	57.488	ENSXCOG00000017341	ewsr1b	100	65.101	Xiphophorus_couchianus
ENSDARG00000020465	ewsr1b	69	59.189	ENSXMAG00000017933	ewsr1b	84	62.548	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000278	mitotic cell cycle	17912356.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0021954	central nervous system neuron development	17912356.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function