EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000020467 (Gene tree)
Gene ID: 321979
Gene Symbol: safb
Alias: wu:fb40a03|wu:fd42g06|zgc:55387
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 8965 bases
Position: chr22:15695746-15704710
Accession: ZDB-GENE-030131-698
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000005702	RRM_5	PF13893.6	7.8e-07	1	1
ENSDARP00000005702	RRM_1	PF00076.22	6.2e-13	1	1
ENSDARP00000105357	SAP	PF02037.27	2.7e-08	1	1
ENSDARP00000005702	SAP	PF02037.27	6.6e-08	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000130238	-	645	-	ENSDARP00000105357	200 (aa)	-	E7FFA2
ENSDART00000140918	-	843	-	-	- (aa)	-	-
ENSDART00000017838	-	3020	-	ENSDARP00000005702	855 (aa)	-	Q1LV81

Gene Model

Click here to download ENSDARG00000020467's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000020467's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000020467	safb	58	34.861	ENSDARG00000052728	sltm	67	46.809

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000020467	safb	99	44.528	ENSG00000160633	SAFB	92	42.421	Homo_sapiens
ENSDARG00000020467	safb	98	62.645	ENSAPOG00000022508	safb	96	61.401	Acanthochromis_polyacanthus
ENSDARG00000020467	safb	63	58.268	ENSAMEG00000012254	SAFB	91	41.810	Ailuropoda_melanoleuca
ENSDARG00000020467	safb	98	57.491	ENSACIG00000006247	safb	96	57.330	Amphilophus_citrinellus
ENSDARG00000020467	safb	98	58.528	ENSAOCG00000006308	safb	97	62.252	Amphiprion_ocellaris
ENSDARG00000020467	safb	98	62.761	ENSAPEG00000023342	safb	96	62.530	Amphiprion_percula
ENSDARG00000020467	safb	98	63.918	ENSATEG00000004998	safb	96	64.294	Anabas_testudineus
ENSDARG00000020467	safb	59	45.781	ENSAPLG00000006355	-	98	48.329	Anas_platyrhynchos
ENSDARG00000020467	safb	60	41.754	ENSAPLG00000005780	-	94	44.958	Anas_platyrhynchos
ENSDARG00000020467	safb	55	46.087	ENSACAG00000016893	-	96	42.583	Anolis_carolinensis
ENSDARG00000020467	safb	99	45.021	ENSANAG00000028821	SAFB	89	43.224	Aotus_nancymaae
ENSDARG00000020467	safb	98	61.040	ENSACLG00000001926	safb	96	60.740	Astatotilapia_calliptera
ENSDARG00000020467	safb	97	68.816	ENSAMXG00000018154	safb	97	68.772	Astyanax_mexicanus
ENSDARG00000020467	safb	99	44.184	ENSBTAG00000007875	SAFB	91	41.850	Bos_taurus
ENSDARG00000020467	safb	69	54.286	ENSBTAG00000051794	-	60	58.400	Bos_taurus
ENSDARG00000020467	safb	86	46.885	ENSCJAG00000017081	SAFB	87	58.537	Callithrix_jacchus
ENSDARG00000020467	safb	60	60.000	ENSCAFG00000018803	SAFB	78	41.705	Canis_familiaris
ENSDARG00000020467	safb	60	60.000	ENSCAFG00020018943	SAFB	89	41.947	Canis_lupus_dingo
ENSDARG00000020467	safb	99	44.077	ENSCHIG00000007262	SAFB	91	41.965	Capra_hircus
ENSDARG00000020467	safb	60	55.833	ENSCPOG00000026322	SAFB	51	48.406	Cavia_porcellus
ENSDARG00000020467	safb	99	45.233	ENSCCAG00000020193	SAFB	89	43.306	Cebus_capucinus
ENSDARG00000020467	safb	99	43.139	ENSCATG00000029994	SAFB	89	42.590	Cercocebus_atys
ENSDARG00000020467	safb	60	60.000	ENSCLAG00000007734	SAFB	90	44.124	Chinchilla_lanigera
ENSDARG00000020467	safb	60	60.000	ENSCSAG00000009949	SAFB	89	42.590	Chlorocebus_sabaeus
ENSDARG00000020467	safb	52	34.698	ENSCHOG00000003208	SAFB	87	35.859	Choloepus_hoffmanni
ENSDARG00000020467	safb	93	42.414	ENSCPBG00000010928	-	92	45.422	Chrysemys_picta_bellii
ENSDARG00000020467	safb	91	45.219	ENSCPBG00000010936	-	92	47.010	Chrysemys_picta_bellii
ENSDARG00000020467	safb	87	43.987	ENSCANG00000004774	-	93	42.246	Colobus_angolensis_palliatus
ENSDARG00000020467	safb	94	43.195	ENSCANG00000019754	-	92	39.889	Colobus_angolensis_palliatus
ENSDARG00000020467	safb	59	62.393	ENSCGRG00001002254	Safb	89	42.209	Cricetulus_griseus_chok1gshd
ENSDARG00000020467	safb	56	38.632	ENSCGRG00000011529	Safb	88	39.146	Cricetulus_griseus_crigri
ENSDARG00000020467	safb	98	56.235	ENSCSEG00000019870	safb	96	54.031	Cynoglossus_semilaevis
ENSDARG00000020467	safb	98	54.706	ENSCVAG00000002226	safb	96	55.407	Cyprinodon_variegatus
ENSDARG00000020467	safb	60	59.167	ENSDNOG00000015746	SAFB	95	40.603	Dasypus_novemcinctus
ENSDARG00000020467	safb	59	56.410	ENSDORG00000016200	Safb	90	39.370	Dipodomys_ordii
ENSDARG00000020467	safb	60	57.500	ENSEASG00005023019	SAFB	89	43.503	Equus_asinus_asinus
ENSDARG00000020467	safb	60	57.500	ENSECAG00000018659	SAFB	83	42.225	Equus_caballus
ENSDARG00000020467	safb	99	60.754	ENSELUG00000022327	safb	99	59.338	Esox_lucius
ENSDARG00000020467	safb	60	59.167	ENSFCAG00000011835	SAFB	89	41.781	Felis_catus
ENSDARG00000020467	safb	73	54.000	ENSFALG00000013882	-	85	45.829	Ficedula_albicollis
ENSDARG00000020467	safb	60	60.000	ENSFDAG00000020306	SAFB	75	39.297	Fukomys_damarensis
ENSDARG00000020467	safb	98	56.257	ENSFHEG00000004219	safb	97	56.686	Fundulus_heteroclitus
ENSDARG00000020467	safb	98	56.301	ENSGMOG00000014280	safb	96	57.757	Gadus_morhua
ENSDARG00000020467	safb	69	53.237	ENSGALG00000013365	-	92	46.084	Gallus_gallus
ENSDARG00000020467	safb	73	56.757	ENSGALG00000001948	-	96	47.619	Gallus_gallus
ENSDARG00000020467	safb	99	53.691	ENSGAFG00000016162	safb	97	53.917	Gambusia_affinis
ENSDARG00000020467	safb	98	60.578	ENSGACG00000011385	safb	96	60.119	Gasterosteus_aculeatus
ENSDARG00000020467	safb	95	48.512	ENSGAGG00000008424	-	94	49.490	Gopherus_agassizii
ENSDARG00000020467	safb	69	46.986	ENSGAGG00000017702	-	88	51.871	Gopherus_agassizii
ENSDARG00000020467	safb	99	44.218	ENSGGOG00000015109	SAFB	89	42.308	Gorilla_gorilla
ENSDARG00000020467	safb	98	56.075	ENSHBUG00000009218	safb	96	53.874	Haplochromis_burtoni
ENSDARG00000020467	safb	60	60.000	ENSHGLG00000015883	SAFB	90	40.888	Heterocephalus_glaber_female
ENSDARG00000020467	safb	60	60.000	ENSHGLG00100004228	SAFB	71	41.946	Heterocephalus_glaber_male
ENSDARG00000020467	safb	94	54.435	ENSHCOG00000001705	safb	98	55.263	Hippocampus_comes
ENSDARG00000020467	safb	99	69.965	ENSIPUG00000024869	safb2	97	71.344	Ictalurus_punctatus
ENSDARG00000020467	safb	59	40.933	ENSSTOG00000002783	SAFB	91	39.541	Ictidomys_tridecemlineatus
ENSDARG00000020467	safb	63	58.647	ENSJJAG00000009021	Safb	91	42.582	Jaculus_jaculus
ENSDARG00000020467	safb	98	59.908	ENSKMAG00000022308	safb	96	59.668	Kryptolebias_marmoratus
ENSDARG00000020467	safb	98	61.442	ENSLBEG00000006015	safb	96	60.603	Labrus_bergylta
ENSDARG00000020467	safb	92	50.794	ENSLACG00000018090	SAFB	95	50.111	Latimeria_chalumnae
ENSDARG00000020467	safb	98	62.113	ENSLOCG00000003613	safb	98	61.827	Lepisosteus_oculatus
ENSDARG00000020467	safb	99	42.392	ENSLAFG00000003840	SAFB	90	43.387	Loxodonta_africana
ENSDARG00000020467	safb	99	44.480	ENSMFAG00000003885	SAFB	72	59.740	Macaca_fascicularis
ENSDARG00000020467	safb	99	44.816	ENSMMUG00000017970	SAFB	92	42.517	Macaca_mulatta
ENSDARG00000020467	safb	99	43.191	ENSMNEG00000035637	SAFB	92	40.317	Macaca_nemestrina
ENSDARG00000020467	safb	99	42.279	ENSMLEG00000038637	SAFB	72	59.740	Mandrillus_leucophaeus
ENSDARG00000020467	safb	100	62.205	ENSMAMG00000003357	safb	89	61.309	Mastacembelus_armatus
ENSDARG00000020467	safb	98	61.040	ENSMZEG00005009120	safb	96	60.947	Maylandia_zebra
ENSDARG00000020467	safb	70	57.447	ENSMGAG00000001051	-	71	61.475	Meleagris_gallopavo
ENSDARG00000020467	safb	60	41.969	ENSMGAG00000001101	-	91	44.366	Meleagris_gallopavo
ENSDARG00000020467	safb	65	57.364	ENSMICG00000008739	-	90	43.203	Microcebus_murinus
ENSDARG00000020467	safb	86	40.050	ENSMICG00000046795	-	75	65.753	Microcebus_murinus
ENSDARG00000020467	safb	60	60.833	ENSMOCG00000014040	Safb	89	41.980	Microtus_ochrogaster
ENSDARG00000020467	safb	99	48.276	ENSMMOG00000020366	-	69	57.037	Mola_mola
ENSDARG00000020467	safb	94	43.886	ENSMODG00000001236	SAFB	90	42.664	Monodelphis_domestica
ENSDARG00000020467	safb	98	61.574	ENSMALG00000020330	safb	97	61.876	Monopterus_albus
ENSDARG00000020467	safb	60	62.500	MGP_CAROLIEiJ_G0021780	Safb	91	42.369	Mus_caroli
ENSDARG00000020467	safb	60	62.500	ENSMUSG00000071054	Safb	91	42.369	Mus_musculus
ENSDARG00000020467	safb	62	61.290	MGP_PahariEiJ_G0020769	Safb	89	42.691	Mus_pahari
ENSDARG00000020467	safb	63	55.147	ENSMPUG00000006123	SAFB	84	42.258	Mustela_putorius_furo
ENSDARG00000020467	safb	99	44.102	ENSMLUG00000001081	SAFB	89	41.965	Myotis_lucifugus
ENSDARG00000020467	safb	60	59.167	ENSNGAG00000019882	Safb	92	39.421	Nannospalax_galili
ENSDARG00000020467	safb	97	44.275	ENSNLEG00000013551	SAFB	93	42.774	Nomascus_leucogenys
ENSDARG00000020467	safb	59	40.663	ENSOPRG00000011561	-	96	39.342	Ochotona_princeps
ENSDARG00000020467	safb	60	59.167	ENSODEG00000014838	SAFB	90	41.427	Octodon_degus
ENSDARG00000020467	safb	98	61.272	ENSONIG00000002318	safb	96	61.456	Oreochromis_niloticus
ENSDARG00000020467	safb	86	40.476	ENSOCUG00000014628	SAFB	62	41.111	Oryctolagus_cuniculus
ENSDARG00000020467	safb	96	57.619	ENSORLG00000016989	safb	95	57.706	Oryzias_latipes
ENSDARG00000020467	safb	96	50.120	ENSORLG00020000404	safb	95	51.741	Oryzias_latipes_hni
ENSDARG00000020467	safb	96	57.738	ENSORLG00015010733	safb	96	57.826	Oryzias_latipes_hsok
ENSDARG00000020467	safb	100	57.241	ENSOMEG00000009066	safb	96	57.637	Oryzias_melastigma
ENSDARG00000020467	safb	60	60.000	ENSOGAG00000027769	SAFB	90	42.759	Otolemur_garnettii
ENSDARG00000020467	safb	99	40.880	ENSOARG00000007662	-	91	41.067	Ovis_aries
ENSDARG00000020467	safb	80	41.060	ENSOARG00000007856	-	100	39.921	Ovis_aries
ENSDARG00000020467	safb	99	44.218	ENSPPAG00000035129	SAFB	89	42.308	Pan_paniscus
ENSDARG00000020467	safb	60	59.167	ENSPPRG00000017197	SAFB	89	41.781	Panthera_pardus
ENSDARG00000020467	safb	99	44.218	ENSPTRG00000010335	SAFB	89	42.308	Pan_troglodytes
ENSDARG00000020467	safb	99	44.480	ENSPANG00000007770	SAFB	72	59.740	Papio_anubis
ENSDARG00000020467	safb	99	64.334	ENSPKIG00000009902	safb	98	64.692	Paramormyrops_kingsleyae
ENSDARG00000020467	safb	97	46.349	ENSPSIG00000011679	-	94	48.101	Pelodiscus_sinensis
ENSDARG00000020467	safb	99	44.828	ENSPSIG00000009367	-	91	45.701	Pelodiscus_sinensis
ENSDARG00000020467	safb	60	60.000	ENSPEMG00000020428	Safb	89	41.524	Peromyscus_maniculatus_bairdii
ENSDARG00000020467	safb	99	55.057	ENSPFOG00000007745	safb	97	56.671	Poecilia_formosa
ENSDARG00000020467	safb	99	54.713	ENSPLAG00000001614	safb	97	53.802	Poecilia_latipinna
ENSDARG00000020467	safb	99	54.598	ENSPMEG00000021023	safb	98	55.623	Poecilia_mexicana
ENSDARG00000020467	safb	99	53.182	ENSPREG00000012496	safb	97	55.374	Poecilia_reticulata
ENSDARG00000020467	safb	60	59.167	ENSPPYG00000009428	SAFB	92	42.308	Pongo_abelii
ENSDARG00000020467	safb	96	38.445	ENSPCAG00000006475	SAFB	89	39.232	Procavia_capensis
ENSDARG00000020467	safb	96	42.345	ENSPCOG00000014090	SAFB	89	42.393	Propithecus_coquereli
ENSDARG00000020467	safb	95	42.826	ENSPVAG00000004913	SAFB	73	57.895	Pteropus_vampyrus
ENSDARG00000020467	safb	99	70.345	ENSPNAG00000021838	safb	98	70.379	Pygocentrus_nattereri
ENSDARG00000020467	safb	60	63.333	ENSRNOG00000050543	Safb	96	41.429	Rattus_norvegicus
ENSDARG00000020467	safb	99	43.722	ENSRBIG00000042509	SAFB	72	58.750	Rhinopithecus_bieti
ENSDARG00000020467	safb	99	44.325	ENSRROG00000029278	SAFB	89	42.657	Rhinopithecus_roxellana
ENSDARG00000020467	safb	99	44.872	ENSSBOG00000026291	SAFB	89	43.458	Saimiri_boliviensis_boliviensis
ENSDARG00000020467	safb	99	65.045	ENSSFOG00015008156	safb	98	64.959	Scleropages_formosus
ENSDARG00000020467	safb	98	62.171	ENSSMAG00000009316	safb	96	61.629	Scophthalmus_maximus
ENSDARG00000020467	safb	98	62.993	ENSSDUG00000009652	safb	96	62.874	Seriola_dumerili
ENSDARG00000020467	safb	98	63.448	ENSSLDG00000001670	safb	96	63.787	Seriola_lalandi_dorsalis
ENSDARG00000020467	safb	59	42.553	ENSSARG00000010475	SAFB	96	39.744	Sorex_araneus
ENSDARG00000020467	safb	51	43.529	ENSSPUG00000009820	-	97	47.014	Sphenodon_punctatus
ENSDARG00000020467	safb	57	41.636	ENSSPUG00000009747	-	96	41.371	Sphenodon_punctatus
ENSDARG00000020467	safb	100	58.333	ENSSPAG00000015682	safb	98	58.726	Stegastes_partitus
ENSDARG00000020467	safb	95	44.676	ENSSSCG00000013522	SAFB	97	42.750	Sus_scrofa
ENSDARG00000020467	safb	67	56.296	ENSTGUG00000000489	-	96	48.963	Taeniopygia_guttata
ENSDARG00000020467	safb	73	54.000	ENSTGUG00000000502	-	97	45.575	Taeniopygia_guttata
ENSDARG00000020467	safb	98	61.027	ENSTRUG00000003567	safb	96	61.058	Takifugu_rubripes
ENSDARG00000020467	safb	91	53.782	ENSTNIG00000015470	safb	75	57.803	Tetraodon_nigroviridis
ENSDARG00000020467	safb	76	71.795	ENSTTRG00000013588	SAFB	75	69.048	Tursiops_truncatus
ENSDARG00000020467	safb	60	59.167	ENSUMAG00000009734	SAFB	60	64.865	Ursus_maritimus
ENSDARG00000020467	safb	60	60.000	ENSVVUG00000013720	SAFB	78	42.063	Vulpes_vulpes
ENSDARG00000020467	safb	87	44.224	ENSXETG00000008755	safb	93	52.344	Xenopus_tropicalis
ENSDARG00000020467	safb	99	55.517	ENSXMAG00000003458	safb	97	56.118	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0050684	regulation of mRNA processing	21873635.	IBA	Process
GO:0050684	regulation of mRNA processing	-	IEA	Process