EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000020746 (Gene tree)
Gene ID: 553814
Gene Symbol: gfi1aa
Alias: gfi1.1|gfi1a|zgc:113277
Full Name: growth factor independent 1A transcription repressor a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 19123 bases
Position: chr2:10766744-10785866
Accession: ZDB-GENE-050522-534
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000017502	zf-C2H2	PF00096.26	2.6e-27	1	6
ENSDARP00000017502	zf-C2H2	PF00096.26	2.6e-27	2	6
ENSDARP00000017502	zf-C2H2	PF00096.26	2.6e-27	3	6
ENSDARP00000017502	zf-C2H2	PF00096.26	2.6e-27	4	6
ENSDARP00000017502	zf-C2H2	PF00096.26	2.6e-27	5	6
ENSDARP00000017502	zf-C2H2	PF00096.26	2.6e-27	6	6
ENSDARP00000147922	zf-C2H2	PF00096.26	2.6e-27	1	6
ENSDARP00000147922	zf-C2H2	PF00096.26	2.6e-27	2	6
ENSDARP00000147922	zf-C2H2	PF00096.26	2.6e-27	3	6
ENSDARP00000147922	zf-C2H2	PF00096.26	2.6e-27	4	6
ENSDARP00000147922	zf-C2H2	PF00096.26	2.6e-27	5	6
ENSDARP00000147922	zf-C2H2	PF00096.26	2.6e-27	6	6
ENSDARP00000017502	zf-met	PF12874.7	2.1e-09	1	2
ENSDARP00000017502	zf-met	PF12874.7	2.1e-09	2	2
ENSDARP00000147922	zf-met	PF12874.7	2.1e-09	1	2
ENSDARP00000147922	zf-met	PF12874.7	2.1e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000187782	-	1607	-	ENSDARP00000147922	385 (aa)	-	F1RBA7
ENSDART00000015379	-	1464	-	ENSDARP00000017502	385 (aa)	-	F1RBA7

Gene Model

Click here to download ENSDARG00000020746's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000020746's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000020746	gfi1aa	100	49.000	ENSDARG00000079947	gfi1b	72	86.550
ENSDARG00000020746	gfi1aa	100	65.414	ENSDARG00000044457	gfi1ab	100	65.414

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000020746	gfi1aa	100	64.128	ENSAPOG00000005043	gfi1aa	100	65.174	Acanthochromis_polyacanthus
ENSDARG00000020746	gfi1aa	100	64.304	ENSACIG00000021378	gfi1aa	100	64.304	Amphilophus_citrinellus
ENSDARG00000020746	gfi1aa	100	63.636	ENSAOCG00000022957	gfi1aa	100	65.174	Amphiprion_ocellaris
ENSDARG00000020746	gfi1aa	100	63.882	ENSAPEG00000014539	gfi1aa	100	65.423	Amphiprion_percula
ENSDARG00000020746	gfi1aa	100	63.184	ENSATEG00000019026	gfi1aa	100	63.184	Anabas_testudineus
ENSDARG00000020746	gfi1aa	100	62.750	ENSACLG00000008641	gfi1aa	100	62.750	Astatotilapia_calliptera
ENSDARG00000020746	gfi1aa	100	63.636	ENSHBUG00000007389	gfi1aa	100	63.636	Haplochromis_burtoni
ENSDARG00000020746	gfi1aa	100	63.427	ENSKMAG00000002148	gfi1aa	100	64.541	Kryptolebias_marmoratus
ENSDARG00000020746	gfi1aa	100	62.657	ENSLBEG00000006603	gfi1aa	100	62.814	Labrus_bergylta
ENSDARG00000020746	gfi1aa	100	60.652	ENSMAMG00000004896	gfi1aa	100	61.404	Mastacembelus_armatus
ENSDARG00000020746	gfi1aa	100	62.750	ENSMZEG00005004578	gfi1aa	100	62.750	Maylandia_zebra
ENSDARG00000020746	gfi1aa	100	55.670	ENSMMOG00000006167	gfi1aa	100	55.670	Mola_mola
ENSDARG00000020746	gfi1aa	100	62.750	ENSNBRG00000002673	gfi1aa	100	62.750	Neolamprologus_brichardi
ENSDARG00000020746	gfi1aa	100	62.406	ENSPNYG00000002189	gfi1aa	100	62.406	Pundamilia_nyererei
ENSDARG00000020746	gfi1aa	100	59.223	ENSSMAG00000006797	gfi1aa	100	60.922	Scophthalmus_maximus
ENSDARG00000020746	gfi1aa	100	62.592	ENSSDUG00000011654	gfi1aa	100	63.210	Seriola_dumerili
ENSDARG00000020746	gfi1aa	100	62.121	ENSSLDG00000016512	gfi1aa	100	63.889	Seriola_lalandi_dorsalis
ENSDARG00000020746	gfi1aa	85	57.880	ENSSPAG00000000927	gfi1aa	94	58.430	Stegastes_partitus
ENSDARG00000020746	gfi1aa	100	63.861	ENSTRUG00000004744	gfi1aa	100	63.861	Takifugu_rubripes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0030097	hemopoiesis	-	IEA	Process
GO:0030218	erythrocyte differentiation	22960038.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051569	regulation of histone H3-K4 methylation	-	IEA	Process
GO:0060215	primitive hemopoiesis	22960038.26951200.	IMP	Process