EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000021107 (Gene tree)
Gene ID: 394018
Gene Symbol: sf3a2
Alias: zgc:56097|zgc:77448
Full Name: splicing factor 3a%2C subunit 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 12407 bases
Position: chr2:57825432-57837838
Accession: ZDB-GENE-040426-897
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000003884	zf-met	PF12874.7	6.4e-07	1	1
ENSDARP00000153395	zf-met	PF12874.7	6.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000010699	-	1056	-	ENSDARP00000003884	278 (aa)	-	Q7ZVD4
ENSDART00000185970	-	870	-	ENSDARP00000153395	278 (aa)	-	Q7ZVD4
ENSDART00000133055	-	866	-	-	- (aa)	-	-
ENSDART00000143973	-	701	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000021107's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000021107's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000021107	sf3a2	81	93.750	ENSG00000104897	SF3A2	100	96.296	Homo_sapiens
ENSDARG00000021107	sf3a2	87	92.181	ENSAPOG00000003916	sf3a2	86	89.804	Acanthochromis_polyacanthus
ENSDARG00000021107	sf3a2	81	93.750	ENSAMEG00000005469	SF3A2	53	90.204	Ailuropoda_melanoleuca
ENSDARG00000021107	sf3a2	85	92.469	ENSACIG00000018153	sf3a2	81	92.469	Amphilophus_citrinellus
ENSDARG00000021107	sf3a2	87	92.181	ENSAOCG00000015960	sf3a2	86	89.804	Amphiprion_ocellaris
ENSDARG00000021107	sf3a2	87	92.181	ENSAPEG00000012336	sf3a2	86	89.804	Amphiprion_percula
ENSDARG00000021107	sf3a2	87	91.770	ENSATEG00000015449	sf3a2	86	89.412	Anabas_testudineus
ENSDARG00000021107	sf3a2	67	95.135	ENSANAG00000034031	-	89	95.135	Aotus_nancymaae
ENSDARG00000021107	sf3a2	91	88.281	ENSACLG00000002356	sf3a2	83	90.574	Astatotilapia_calliptera
ENSDARG00000021107	sf3a2	100	84.797	ENSAMXG00000032428	sf3a2	80	94.650	Astyanax_mexicanus
ENSDARG00000021107	sf3a2	81	93.750	ENSBTAG00000025452	SF3A2	51	90.204	Bos_taurus
ENSDARG00000021107	sf3a2	78	80.093	WBGene00008683	repo-1	97	80.093	Caenorhabditis_elegans
ENSDARG00000021107	sf3a2	81	93.750	ENSCJAG00000013206	-	53	90.204	Callithrix_jacchus
ENSDARG00000021107	sf3a2	81	93.750	ENSCAFG00000019414	SF3A2	51	90.204	Canis_familiaris
ENSDARG00000021107	sf3a2	81	93.750	ENSCAFG00020018153	SF3A2	51	90.204	Canis_lupus_dingo
ENSDARG00000021107	sf3a2	81	93.750	ENSCHIG00000018323	SF3A2	51	90.204	Capra_hircus
ENSDARG00000021107	sf3a2	65	96.154	ENSCAPG00000003402	-	90	96.154	Cavia_aperea
ENSDARG00000021107	sf3a2	81	93.750	ENSCPOG00000032868	SF3A2	54	90.204	Cavia_porcellus
ENSDARG00000021107	sf3a2	81	93.750	ENSCCAG00000009812	SF3A2	87	95.676	Cebus_capucinus
ENSDARG00000021107	sf3a2	81	93.750	ENSCATG00000038453	SF3A2	53	90.204	Cercocebus_atys
ENSDARG00000021107	sf3a2	81	93.750	ENSCLAG00000008987	SF3A2	54	90.204	Chinchilla_lanigera
ENSDARG00000021107	sf3a2	81	93.750	ENSCSAG00000011717	SF3A2	52	90.204	Chlorocebus_sabaeus
ENSDARG00000021107	sf3a2	87	88.980	ENSCPBG00000018569	SF3A2	78	89.388	Chrysemys_picta_bellii
ENSDARG00000021107	sf3a2	77	86.512	ENSCING00000003319	zf(matrin)-2	62	86.512	Ciona_intestinalis
ENSDARG00000021107	sf3a2	77	85.581	ENSCSAVG00000007862	-	57	85.581	Ciona_savignyi
ENSDARG00000021107	sf3a2	81	93.750	ENSCANG00000024451	SF3A2	53	90.204	Colobus_angolensis_palliatus
ENSDARG00000021107	sf3a2	81	93.750	ENSCGRG00001001802	Sf3a2	51	90.204	Cricetulus_griseus_chok1gshd
ENSDARG00000021107	sf3a2	81	93.750	ENSCGRG00000011089	Sf3a2	94	96.154	Cricetulus_griseus_crigri
ENSDARG00000021107	sf3a2	93	87.308	ENSCSEG00000014308	sf3a2	84	91.632	Cynoglossus_semilaevis
ENSDARG00000021107	sf3a2	87	92.593	ENSCVAG00000021349	sf3a2	83	92.593	Cyprinodon_variegatus
ENSDARG00000021107	sf3a2	81	93.304	ENSDORG00000014445	Sf3a2	53	89.796	Dipodomys_ordii
ENSDARG00000021107	sf3a2	77	84.722	FBgn0036314	Sf3a2	88	78.838	Drosophila_melanogaster
ENSDARG00000021107	sf3a2	81	93.750	ENSEASG00005021972	SF3A2	53	90.204	Equus_asinus_asinus
ENSDARG00000021107	sf3a2	86	92.531	ENSELUG00000008471	sf3a2	79	92.593	Esox_lucius
ENSDARG00000021107	sf3a2	81	93.304	ENSFCAG00000030476	SF3A2	56	89.796	Felis_catus
ENSDARG00000021107	sf3a2	67	96.257	ENSFALG00000013785	-	57	85.268	Ficedula_albicollis
ENSDARG00000021107	sf3a2	65	96.154	ENSFDAG00000020911	-	93	96.154	Fukomys_damarensis
ENSDARG00000021107	sf3a2	86	93.724	ENSFHEG00000002392	sf3a2	82	93.361	Fundulus_heteroclitus
ENSDARG00000021107	sf3a2	86	90.871	ENSGMOG00000012186	sf3a2	91	83.577	Gadus_morhua
ENSDARG00000021107	sf3a2	78	96.296	ENSGALG00000021679	SF3A2	96	77.558	Gallus_gallus
ENSDARG00000021107	sf3a2	81	95.536	ENSGAFG00000008478	sf3a2	90	86.792	Gambusia_affinis
ENSDARG00000021107	sf3a2	87	92.181	ENSGACG00000015255	sf3a2	83	92.531	Gasterosteus_aculeatus
ENSDARG00000021107	sf3a2	70	87.437	ENSGAGG00000008500	SF3A2	96	74.031	Gopherus_agassizii
ENSDARG00000021107	sf3a2	81	93.750	ENSGGOG00000006613	SF3A2	53	90.204	Gorilla_gorilla
ENSDARG00000021107	sf3a2	91	88.281	ENSHBUG00000021796	sf3a2	83	90.574	Haplochromis_burtoni
ENSDARG00000021107	sf3a2	81	93.750	ENSHGLG00000015102	SF3A2	88	96.175	Heterocephalus_glaber_female
ENSDARG00000021107	sf3a2	81	93.750	ENSHGLG00100000418	SF3A2	88	96.175	Heterocephalus_glaber_male
ENSDARG00000021107	sf3a2	94	86.312	ENSHCOG00000001223	sf3a2	84	90.164	Hippocampus_comes
ENSDARG00000021107	sf3a2	87	92.181	ENSIPUG00000019071	sf3a2	81	92.181	Ictalurus_punctatus
ENSDARG00000021107	sf3a2	81	93.750	ENSSTOG00000007495	SF3A2	90	88.525	Ictidomys_tridecemlineatus
ENSDARG00000021107	sf3a2	81	93.304	ENSJJAG00000010635	Sf3a2	94	96.154	Jaculus_jaculus
ENSDARG00000021107	sf3a2	90	88.845	ENSKMAG00000006295	sf3a2	81	91.286	Kryptolebias_marmoratus
ENSDARG00000021107	sf3a2	87	92.181	ENSLBEG00000000677	sf3a2	90	86.792	Labrus_bergylta
ENSDARG00000021107	sf3a2	78	96.759	ENSLACG00000008744	SF3A2	78	91.020	Latimeria_chalumnae
ENSDARG00000021107	sf3a2	82	93.506	ENSLOCG00000005835	sf3a2	88	83.883	Lepisosteus_oculatus
ENSDARG00000021107	sf3a2	81	93.750	ENSMFAG00000002638	SF3A2	53	90.204	Macaca_fascicularis
ENSDARG00000021107	sf3a2	81	93.750	ENSMMUG00000010111	SF3A2	53	90.204	Macaca_mulatta
ENSDARG00000021107	sf3a2	81	93.750	ENSMNEG00000036916	SF3A2	52	90.204	Macaca_nemestrina
ENSDARG00000021107	sf3a2	87	91.358	ENSMAMG00000009881	sf3a2	86	90.196	Mastacembelus_armatus
ENSDARG00000021107	sf3a2	91	88.281	ENSMZEG00005025609	sf3a2	83	90.574	Maylandia_zebra
ENSDARG00000021107	sf3a2	78	96.296	ENSMGAG00000001950	SF3A2	96	77.558	Meleagris_gallopavo
ENSDARG00000021107	sf3a2	65	96.154	ENSMAUG00000005644	-	94	96.154	Mesocricetus_auratus
ENSDARG00000021107	sf3a2	81	93.750	ENSMICG00000015443	SF3A2	53	90.204	Microcebus_murinus
ENSDARG00000021107	sf3a2	81	93.750	ENSMOCG00000007216	Sf3a2	53	90.574	Microtus_ochrogaster
ENSDARG00000021107	sf3a2	86	84.711	ENSMMOG00000010657	sf3a2	86	84.711	Mola_mola
ENSDARG00000021107	sf3a2	78	95.370	ENSMODG00000004681	SF3A2	50	89.388	Monodelphis_domestica
ENSDARG00000021107	sf3a2	87	92.181	ENSMALG00000020442	sf3a2	86	90.196	Monopterus_albus
ENSDARG00000021107	sf3a2	81	93.750	MGP_CAROLIEiJ_G0015602	-	94	96.154	Mus_caroli
ENSDARG00000021107	sf3a2	81	93.750	ENSMUSG00000020211	Sf3a2	94	96.154	Mus_musculus
ENSDARG00000021107	sf3a2	81	93.750	MGP_PahariEiJ_G0031015	-	94	96.154	Mus_pahari
ENSDARG00000021107	sf3a2	81	93.750	MGP_SPRETEiJ_G0016420	-	94	96.154	Mus_spretus
ENSDARG00000021107	sf3a2	81	93.304	ENSMPUG00000006956	SF3A2	53	89.796	Mustela_putorius_furo
ENSDARG00000021107	sf3a2	81	93.304	ENSMLUG00000004426	-	55	90.164	Myotis_lucifugus
ENSDARG00000021107	sf3a2	65	95.604	ENSNGAG00000023309	-	94	95.604	Nannospalax_galili
ENSDARG00000021107	sf3a2	87	90.574	ENSNBRG00000019872	sf3a2	83	90.574	Neolamprologus_brichardi
ENSDARG00000021107	sf3a2	67	94.118	ENSODEG00000013722	-	100	94.118	Octodon_degus
ENSDARG00000021107	sf3a2	87	90.574	ENSONIG00000010198	sf3a2	83	90.574	Oreochromis_niloticus
ENSDARG00000021107	sf3a2	74	94.634	ENSOANG00000013649	-	98	94.175	Ornithorhynchus_anatinus
ENSDARG00000021107	sf3a2	95	88.015	ENSORLG00000015301	sf3a2	82	92.887	Oryzias_latipes
ENSDARG00000021107	sf3a2	95	88.015	ENSORLG00020017235	sf3a2	82	92.887	Oryzias_latipes_hni
ENSDARG00000021107	sf3a2	85	92.887	ENSORLG00015017116	sf3a2	90	87.072	Oryzias_latipes_hsok
ENSDARG00000021107	sf3a2	85	92.050	ENSOMEG00000020860	sf3a2	82	92.050	Oryzias_melastigma
ENSDARG00000021107	sf3a2	81	93.750	ENSOGAG00000033389	SF3A2	53	90.204	Otolemur_garnettii
ENSDARG00000021107	sf3a2	81	93.750	ENSOARG00000014357	SF3A2	60	90.574	Ovis_aries
ENSDARG00000021107	sf3a2	81	78.125	ENSPPAG00000037864	-	51	76.230	Pan_paniscus
ENSDARG00000021107	sf3a2	81	93.304	ENSPPRG00000007798	SF3A2	52	89.796	Panthera_pardus
ENSDARG00000021107	sf3a2	81	93.750	ENSPTRG00000010227	SF3A2	53	90.204	Pan_troglodytes
ENSDARG00000021107	sf3a2	81	93.750	ENSPANG00000007949	SF3A2	53	90.204	Papio_anubis
ENSDARG00000021107	sf3a2	87	93.416	ENSPKIG00000009487	sf3a2	77	94.239	Paramormyrops_kingsleyae
ENSDARG00000021107	sf3a2	87	88.259	ENSPSIG00000010839	SF3A2	96	76.797	Pelodiscus_sinensis
ENSDARG00000021107	sf3a2	78	96.296	ENSPMGG00000017249	sf3a2	91	85.932	Periophthalmus_magnuspinnatus
ENSDARG00000021107	sf3a2	81	93.750	ENSPEMG00000021288	Sf3a2	53	90.574	Peromyscus_maniculatus_bairdii
ENSDARG00000021107	sf3a2	78	97.248	ENSPFOG00000015945	sf3a2	90	87.547	Poecilia_formosa
ENSDARG00000021107	sf3a2	78	97.248	ENSPLAG00000010052	sf3a2	90	87.170	Poecilia_latipinna
ENSDARG00000021107	sf3a2	78	97.248	ENSPMEG00000000184	sf3a2	90	87.547	Poecilia_mexicana
ENSDARG00000021107	sf3a2	78	97.248	ENSPREG00000017808	sf3a2	90	87.170	Poecilia_reticulata
ENSDARG00000021107	sf3a2	81	93.750	ENSPPYG00000009342	SF3A2	54	90.204	Pongo_abelii
ENSDARG00000021107	sf3a2	71	94.898	ENSPCAG00000014513	SF3A2	53	80.408	Procavia_capensis
ENSDARG00000021107	sf3a2	81	93.750	ENSPCOG00000020295	SF3A2	55	90.204	Propithecus_coquereli
ENSDARG00000021107	sf3a2	91	88.281	ENSPNYG00000006928	sf3a2	83	90.574	Pundamilia_nyererei
ENSDARG00000021107	sf3a2	100	83.051	ENSPNAG00000027582	sf3a2	80	93.004	Pygocentrus_nattereri
ENSDARG00000021107	sf3a2	81	93.304	ENSRNOG00000019349	Sf3a2	52	89.796	Rattus_norvegicus
ENSDARG00000021107	sf3a2	81	93.750	ENSRBIG00000026709	SF3A2	54	90.204	Rhinopithecus_bieti
ENSDARG00000021107	sf3a2	81	93.750	ENSRROG00000034440	SF3A2	52	90.204	Rhinopithecus_roxellana
ENSDARG00000021107	sf3a2	78	94.907	ENSSHAG00000011677	-	99	89.344	Sarcophilus_harrisii
ENSDARG00000021107	sf3a2	69	85.938	ENSSHAG00000011646	-	78	80.909	Sarcophilus_harrisii
ENSDARG00000021107	sf3a2	91	90.625	ENSSFOG00015010920	sf3a2	69	93.827	Scleropages_formosus
ENSDARG00000021107	sf3a2	86	91.736	ENSSMAG00000002629	sf3a2	85	90.984	Scophthalmus_maximus
ENSDARG00000021107	sf3a2	89	91.165	ENSSDUG00000015810	sf3a2	84	92.623	Seriola_dumerili
ENSDARG00000021107	sf3a2	89	91.165	ENSSLDG00000010874	sf3a2	84	92.623	Seriola_lalandi_dorsalis
ENSDARG00000021107	sf3a2	87	92.623	ENSSPAG00000004960	sf3a2	86	90.234	Stegastes_partitus
ENSDARG00000021107	sf3a2	81	93.304	ENSSSCG00000039757	SF3A2	53	89.796	Sus_scrofa
ENSDARG00000021107	sf3a2	74	96.098	ENSTGUG00000000305	SF3A2	100	96.098	Taeniopygia_guttata
ENSDARG00000021107	sf3a2	86	91.250	ENSTRUG00000009045	sf3a2	83	91.667	Takifugu_rubripes
ENSDARG00000021107	sf3a2	86	91.667	ENSTNIG00000015318	sf3a2	83	92.083	Tetraodon_nigroviridis
ENSDARG00000021107	sf3a2	81	77.232	ENSTTRG00000010177	-	53	75.102	Tursiops_truncatus
ENSDARG00000021107	sf3a2	81	93.750	ENSVVUG00000002578	SF3A2	51	90.204	Vulpes_vulpes
ENSDARG00000021107	sf3a2	87	90.164	ENSXETG00000024943	sf3a2	70	79.931	Xenopus_tropicalis
ENSDARG00000021107	sf3a2	81	95.536	ENSXCOG00000008222	sf3a2	83	92.181	Xiphophorus_couchianus
ENSDARG00000021107	sf3a2	81	95.536	ENSXMAG00000029068	sf3a2	83	92.181	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component