EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000021184 (Gene tree)
Gene ID: 407613
Gene Symbol: rbfox1l
Alias: Fox-1|ZFmu1A11s|a2bp1l|hm:zeh0082|zeh0082
Full Name: RNA binding fox-1 homolog 1%2C like
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 19442 bases
Position: chr16:31900127-31919568
Accession: ZDB-GENE-040923-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000016637	Fox-1_C	PF12414.8	1.7e-32	1	1
ENSDARP00000016637	RRM_1	PF00076.22	1.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000027364	-	2205	XM_005158173	ENSDARP00000016637	382 (aa)	XP_005158230	Q7ZT82
ENSDART00000135669	-	624	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000021184's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000021184's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000021184	rbfox1l	68	64.479	ENSDARG00000010083	rbfox3a	67	73.128
ENSDARG00000021184	rbfox1l	57	56.327	ENSDARG00000052182	rbfox2	100	57.895
ENSDARG00000021184	rbfox1l	82	52.960	ENSDARG00000074310	rbfox3b	97	59.402
ENSDARG00000021184	rbfox1l	90	53.034	ENSDARG00000014746	rbfox1	75	74.302

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000021184	rbfox1l	97	82.086	ENSAPOG00000016304	rbfox1l	98	83.155	Acanthochromis_polyacanthus
ENSDARG00000021184	rbfox1l	100	80.890	ENSACIG00000006441	rbfox1l	100	80.890	Amphilophus_citrinellus
ENSDARG00000021184	rbfox1l	83	79.128	ENSAOCG00000020938	rbfox1l	93	78.683	Amphiprion_ocellaris
ENSDARG00000021184	rbfox1l	100	81.347	ENSAPEG00000008232	rbfox1l	100	83.420	Amphiprion_percula
ENSDARG00000021184	rbfox1l	100	82.984	ENSATEG00000022649	rbfox1l	100	81.152	Anabas_testudineus
ENSDARG00000021184	rbfox1l	64	72.112	ENSACAG00000011931	-	91	70.000	Anolis_carolinensis
ENSDARG00000021184	rbfox1l	100	83.679	ENSACLG00000021394	rbfox1l	100	83.420	Astatotilapia_calliptera
ENSDARG00000021184	rbfox1l	100	91.885	ENSAMXG00000010470	rbfox1l	100	91.885	Astyanax_mexicanus
ENSDARG00000021184	rbfox1l	100	55.443	ENSCPBG00000010944	-	100	55.357	Chrysemys_picta_bellii
ENSDARG00000021184	rbfox1l	100	85.079	ENSCSEG00000018898	rbfox1l	100	86.649	Cynoglossus_semilaevis
ENSDARG00000021184	rbfox1l	100	82.902	ENSCVAG00000007986	rbfox1l	100	81.606	Cyprinodon_variegatus
ENSDARG00000021184	rbfox1l	100	80.457	ENSELUG00000015077	rbfox1l	100	80.203	Esox_lucius
ENSDARG00000021184	rbfox1l	78	92.683	ENSFHEG00000016557	rbfox1l	95	92.683	Fundulus_heteroclitus
ENSDARG00000021184	rbfox1l	100	82.902	ENSGMOG00000005040	rbfox1l	100	82.124	Gadus_morhua
ENSDARG00000021184	rbfox1l	92	81.513	ENSGAFG00000013211	rbfox1l	97	80.672	Gambusia_affinis
ENSDARG00000021184	rbfox1l	100	84.456	ENSGACG00000010757	rbfox1l	100	83.938	Gasterosteus_aculeatus
ENSDARG00000021184	rbfox1l	65	69.323	ENSGAGG00000012440	-	86	69.636	Gopherus_agassizii
ENSDARG00000021184	rbfox1l	100	83.679	ENSHBUG00000013406	rbfox1l	100	83.420	Haplochromis_burtoni
ENSDARG00000021184	rbfox1l	100	83.420	ENSHCOG00000020771	rbfox1l	100	83.420	Hippocampus_comes
ENSDARG00000021184	rbfox1l	99	83.333	ENSIPUG00000000065	rbfox1l	99	83.616	Ictalurus_punctatus
ENSDARG00000021184	rbfox1l	100	82.687	ENSKMAG00000005146	rbfox1l	100	82.171	Kryptolebias_marmoratus
ENSDARG00000021184	rbfox1l	100	83.938	ENSLBEG00000017089	rbfox1l	100	86.010	Labrus_bergylta
ENSDARG00000021184	rbfox1l	100	82.642	ENSMAMG00000019480	rbfox1l	100	84.197	Mastacembelus_armatus
ENSDARG00000021184	rbfox1l	100	83.679	ENSMZEG00005016374	rbfox1l	100	83.420	Maylandia_zebra
ENSDARG00000021184	rbfox1l	100	85.079	ENSMMOG00000016530	rbfox1l	100	84.817	Mola_mola
ENSDARG00000021184	rbfox1l	100	81.414	ENSMALG00000009384	rbfox1l	100	82.723	Monopterus_albus
ENSDARG00000021184	rbfox1l	100	85.117	ENSNBRG00000003346	rbfox1l	100	84.856	Neolamprologus_brichardi
ENSDARG00000021184	rbfox1l	100	84.456	ENSONIG00000012754	rbfox1l	100	84.197	Oreochromis_niloticus
ENSDARG00000021184	rbfox1l	100	79.793	ENSORLG00000011269	rbfox1l	100	80.052	Oryzias_latipes
ENSDARG00000021184	rbfox1l	100	80.570	ENSORLG00020000162	rbfox1l	100	83.161	Oryzias_latipes_hni
ENSDARG00000021184	rbfox1l	100	81.088	ENSORLG00015013464	rbfox1l	100	83.420	Oryzias_latipes_hsok
ENSDARG00000021184	rbfox1l	100	81.088	ENSOMEG00000010584	rbfox1l	100	83.420	Oryzias_melastigma
ENSDARG00000021184	rbfox1l	100	88.743	ENSPKIG00000012029	rbfox1l	100	89.005	Paramormyrops_kingsleyae
ENSDARG00000021184	rbfox1l	100	76.963	ENSPMGG00000012082	rbfox1l	100	78.272	Periophthalmus_magnuspinnatus
ENSDARG00000021184	rbfox1l	100	83.161	ENSPFOG00000009338	rbfox1l	100	82.383	Poecilia_formosa
ENSDARG00000021184	rbfox1l	85	75.152	ENSPLAG00000012816	rbfox1l	99	75.152	Poecilia_latipinna
ENSDARG00000021184	rbfox1l	100	78.756	ENSPMEG00000017597	rbfox1l	100	76.943	Poecilia_mexicana
ENSDARG00000021184	rbfox1l	100	78.756	ENSPREG00000007940	rbfox1l	100	76.943	Poecilia_reticulata
ENSDARG00000021184	rbfox1l	100	83.420	ENSPNYG00000002098	rbfox1l	100	83.161	Pundamilia_nyererei
ENSDARG00000021184	rbfox1l	100	89.556	ENSPNAG00000001620	rbfox1l	100	90.339	Pygocentrus_nattereri
ENSDARG00000021184	rbfox1l	100	87.958	ENSSFOG00015000675	rbfox1l	100	88.482	Scleropages_formosus
ENSDARG00000021184	rbfox1l	100	84.197	ENSSMAG00000013090	rbfox1l	100	83.938	Scophthalmus_maximus
ENSDARG00000021184	rbfox1l	100	81.959	ENSSDUG00000008705	rbfox1l	100	81.347	Seriola_dumerili
ENSDARG00000021184	rbfox1l	100	81.959	ENSSLDG00000022256	rbfox1l	100	81.347	Seriola_lalandi_dorsalis
ENSDARG00000021184	rbfox1l	100	82.642	ENSSPAG00000016620	rbfox1l	100	84.456	Stegastes_partitus
ENSDARG00000021184	rbfox1l	96	79.404	ENSTRUG00000015905	rbfox1l	100	79.133	Takifugu_rubripes
ENSDARG00000021184	rbfox1l	65	82.397	ENSTNIG00000008088	rbfox1l	99	83.835	Tetraodon_nigroviridis
ENSDARG00000021184	rbfox1l	100	80.570	ENSXMAG00000023471	rbfox1l	100	81.606	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003015	heart process	26619120.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	12574126.	IDA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	21925157.	IGI	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	12574126.	IDA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007399	nervous system development	21873635.	IBA	Process
GO:0008380	RNA splicing	12574126.	IDA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0043484	regulation of RNA splicing	12574126.	IDA	Process
GO:0043484	regulation of RNA splicing	-	IEA	Process
GO:0043484	regulation of RNA splicing	21925157.	IGI	Process
GO:0043484	regulation of RNA splicing	21925157.	IMP	Process
GO:0048739	cardiac muscle fiber development	21925157.	IGI	Process
GO:0048741	skeletal muscle fiber development	21925157.	IGI	Process