EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000021257 (Gene tree)
Gene ID
336498
Gene Symbol
eif3d
Alias
eif3s7|wu:fb12a03
Full Name
eukaryotic translation initiation factor 3%2C subunit D
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Plus strand
Length
14089 bases
Position
chr3:29640837-29654925
Accession
ZDB-GENE-030131-8442
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000011011eIF-3_zetaPF05091.122.8e-21611
ENSDARP00000116681eIF-3_zetaPF05091.124.3e-21611
ENSDARP00000126163eIF-3_zetaPF05091.126e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000151517-315-ENSDARP0000012616341 (aa)-I3ITA1
ENSDART00000143234-683--- (aa)--
ENSDART00000011052-1811-ENSDARP00000011011552 (aa)-Q6TH15
ENSDART00000139315-666--- (aa)--
ENSDART00000132298-1892-ENSDARP00000116681550 (aa)-Z4YIM6
ENSDART00000151568-823-ENSDARP0000012619260 (aa)-I3ITC9
ENSDART00000150898-740-ENSDARP00000126265104 (aa)-I3ITJ7
Gene Model
Click here to download ENSDARG00000021257's gene model file
Pathways
Pathway IDPathway NameSource
dre03013RNA transportKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000021257's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000021257eif3d10090.244ENSG00000100353EIF3D10091.954Homo_sapiens
ENSDARG00000021257eif3d100100.000ENSAPOG00000002054eif3d9896.518Acanthochromis_polyacanthus
ENSDARG00000021257eif3d10090.244ENSAMEG00000009639EIF3D9792.075Ailuropoda_melanoleuca
ENSDARG00000021257eif3d100100.000ENSACIG00000013847eif3d9496.038Amphilophus_citrinellus
ENSDARG00000021257eif3d100100.000ENSAOCG00000005916-9796.284Amphiprion_ocellaris
ENSDARG00000021257eif3d100100.000ENSAOCG00000022455eif3d9696.617Amphiprion_ocellaris
ENSDARG00000021257eif3d100100.000ENSAPEG00000020361eif3d9696.617Amphiprion_percula
ENSDARG00000021257eif3d100100.000ENSATEG00000020784eif3d9696.429Anabas_testudineus
ENSDARG00000021257eif3d10090.244ENSAPLG00000002632EIF3D9984.717Anas_platyrhynchos
ENSDARG00000021257eif3d10090.244ENSACAG00000016308EIF3D9792.075Anolis_carolinensis
ENSDARG00000021257eif3d10090.244ENSANAG00000026835EIF3D9791.698Aotus_nancymaae
ENSDARG00000021257eif3d7395.522ENSACLG00000021852eif3d8195.522Astatotilapia_calliptera
ENSDARG00000021257eif3d100100.000ENSACLG00000021167eif3d9796.038Astatotilapia_calliptera
ENSDARG00000021257eif3d7395.522ENSACLG00000021712eif3d7895.522Astatotilapia_calliptera
ENSDARG00000021257eif3d7395.522ENSACLG00000021768EIF3D8195.522Astatotilapia_calliptera
ENSDARG00000021257eif3d7395.522ENSACLG00000021430EIF3D8995.522Astatotilapia_calliptera
ENSDARG00000021257eif3d10097.561ENSAMXG00000017547eif3d9696.429Astyanax_mexicanus
ENSDARG00000021257eif3d10090.244ENSBTAG00000001988EIF3D9791.887Bos_taurus
ENSDARG00000021257eif3d9644.424WBGene00001227eif-3.D9744.365Caenorhabditis_elegans
ENSDARG00000021257eif3d10090.244ENSCJAG00000013831EIF3D9791.698Callithrix_jacchus
ENSDARG00000021257eif3d10090.244ENSCAFG00000001544EIF3D9792.075Canis_familiaris
ENSDARG00000021257eif3d10090.244ENSCAFG00020004483EIF3D9792.075Canis_lupus_dingo
ENSDARG00000021257eif3d10090.244ENSCHIG00000012106EIF3D9791.887Capra_hircus
ENSDARG00000021257eif3d10090.244ENSTSYG00000008540EIF3D9791.698Carlito_syrichta
ENSDARG00000021257eif3d10087.805ENSCAPG00000015164EIF3D9489.642Cavia_aperea
ENSDARG00000021257eif3d10087.805ENSCPOG00000002529EIF3D9791.698Cavia_porcellus
ENSDARG00000021257eif3d10090.244ENSCCAG00000027331EIF3D9791.698Cebus_capucinus
ENSDARG00000021257eif3d10090.244ENSCATG00000045003EIF3D9791.698Cercocebus_atys
ENSDARG00000021257eif3d10087.805ENSCLAG00000016545EIF3D9791.698Chinchilla_lanigera
ENSDARG00000021257eif3d10090.244ENSCSAG00000007898EIF3D9791.698Chlorocebus_sabaeus
ENSDARG00000021257eif3d10090.244ENSCHOG00000004811EIF3D9789.245Choloepus_hoffmanni
ENSDARG00000021257eif3d10092.683ENSCPBG00000016309EIF3D9792.453Chrysemys_picta_bellii
ENSDARG00000021257eif3d10080.488ENSCING00000003680-9666.976Ciona_intestinalis
ENSDARG00000021257eif3d10080.488ENSCSAVG00000001450-9663.919Ciona_savignyi
ENSDARG00000021257eif3d10090.244ENSCANG00000031179EIF3D9791.698Colobus_angolensis_palliatus
ENSDARG00000021257eif3d10090.244ENSCGRG00001016584EIF3D9791.698Cricetulus_griseus_chok1gshd
ENSDARG00000021257eif3d10090.244ENSCGRG00000000302EIF3D9791.698Cricetulus_griseus_crigri
ENSDARG00000021257eif3d10097.561ENSCSEG00000020548eif3d9695.660Cynoglossus_semilaevis
ENSDARG00000021257eif3d100100.000ENSCVAG00000001999eif3d85100.000Cyprinodon_variegatus
ENSDARG00000021257eif3d10090.244ENSDNOG00000018482EIF3D9291.289Dasypus_novemcinctus
ENSDARG00000021257eif3d10090.244ENSDORG00000010491Eif3d9791.509Dipodomys_ordii
ENSDARG00000021257eif3d9365.789FBgn0040227eIF3d19359.398Drosophila_melanogaster
ENSDARG00000021257eif3d9860.000FBgn0037994eIF3d29653.974Drosophila_melanogaster
ENSDARG00000021257eif3d10090.244ENSETEG00000002070-9975.479Echinops_telfairi
ENSDARG00000021257eif3d8578.976ENSETEG00000009404-9678.976Echinops_telfairi
ENSDARG00000021257eif3d9070.270ENSETEG00000020233-10074.888Echinops_telfairi
ENSDARG00000021257eif3d8477.005ENSETEG00000016315-9977.005Echinops_telfairi
ENSDARG00000021257eif3d8877.847ENSEBUG00000009405eif3d9382.278Eptatretus_burgeri
ENSDARG00000021257eif3d10090.244ENSEASG00005018906EIF3D9791.887Equus_asinus_asinus
ENSDARG00000021257eif3d10090.244ENSECAG00000022413EIF3D9791.887Equus_caballus
ENSDARG00000021257eif3d10090.244ENSEEUG00000015771EIF3D9782.264Erinaceus_europaeus
ENSDARG00000021257eif3d10095.122ENSELUG00000018698eif3d9696.038Esox_lucius
ENSDARG00000021257eif3d10090.244ENSFCAG00000001131EIF3D9792.075Felis_catus
ENSDARG00000021257eif3d10095.122ENSFALG00000013012EIF3D9792.453Ficedula_albicollis
ENSDARG00000021257eif3d10087.805ENSFDAG00000004352EIF3D9791.509Fukomys_damarensis
ENSDARG00000021257eif3d10097.561ENSFHEG00000014986-9798.214Fundulus_heteroclitus
ENSDARG00000021257eif3d10097.561ENSGMOG00000013341eif3d9793.585Gadus_morhua
ENSDARG00000021257eif3d10092.683ENSGALG00000012529EIF3D9792.264Gallus_gallus
ENSDARG00000021257eif3d100100.000ENSGAFG00000016711-97100.000Gambusia_affinis
ENSDARG00000021257eif3d10097.561ENSGACG00000014538eif3d9796.226Gasterosteus_aculeatus
ENSDARG00000021257eif3d10092.683ENSGAGG00000009617EIF3D9792.453Gopherus_agassizii
ENSDARG00000021257eif3d10090.244ENSGGOG00000003428EIF3D9791.698Gorilla_gorilla
ENSDARG00000021257eif3d100100.000ENSHBUG00000017230eif3d9895.938Haplochromis_burtoni
ENSDARG00000021257eif3d10080.488ENSHGLG00000000135-9672.642Heterocephalus_glaber_female
ENSDARG00000021257eif3d10087.805ENSHGLG00000016422-9791.698Heterocephalus_glaber_female
ENSDARG00000021257eif3d9676.226ENSHGLG00000006449-9876.226Heterocephalus_glaber_female
ENSDARG00000021257eif3d10087.805ENSHGLG00100007477-9791.698Heterocephalus_glaber_male
ENSDARG00000021257eif3d10080.488ENSHGLG00100001321-9676.604Heterocephalus_glaber_male
ENSDARG00000021257eif3d9676.038ENSHGLG00100013710-9876.038Heterocephalus_glaber_male
ENSDARG00000021257eif3d10097.561ENSHCOG00000007799eif3d9696.038Hippocampus_comes
ENSDARG00000021257eif3d10097.561ENSIPUG00000017267eif3d9695.489Ictalurus_punctatus
ENSDARG00000021257eif3d10090.244ENSSTOG00000011335EIF3D9791.887Ictidomys_tridecemlineatus
ENSDARG00000021257eif3d10090.244ENSJJAG00000010854Eif3d9792.075Jaculus_jaculus
ENSDARG00000021257eif3d100100.000ENSKMAG00000007133eif3d9696.241Kryptolebias_marmoratus
ENSDARG00000021257eif3d10097.561ENSLBEG00000005296eif3d9695.849Labrus_bergylta
ENSDARG00000021257eif3d10090.244ENSLACG00000001606EIF3D9687.918Latimeria_chalumnae
ENSDARG00000021257eif3d10090.244ENSLAFG00000001714EIF3D9791.887Loxodonta_africana
ENSDARG00000021257eif3d10090.244ENSMFAG00000000481EIF3D9791.698Macaca_fascicularis
ENSDARG00000021257eif3d10090.244ENSMMUG00000012754EIF3D9692.991Macaca_mulatta
ENSDARG00000021257eif3d10090.244ENSMNEG00000012843EIF3D9791.698Macaca_nemestrina
ENSDARG00000021257eif3d10090.244ENSMLEG00000037251EIF3D9791.698Mandrillus_leucophaeus
ENSDARG00000021257eif3d100100.000ENSMAMG00000020219eif3d9696.617Mastacembelus_armatus
ENSDARG00000021257eif3d100100.000ENSMZEG00005023294eif3d9796.053Maylandia_zebra
ENSDARG00000021257eif3d9691.165ENSMZEG00005024006eif3d9691.182Maylandia_zebra
ENSDARG00000021257eif3d10092.683ENSMGAG00000012653EIF3D10092.568Meleagris_gallopavo
ENSDARG00000021257eif3d10090.244ENSMAUG00000013161Eif3d9791.887Mesocricetus_auratus
ENSDARG00000021257eif3d10090.244ENSMICG00000012161EIF3D9791.887Microcebus_murinus
ENSDARG00000021257eif3d10090.244ENSMOCG00000011605Eif3d9792.075Microtus_ochrogaster
ENSDARG00000021257eif3d10097.561ENSMMOG00000021496eif3d9696.981Mola_mola
ENSDARG00000021257eif3d10090.244ENSMODG00000000821EIF3D9792.075Monodelphis_domestica
ENSDARG00000021257eif3d10097.561ENSMALG00000019436eif3d9696.241Monopterus_albus
ENSDARG00000021257eif3d10090.244MGP_CAROLIEiJ_G0019973Eif3d9791.887Mus_caroli
ENSDARG00000021257eif3d10090.244ENSMUSG00000016554Eif3d10092.353Mus_musculus
ENSDARG00000021257eif3d10090.244MGP_PahariEiJ_G0019975Eif3d9791.887Mus_pahari
ENSDARG00000021257eif3d10090.244MGP_SPRETEiJ_G0020871Eif3d9791.887Mus_spretus
ENSDARG00000021257eif3d8158.824ENSMPUG00000012581EIF3D10058.824Mustela_putorius_furo
ENSDARG00000021257eif3d10090.244ENSMLUG00000015857EIF3D9791.509Myotis_lucifugus
ENSDARG00000021257eif3d10087.805ENSNGAG00000012038Eif3d9791.698Nannospalax_galili
ENSDARG00000021257eif3d100100.000ENSNBRG00000011311-9598.276Neolamprologus_brichardi
ENSDARG00000021257eif3d10090.244ENSNLEG00000014560EIF3D9791.698Nomascus_leucogenys
ENSDARG00000021257eif3d10090.244ENSMEUG00000004561EIF3D9792.075Notamacropus_eugenii
ENSDARG00000021257eif3d8686.469ENSOPRG00000006924EIF3D9686.469Ochotona_princeps
ENSDARG00000021257eif3d10087.805ENSODEG00000011039EIF3D9791.698Octodon_degus
ENSDARG00000021257eif3d100100.000ENSONIG00000009713eif3d9696.226Oreochromis_niloticus
ENSDARG00000021257eif3d10090.244ENSOANG00000007483EIF3D9980.734Ornithorhynchus_anatinus
ENSDARG00000021257eif3d10090.244ENSOCUG00000006363EIF3D9791.698Oryctolagus_cuniculus
ENSDARG00000021257eif3d9892.963ENSORLG00000001449eif3d9693.396Oryzias_latipes
ENSDARG00000021257eif3d10097.561ENSORLG00020000383eif3d9595.113Oryzias_latipes_hni
ENSDARG00000021257eif3d10090.244ENSORLG00020013943eif3d9991.497Oryzias_latipes_hni
ENSDARG00000021257eif3d10097.561ENSORLG00015006930eif3d9096.167Oryzias_latipes_hsok
ENSDARG00000021257eif3d10090.244ENSORLG00015006954eif3d9989.701Oryzias_latipes_hsok
ENSDARG00000021257eif3d10097.561ENSOMEG00000017372eif3d9591.289Oryzias_melastigma
ENSDARG00000021257eif3d10087.805ENSOMEG00000017337eif3d9591.638Oryzias_melastigma
ENSDARG00000021257eif3d10090.244ENSOGAG00000002978EIF3D9791.509Otolemur_garnettii
ENSDARG00000021257eif3d10090.244ENSOARG00000018926EIF3D9791.887Ovis_aries
ENSDARG00000021257eif3d10090.244ENSPPAG00000031183EIF3D9791.698Pan_paniscus
ENSDARG00000021257eif3d10090.244ENSPPRG00000007244EIF3D9792.075Panthera_pardus
ENSDARG00000021257eif3d10090.244ENSPTIG00000012272EIF3D9690.943Panthera_tigris_altaica
ENSDARG00000021257eif3d10090.244ENSPTRG00000014313EIF3D9791.698Pan_troglodytes
ENSDARG00000021257eif3d10090.244ENSPANG00000023980EIF3D9791.698Papio_anubis
ENSDARG00000021257eif3d10097.561ENSPKIG00000013892eif3d9696.981Paramormyrops_kingsleyae
ENSDARG00000021257eif3d10092.683ENSPSIG00000010983EIF3D9792.830Pelodiscus_sinensis
ENSDARG00000021257eif3d100100.000ENSPMGG00000004524eif3d9891.068Periophthalmus_magnuspinnatus
ENSDARG00000021257eif3d10090.244ENSPEMG00000014069Eif3d9791.887Peromyscus_maniculatus_bairdii
ENSDARG00000021257eif3d10080.488ENSPMAG00000008165eif3d9782.759Petromyzon_marinus
ENSDARG00000021257eif3d10090.244ENSPCIG00000021563EIF3D9792.075Phascolarctos_cinereus
ENSDARG00000021257eif3d100100.000ENSPFOG00000007516eif3d9696.805Poecilia_formosa
ENSDARG00000021257eif3d100100.000ENSPLAG00000015253eif3d9696.805Poecilia_latipinna
ENSDARG00000021257eif3d100100.000ENSPMEG00000019987eif3d9696.617Poecilia_mexicana
ENSDARG00000021257eif3d100100.000ENSPREG00000012742-97100.000Poecilia_reticulata
ENSDARG00000021257eif3d10090.244ENSPPYG00000011774EIF3D9783.962Pongo_abelii
ENSDARG00000021257eif3d10090.244ENSPCAG00000007788EIF3D8395.276Procavia_capensis
ENSDARG00000021257eif3d10090.244ENSPCOG00000014552EIF3D9687.547Propithecus_coquereli
ENSDARG00000021257eif3d10090.244ENSPVAG00000002014EIF3D9791.698Pteropus_vampyrus
ENSDARG00000021257eif3d100100.000ENSPNYG00000011917eif3d9795.865Pundamilia_nyererei
ENSDARG00000021257eif3d10097.561ENSPNAG00000000176eif3d10095.290Pygocentrus_nattereri
ENSDARG00000021257eif3d10090.244ENSRNOG00000005804Eif3d9791.887Rattus_norvegicus
ENSDARG00000021257eif3d10090.244ENSRBIG00000041563EIF3D9791.698Rhinopithecus_bieti
ENSDARG00000021257eif3d10090.244ENSRROG00000039588EIF3D9791.698Rhinopithecus_roxellana
ENSDARG00000021257eif3d10090.244ENSSBOG00000032811EIF3D9791.698Saimiri_boliviensis_boliviensis
ENSDARG00000021257eif3d10090.244ENSSHAG00000011209EIF3D9792.264Sarcophilus_harrisii
ENSDARG00000021257eif3d10097.561ENSSFOG00015023800eif3d9696.241Scleropages_formosus
ENSDARG00000021257eif3d10097.561ENSSMAG00000013962eif3d9696.415Scophthalmus_maximus
ENSDARG00000021257eif3d10097.561ENSSDUG00000023224eif3d9696.053Seriola_dumerili
ENSDARG00000021257eif3d10097.561ENSSLDG00000006833eif3d9696.053Seriola_lalandi_dorsalis
ENSDARG00000021257eif3d8680.761ENSSARG00000012488EIF3D9780.761Sorex_araneus
ENSDARG00000021257eif3d10092.683ENSSPUG00000011683EIF3D9792.264Sphenodon_punctatus
ENSDARG00000021257eif3d100100.000ENSSPAG00000003591eif3d9696.241Stegastes_partitus
ENSDARG00000021257eif3d10090.244ENSSSCG00000000141EIF3D9791.887Sus_scrofa
ENSDARG00000021257eif3d10092.683ENSTGUG00000010728EIF3D9792.264Taeniopygia_guttata
ENSDARG00000021257eif3d10097.561ENSTRUG00000007886eif3d9695.677Takifugu_rubripes
ENSDARG00000021257eif3d10095.122ENSTNIG00000011263eif3d9695.446Tetraodon_nigroviridis
ENSDARG00000021257eif3d8991.616ENSTBEG00000006268EIF3D9691.616Tupaia_belangeri
ENSDARG00000021257eif3d10090.244ENSTTRG00000006637EIF3D9790.943Tursiops_truncatus
ENSDARG00000021257eif3d10090.244ENSUAMG00000017485EIF3D9792.075Ursus_americanus
ENSDARG00000021257eif3d10090.244ENSUMAG00000015827EIF3D9792.075Ursus_maritimus
ENSDARG00000021257eif3d5384.775ENSVPAG00000000359-10084.775Vicugna_pacos
ENSDARG00000021257eif3d10090.244ENSVVUG00000023578EIF3D9792.075Vulpes_vulpes
ENSDARG00000021257eif3d10087.805ENSXETG00000027259eif3d9691.165Xenopus_tropicalis
ENSDARG00000021257eif3d100100.000ENSXCOG00000011633eif3d9786.981Xiphophorus_couchianus
ENSDARG00000021257eif3d100100.000ENSXMAG00000000954eif3d9696.429Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001732formation of cytoplasmic translation initiation complex-IEAProcess
GO:0002191cap-dependent translational initiation-ISSProcess
GO:0003723RNA binding-IEAFunction
GO:0003743translation initiation factor activity21873635.IBAFunction
GO:0003743translation initiation factor activity-IEAFunction
GO:0003743translation initiation factor activity-ISSFunction
GO:0005737cytoplasm-IEAComponent
GO:0005852eukaryotic translation initiation factor 3 complex21873635.IBAComponent
GO:0005852eukaryotic translation initiation factor 3 complex-IEAComponent
GO:0005852eukaryotic translation initiation factor 3 complex-ISSComponent
GO:0006412translation-IEAProcess
GO:0006413translational initiation21873635.IBAProcess
GO:0006413translational initiation-IEAProcess
GO:0016282eukaryotic 43S preinitiation complex-IEAComponent
GO:0033290eukaryotic 48S preinitiation complex-IEAComponent
GO:0098808mRNA cap binding-ISSFunction

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