EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000021405 (Gene tree)
Gene ID: 568230
Gene Symbol: chd3
Alias: -
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 85542 bases
Position: chr7:20673287-20758828
Accession: ZDB-GENE-121031-4
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000148227	ResIII	PF04851.15	1.1e-07	1	1
ENSDARP00000147575	ResIII	PF04851.15	1.2e-07	1	1
ENSDARP00000127601	ResIII	PF04851.15	1.3e-07	1	1
ENSDARP00000150089	ResIII	PF04851.15	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000156717	-	5463	XM_005172235	ENSDARP00000127601	1820 (aa)	XP_005172292	X1WBL0
ENSDART00000182629	-	5463	-	ENSDARP00000147575	1820 (aa)	-	A0A2R8Q3B4
ENSDART00000185259	-	5106	-	ENSDARP00000148227	1701 (aa)	-	A0A2R8Q555
ENSDART00000179801	-	5451	-	ENSDARP00000150089	1816 (aa)	-	A0A2R8QAE3
ENSDART00000188267	-	993	-	ENSDARP00000155121	330 (aa)	-	A0A2R8Q004

Gene Model

Click here to download ENSDARG00000021405's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000021405's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000021405	chd3	94	69.800	ENSDARG00000063535	chd4a	85	76.889
ENSDARG00000021405	chd3	96	71.918	ENSDARG00000105083	chd5	97	76.066
ENSDARG00000021405	chd3	94	80.000	ENSDARG00000025789	chd4b	87	80.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000021405	chd3	99	76.587	ENSG00000170004	CHD3	99	72.658	Homo_sapiens
ENSDARG00000021405	chd3	92	82.136	ENSAPOG00000005614	chd3	99	82.162	Acanthochromis_polyacanthus
ENSDARG00000021405	chd3	76	77.762	ENSAMEG00000003025	-	100	77.615	Ailuropoda_melanoleuca
ENSDARG00000021405	chd3	92	80.970	ENSACIG00000019671	chd3	99	87.692	Amphilophus_citrinellus
ENSDARG00000021405	chd3	97	90.127	ENSAOCG00000023784	chd3	99	86.121	Amphiprion_ocellaris
ENSDARG00000021405	chd3	97	90.446	ENSAPEG00000006341	chd3	93	85.010	Amphiprion_percula
ENSDARG00000021405	chd3	99	90.764	ENSATEG00000000848	chd3	99	82.508	Anabas_testudineus
ENSDARG00000021405	chd3	99	79.830	ENSACAG00000004276	CHD3	91	79.437	Anolis_carolinensis
ENSDARG00000021405	chd3	99	73.927	ENSANAG00000034323	CHD3	94	80.399	Aotus_nancymaae
ENSDARG00000021405	chd3	99	85.512	ENSACLG00000009222	chd3	100	85.325	Astatotilapia_calliptera
ENSDARG00000021405	chd3	99	75.826	ENSBTAG00000014377	CHD3	86	87.259	Bos_taurus
ENSDARG00000021405	chd3	99	76.461	ENSCJAG00000014766	CHD3	93	77.416	Callithrix_jacchus
ENSDARG00000021405	chd3	99	75.996	ENSCAFG00000016859	CHD3	87	82.274	Canis_familiaris
ENSDARG00000021405	chd3	97	78.235	ENSCAFG00020007422	CHD3	99	77.477	Canis_lupus_dingo
ENSDARG00000021405	chd3	99	75.602	ENSCHIG00000016737	CHD3	88	82.609	Capra_hircus
ENSDARG00000021405	chd3	94	84.502	ENSTSYG00000035658	CHD3	93	82.215	Carlito_syrichta
ENSDARG00000021405	chd3	99	72.827	ENSCAPG00000014864	CHD3	90	82.215	Cavia_aperea
ENSDARG00000021405	chd3	99	75.288	ENSCPOG00000022653	CHD3	90	82.215	Cavia_porcellus
ENSDARG00000021405	chd3	99	76.567	ENSCCAG00000034792	CHD3	89	80.468	Cebus_capucinus
ENSDARG00000021405	chd3	99	76.480	ENSCATG00000041717	CHD3	93	77.362	Cercocebus_atys
ENSDARG00000021405	chd3	99	76.439	ENSCLAG00000010523	CHD3	87	85.283	Chinchilla_lanigera
ENSDARG00000021405	chd3	99	75.669	ENSCSAG00000011122	CHD3	90	80.772	Chlorocebus_sabaeus
ENSDARG00000021405	chd3	92	78.301	ENSCPBG00000011966	CHD3	88	93.197	Chrysemys_picta_bellii
ENSDARG00000021405	chd3	99	76.480	ENSCANG00000037641	CHD3	98	73.542	Colobus_angolensis_palliatus
ENSDARG00000021405	chd3	99	76.279	ENSCGRG00001011306	Chd3	95	76.681	Cricetulus_griseus_chok1gshd
ENSDARG00000021405	chd3	98	71.875	ENSCGRG00000007878	Chd3	93	73.171	Cricetulus_griseus_crigri
ENSDARG00000021405	chd3	99	83.243	ENSCSEG00000004489	chd3	98	85.608	Cynoglossus_semilaevis
ENSDARG00000021405	chd3	96	82.372	ENSCVAG00000007293	chd3	95	87.045	Cyprinodon_variegatus
ENSDARG00000021405	chd3	91	74.265	ENSDNOG00000047846	CHD3	80	86.795	Dasypus_novemcinctus
ENSDARG00000021405	chd3	99	76.775	ENSDORG00000010713	Chd3	95	77.633	Dipodomys_ordii
ENSDARG00000021405	chd3	94	85.714	ENSETEG00000017733	CHD3	88	85.714	Echinops_telfairi
ENSDARG00000021405	chd3	79	74.977	ENSEBUG00000008310	chd3	99	67.397	Eptatretus_burgeri
ENSDARG00000021405	chd3	99	74.010	ENSEASG00005019360	CHD3	93	82.215	Equus_asinus_asinus
ENSDARG00000021405	chd3	99	74.346	ENSECAG00000010051	CHD3	93	82.550	Equus_caballus
ENSDARG00000021405	chd3	90	92.784	ENSEEUG00000015205	CHD3	81	92.784	Erinaceus_europaeus
ENSDARG00000021405	chd3	86	94.558	ENSELUG00000019499	chd3	99	94.558	Esox_lucius
ENSDARG00000021405	chd3	99	75.826	ENSFCAG00000009629	CHD3	85	81.605	Felis_catus
ENSDARG00000021405	chd3	97	76.530	ENSFDAG00000008220	CHD3	88	81.940	Fukomys_damarensis
ENSDARG00000021405	chd3	93	83.553	ENSGMOG00000013599	chd3	91	84.061	Gadus_morhua
ENSDARG00000021405	chd3	62	84.427	ENSGAFG00000004055	chd3	99	84.602	Gambusia_affinis
ENSDARG00000021405	chd3	99	87.342	ENSGACG00000019275	chd3	93	87.342	Gasterosteus_aculeatus
ENSDARG00000021405	chd3	81	76.860	ENSGAGG00000013164	CHD3	97	79.674	Gopherus_agassizii
ENSDARG00000021405	chd3	99	76.587	ENSGGOG00000013496	CHD3	98	74.162	Gorilla_gorilla
ENSDARG00000021405	chd3	99	76.386	ENSHGLG00000012017	CHD3	88	82.274	Heterocephalus_glaber_female
ENSDARG00000021405	chd3	88	69.559	ENSHGLG00100013902	CHD3	87	86.567	Heterocephalus_glaber_male
ENSDARG00000021405	chd3	96	83.588	ENSHCOG00000010170	chd3	88	87.654	Hippocampus_comes
ENSDARG00000021405	chd3	98	84.223	ENSIPUG00000003271	chd3	96	85.564	Ictalurus_punctatus
ENSDARG00000021405	chd3	99	76.449	ENSSTOG00000025907	CHD3	95	77.446	Ictidomys_tridecemlineatus
ENSDARG00000021405	chd3	99	76.546	ENSJJAG00000017633	Chd3	95	77.103	Jaculus_jaculus
ENSDARG00000021405	chd3	99	85.887	ENSKMAG00000019292	chd3	100	85.393	Kryptolebias_marmoratus
ENSDARG00000021405	chd3	96	78.962	ENSLBEG00000028485	chd3	93	78.283	Labrus_bergylta
ENSDARG00000021405	chd3	98	73.424	ENSLACG00000008031	CHD3	94	74.277	Latimeria_chalumnae
ENSDARG00000021405	chd3	99	85.497	ENSLOCG00000013965	chd3	93	84.784	Lepisosteus_oculatus
ENSDARG00000021405	chd3	90	94.286	ENSLAFG00000000572	CHD3	85	94.286	Loxodonta_africana
ENSDARG00000021405	chd3	99	76.427	ENSMFAG00000020113	CHD3	98	74.429	Macaca_fascicularis
ENSDARG00000021405	chd3	95	81.404	ENSMMUG00000022221	CHD3	94	74.799	Macaca_mulatta
ENSDARG00000021405	chd3	99	76.427	ENSMNEG00000001728	CHD3	93	82.215	Macaca_nemestrina
ENSDARG00000021405	chd3	99	76.480	ENSMLEG00000032249	CHD3	93	77.362	Mandrillus_leucophaeus
ENSDARG00000021405	chd3	92	81.418	ENSMAMG00000000564	chd3	99	84.939	Mastacembelus_armatus
ENSDARG00000021405	chd3	99	76.493	ENSMAUG00000013873	Chd3	94	79.599	Mesocricetus_auratus
ENSDARG00000021405	chd3	99	75.550	ENSMICG00000008741	CHD3	87	82.215	Microcebus_murinus
ENSDARG00000021405	chd3	99	76.333	ENSMOCG00000004848	Chd3	95	76.627	Microtus_ochrogaster
ENSDARG00000021405	chd3	98	81.690	ENSMMOG00000012699	chd3	99	81.091	Mola_mola
ENSDARG00000021405	chd3	99	75.362	ENSMODG00000007509	CHD3	100	77.635	Monodelphis_domestica
ENSDARG00000021405	chd3	99	76.135	MGP_CAROLIEiJ_G0016564	Chd3	95	77.722	Mus_caroli
ENSDARG00000021405	chd3	99	76.119	ENSMUSG00000018474	Chd3	95	77.661	Mus_musculus
ENSDARG00000021405	chd3	99	76.248	MGP_PahariEiJ_G0017695	Chd3	95	77.913	Mus_pahari
ENSDARG00000021405	chd3	99	76.173	MGP_SPRETEiJ_G0017400	Chd3	95	77.661	Mus_spretus
ENSDARG00000021405	chd3	95	76.177	ENSMPUG00000008861	CHD3	100	75.930	Mustela_putorius_furo
ENSDARG00000021405	chd3	99	75.288	ENSMLUG00000014643	-	89	80.674	Myotis_lucifugus
ENSDARG00000021405	chd3	99	75.365	ENSNGAG00000000773	Chd3	93	75.426	Nannospalax_galili
ENSDARG00000021405	chd3	93	81.874	ENSNBRG00000000636	chd3	98	82.609	Neolamprologus_brichardi
ENSDARG00000021405	chd3	93	85.306	ENSNLEG00000009770	CHD3	95	75.342	Nomascus_leucogenys
ENSDARG00000021405	chd3	86	83.704	ENSMEUG00000005852	CHD3	79	84.151	Notamacropus_eugenii
ENSDARG00000021405	chd3	99	73.529	ENSOPRG00000011069	CHD3	99	75.946	Ochotona_princeps
ENSDARG00000021405	chd3	99	75.445	ENSODEG00000017785	CHD3	86	85.660	Octodon_degus
ENSDARG00000021405	chd3	97	88.542	ENSONIG00000009292	chd3	95	88.542	Oreochromis_niloticus
ENSDARG00000021405	chd3	99	71.622	ENSOCUG00000029299	CHD3	91	78.922	Oryctolagus_cuniculus
ENSDARG00000021405	chd3	84	79.607	ENSORLG00000007107	chd3	93	79.185	Oryzias_latipes
ENSDARG00000021405	chd3	50	94.286	ENSORLG00020008387	chd3	95	83.424	Oryzias_latipes_hni
ENSDARG00000021405	chd3	93	80.012	ENSOMEG00000013691	chd3	99	84.386	Oryzias_melastigma
ENSDARG00000021405	chd3	99	75.458	ENSOGAG00000003216	CHD3	89	82.215	Otolemur_garnettii
ENSDARG00000021405	chd3	99	75.166	ENSOARG00000017855	CHD3	92	76.400	Ovis_aries
ENSDARG00000021405	chd3	99	74.790	ENSPPAG00000032886	CHD3	98	73.479	Pan_paniscus
ENSDARG00000021405	chd3	99	77.042	ENSPPRG00000000626	CHD3	93	77.717	Panthera_pardus
ENSDARG00000021405	chd3	99	76.587	ENSPTRG00000008714	CHD3	98	73.942	Pan_troglodytes
ENSDARG00000021405	chd3	99	75.510	ENSPANG00000023938	CHD3	98	74.485	Papio_anubis
ENSDARG00000021405	chd3	99	87.095	ENSPKIG00000006305	chd3	99	87.011	Paramormyrops_kingsleyae
ENSDARG00000021405	chd3	58	81.826	ENSPSIG00000010177	CHD3	97	82.061	Pelodiscus_sinensis
ENSDARG00000021405	chd3	99	75.209	ENSPEMG00000014262	Chd3	94	75.666	Peromyscus_maniculatus_bairdii
ENSDARG00000021405	chd3	88	89.950	ENSPCIG00000005442	CHD3	89	89.950	Phascolarctos_cinereus
ENSDARG00000021405	chd3	97	88.502	ENSPFOG00000012464	chd3	90	84.190	Poecilia_formosa
ENSDARG00000021405	chd3	95	80.100	ENSPLAG00000002887	chd3	96	79.486	Poecilia_latipinna
ENSDARG00000021405	chd3	56	87.339	ENSPMEG00000016725	chd3	91	82.075	Poecilia_mexicana
ENSDARG00000021405	chd3	98	84.972	ENSPREG00000011044	chd3	97	84.586	Poecilia_reticulata
ENSDARG00000021405	chd3	95	79.125	ENSPPYG00000007940	CHD3	89	82.215	Pongo_abelii
ENSDARG00000021405	chd3	96	78.556	ENSPCAG00000004350	CHD3	85	85.547	Procavia_capensis
ENSDARG00000021405	chd3	99	76.527	ENSPCOG00000020952	CHD3	88	82.215	Propithecus_coquereli
ENSDARG00000021405	chd3	82	75.704	ENSPVAG00000016344	CHD3	76	84.681	Pteropus_vampyrus
ENSDARG00000021405	chd3	98	91.393	ENSPNAG00000020393	chd3	99	92.727	Pygocentrus_nattereri
ENSDARG00000021405	chd3	99	74.376	ENSRNOG00000009722	Chd3	100	75.448	Rattus_norvegicus
ENSDARG00000021405	chd3	95	79.461	ENSRBIG00000033562	CHD3	94	78.064	Rhinopithecus_bieti
ENSDARG00000021405	chd3	99	77.530	ENSRROG00000029554	CHD3	92	81.119	Rhinopithecus_roxellana
ENSDARG00000021405	chd3	99	76.514	ENSSBOG00000020719	CHD3	98	76.782	Saimiri_boliviensis_boliviensis
ENSDARG00000021405	chd3	99	76.361	ENSSHAG00000014412	CHD3	98	76.070	Sarcophilus_harrisii
ENSDARG00000021405	chd3	87	94.615	ENSSFOG00015023123	chd3	95	86.854	Scleropages_formosus
ENSDARG00000021405	chd3	91	91.111	ENSSMAG00000006451	chd3	96	90.127	Scophthalmus_maximus
ENSDARG00000021405	chd3	58	82.788	ENSSDUG00000005792	chd3	96	82.788	Seriola_dumerili
ENSDARG00000021405	chd3	95	90.357	ENSSPAG00000013694	chd3	99	84.897	Stegastes_partitus
ENSDARG00000021405	chd3	99	75.640	ENSSSCG00000021363	CHD3	99	77.562	Sus_scrofa
ENSDARG00000021405	chd3	81	83.169	ENSTRUG00000014990	chd3	91	83.024	Takifugu_rubripes
ENSDARG00000021405	chd3	99	81.058	ENSTNIG00000012998	chd3	98	80.537	Tetraodon_nigroviridis
ENSDARG00000021405	chd3	63	92.784	ENSTBEG00000011454	-	67	92.784	Tupaia_belangeri
ENSDARG00000021405	chd3	98	78.332	ENSTTRG00000010295	CHD3	86	83.707	Tursiops_truncatus
ENSDARG00000021405	chd3	100	73.630	ENSUAMG00000005475	CHD3	93	82.274	Ursus_americanus
ENSDARG00000021405	chd3	57	89.172	ENSVPAG00000010794	-	61	90.196	Vicugna_pacos
ENSDARG00000021405	chd3	97	76.874	ENSVVUG00000028011	CHD3	92	82.274	Vulpes_vulpes
ENSDARG00000021405	chd3	99	69.269	ENSXETG00000012991	chd3	85	77.365	Xenopus_tropicalis
ENSDARG00000021405	chd3	57	87.769	ENSXCOG00000000809	chd3	93	87.656	Xiphophorus_couchianus
ENSDARG00000021405	chd3	87	89.130	ENSXMAG00000016035	chd3	99	89.130	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0007051	spindle organization	-	IEA	Process
GO:0007098	centrosome cycle	-	IEA	Process
GO:0007417	central nervous system development	25533962.	IMP	Process
GO:0016581	NuRD complex	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0048589	developmental growth	25533962.	IMP	Process