EuRBPDB

Description

Ensembl ID: ENSDARG00000021811 (Gene tree)
Gene ID: 406660
Gene Symbol: calm3a
Alias: CALMx2|CaM3 Gamma|CaMbeta|CaMgamma|calm2g|sb:cb617|wu:fb08d09|wu:fb69c08|wu:fi05b08|wu:fj34a08|zgc:63926|zgc:86728
Full Name: calmodulin 3a (phosphorylase kinase%2C delta)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 7897
Position: chr17: 26713111-26721007
Accession: ZDB-GENE-030131-5590
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000034580	-	1576	-	ENSDARP00000035027	149 (aa)	-	Q6PI52
ENSDART00000134810	-	520	-	-	- (aa)	-	-
ENSDART00000186813	-	450	-	ENSDARP00000156858	149 (aa)	-	Q6PI52

Gene Model

Pathways

Pathway ID	Pathway Name	Source
dre04020	Calcium signaling pathway	KEGG
dre04070	Phosphatidylinositol signaling system	KEGG
dre04114	Oocyte meiosis	KEGG
dre04218	Cellular senescence	KEGG
dre04261	Adrenergic signaling in cardiomyocytes	KEGG
dre04270	Vascular smooth muscle contraction	KEGG
dre04371	Apelin signaling pathway	KEGG
dre04625	C-type lectin receptor signaling pathway	KEGG
dre04744	Phototransduction	KEGG
dre04910	Insulin signaling pathway	KEGG
dre04912	GnRH signaling pathway	KEGG
dre04916	Melanogenesis	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000021811	calm3a	100	100.000	ENSG00000160014	CALM3	100	100.000	Homo_sapiens
ENSDARG00000021811	calm3a	100	100.000	ENSMUSG00000001175	Calm1	100	100.000	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0021555	midbrain-hindbrain boundary morphogenesis	28148652.	IMP	Process